LOC120562049


Basic Information

Item Value
gene id LOC120562049
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 18638209 ~ 18641329 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805488.1
TGTCACTGCctctacacaaacaaacaaaattggaCTCACTTTGTAGTTTTGCCTGCAGTGCTTTGTGTTTCCCCTACAGTTTATCTGTCTTATTGAACTGAATTCCAGGCTAGCAGATACAGTTGTGATCCGCAAGATAGCAGTAAAATCAGCTCAAAGAAGTAAGGACAAAGACAGCAAGAAGATGATATTCTCTTTGTTCCTGGCAGCTATTATCAGCCCTGTGATTACTGAAGAATGGAGGGCCAGTGTTGTAGAAGAACTTGACGCCCTGGTTACATCCTGTGTTGTGGTACCCTGTTCATTCACCCATCCTAAAGAGAAGCTGCCCACCGCCAGACTCAGAGGGATCTGGCATCGTTCAACTGATAAAAACCAACGCATCTATTTTGAGGATAGCACGCAGGTCTTGGAAAACTTTAGGGGCCGCACaaagttgttggggcagctgggTCAGAACAACTGCACTTTAGAAATTACTAACATTAAAGATCATGACAACGGCCCTTTCTGTTTCCGGATCGAACTAGCACGAACAGAGACTGATACATCCACCGTTGACAAGTTCTCCTTTGTGGAGAGTTGCGTCACGCTCAGAATGTTCCCTGATCCTCTGAATCCTACACTGAGTCACCCAAAGACGGCCATTCAAGATCGTCCCTACACTATCACCTGTTCAGTCCGCCATACCTGCCCCTCCCATGTGCCTAAACTCACATGGAGTAGAGGCACAGCAGATGAGGTAACAGAGGTCCACAAGGAAATTAGTTTGGGCTACTGGGAGGCCCAGTCCATCCTGGCCATCATTCCTGAGGAGAAGGATGATCACAGTGATGTCACCTGTACAGCAGAATTTAATGGACAGAAGACATCATCTGCAACATTGAGACTCTATGTAAAACGTACAGAAAACTATAACCACATCATCATTCCCACGGTGGCAGTGATTGGTACAGCTGTGATCTTTGCAGTCTTCTGCATTTTCATGGTGAAAAGATACAAGAAACGCATAGCAGAACTCCAAAATCAAGAAGGCAGTGTGTGGAACCGCCTCTCCAGAATGTCTCGCAGGAGAATCTAAAGGTGAGAATTGAAAAAAGGAACTTCACTTAAATATGTGAAACCACACAGTTTGCTTTATTTGTTGTGATGTCCGCACAGTTGAACcaatatgtaaaaaatatatatataaaaatatataaaactgcAACAATACATTTATAGCCACAAGGGGGTAGAAGAAATTCAAAAACAAGTTTCTGCACACAGtttcagcagacacagagcaacattactGTCCCATGTTTTTTGCACACAATTCAGAACTGGTATTTCATATGATATGTATCTGGTATTAAAATTATTGTGATTGAATCTTAAACAATTTGTCAACAAACATGGCATGTCTTTGGTTGAAGCAAACAAGTTCTGTTCTTCTGTTACCGAGGGAGGGCTTGTCtcactgtaaacccagatttagttgtaattaaacttttttaGTGCTCAGtacttattctttcatgttttgttaaaaaacatattcattaGTAAATCACATttgttgtttgtaataatcagcttaagtatgctatgcacagatcatattaagcagagataactaagGATGTTAAGTTTCTGTATGTGAGGGACGGGGTCATTTGAACTGTTCTGTGCTGAAGCgatgcaaaggctcatgggaaaaaaaattctgaacGGTTTTTGTCCtagttaaaatgtgttttaataatgttctgttaatgttgggtgtgcatttatgttaccTGGGTTTTTGATTTGtatggttgatttagtgttcatgtttatctacatttattgttgTACCATGACCGGGG

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04060 Cytokine-cytokine receptor interaction
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805488.1 True 1853 mRNA 0.41 8 18638209 18641329

Neighbor

gene id symbol gene type direction distance location
LOC120562811 NA coding upstream 90012 18545673 ~ 18548197 (+)
LOC120562809 NA coding upstream 159187 18474502 ~ 18479022 (+)
smg9 smg9 coding upstream 201960 18425189 ~ 18436249 (+)
si:dkey-79d12.5 NA coding upstream 240492 18395407 ~ 18397717 (+)
LOC120562815 NA coding upstream 249750 18387345 ~ 18388459 (+)
LOC120561938 NA coding downstream 58973 18700302 ~ 18712968 (+)
LOC120562799 NA coding downstream 83723 18725052 ~ 18743800 (+)
LOC120562045 NA coding downstream 90073 18731402 ~ 18736585 (+)
LOC120562035 NA coding downstream 107756 18749085 ~ 18773822 (+)
si:dkey-238d18.4 LOC104961375,LOC103359602 coding downstream 149296 18790625 ~ 18799451 (+)
G73338 NA non-coding upstream 73127 18501151 ~ 18565082 (+)
LOC120562823 NA non-coding upstream 142865 18490124 ~ 18495344 (+)
G73330 NA non-coding upstream 189780 18440987 ~ 18448429 (+)
G73326 NA non-coding upstream 213806 18423989 ~ 18424403 (+)
G73311 NA non-coding upstream 243014 18391339 ~ 18395195 (+)
G73361 NA non-coding downstream 45713 18687042 ~ 18692970 (+)
G73377 NA non-coding downstream 109016 18750345 ~ 18750799 (+)
G73484 NA non-coding downstream 171980 18813309 ~ 18815597 (+)
G73493 NA non-coding downstream 231045 18872374 ~ 18873957 (+)
G73499 aplp1 non-coding downstream 267174 18908503 ~ 18911216 (+)
LOC120562796 NA other upstream 902 18632402 ~ 18637307 (+)
LOC120562806 NA other upstream 168131 18466428 ~ 18470078 (+)
LOC120562807 NA other upstream 176883 18455574 ~ 18461326 (+)
kcnn4 kcnn4,LOC104953880,LOC100704922 other upstream 217488 18399056 ~ 18420721 (+)
paqr7b LOC107588505,LOC104938075,LOC103388542 other upstream 859079 17750930 ~ 17779130 (+)
LOC120562819 NA other downstream 11057 18652386 ~ 18655731 (+)
LOC120562824 NA other downstream 103333 18744662 ~ 18746675 (+)
proser3 NA other downstream 177872 18819201 ~ 18828688 (+)
kmt2bb kmt2b other downstream 191916 18833245 ~ 18861958 (+)
G73570 LOC103371659 other downstream 507284 19148613 ~ 19158995 (+)

Expression


Co-expression Network