LOC120562050 (LOC103366409)


Basic Information

Item Value
gene id LOC120562050
gene name LOC103366409
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 17489596 ~ 17491941 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805489.1
CTGGCAGACTGTGGTGTAGGTCACTGGCTGTCGATGCCCTAACCGTCCTCTGTACCTTTAAGGGAACGACATACCTTTTTCATCCACCAGATTCTGCTGATATGAACTACCATCAACCTTTATATCCAGAGTGGAGCACATGAGGAGGGGCTGATGCTGGAGCACACTTTGCCGCCTCTGCAGCATTTGATTAGTTAGTAGAACAAAAGCTGTGTTTAGAATTTGATTCGTTAATTTTACGTGTAATTAAGTTGTTCCTGCTTTTAAttcaattcatattttttttaaatctttatttttaattgaatATAATTTAGAGATGTGTGCTTTTGCAGTCCGTGTGTTTTTGGGAATCATTCTCTGTGCACCGTACCAGTGCTTGGAGTGTCCTTTTGGCTGTGAGTGTTTTGCCGTCACTCGCACAGTAAAATGTGTTTCTAAGGATTTGCTCACGGTGCCTCAAAGTATTCCAGGATATGCAAAGACTGTCATCATCACAGGGAATAATATACACCGGATTGGACCACATTCCTTTACAGAGCTGGAGAATGTCACCAACATCGTTTTAAGCAATAATAGGATTACAGAGATGTCATCTGACAGCTTCTCTGCTCTCATCAACCTGCGCTTTCTGGACCTCAGTGAGAACCAGCTGGCCCTCATCCATCCACAAGCTCTCAGCATACCCGGCAGTCCCCTTCAGGAGCTCAACCTCAGCCGCTCGCTGCACAATTTCACCGCCCTGACAGACCTTACCACGGCTCTGCGCTGGGGTGGCCTCAGTGGGCTCCTCTGCCTCGACCTCTCTGGGAACCAGCTCACCCTGCTGCCCCCAGGGATGTTCTCCCACCTTCCCGACCTGCAGCAGCTCCTCCTCGCCAACAACTCTCTGATGGCTGTCTACAGTGGAACCTTCTCTGGTATGAGCCATCTGGAGATGCTGGACCTTACACACAATGCCTTCATGACATTCAGTGCTGATGCTCTACAAGAGCTGAAGAAGCTCGGGAACATCCGGATCCTTCTTGGAGACAACCCTTACACCTGCTCCTGTGAGATCAGAAACTTTGTGGCCTGGCTGAATGAATCAAGAGCTCAGGTAGATGTGGATGCTGTAAGGTGTGCCTCACCAAGAGGGTTCAGTGACACCTGGCTGAGAGGACTCGGTGACCATGCCCTCGGATGCGTTGTTCCAGTACAAGCAGAGGTGACTGACCTCACCCTGCAGACATCCTATGTCTTCCTAGGGCTGGTGCTGGGGTTTGTGGGCATGGTCTTTCTCTTTGTTCTCTACCTGAATCGCAAAGGTATGAAGAAGTGGATCATTGAAATGAGAGATGCGTGTCAGGACGTTCTGGAGGGATATCACTACAGATATGAGATTGACTCAGACCCTCGGCTGGGGCACATCTCTGCAAATAACGGAGGCAGCATGGCACAAGGGCATTTAGGATTAGCTCTGTCACAGCAGCTGCAAAGTGACACCTGTATTGTGCAGCTTCCTACAGACACACAGGTTAAACAGCTGACAACCTCTTCACCTGTGAAGCTATGATCTTTTAATGAAGCTAGAATAATTTAAAGCAGATGTAGATGTGAGATGCTACTAGATTTACAATTCATGTTTTTGAGCTTCCTGTACATACTGCAGTTATTACTTTTAAATCTTACAAAGTGCTTTCGTGTTTTCGAGGCACTTGTATCTGTATATTTACCTTAa
>XM_039805491.1
CAAAGACTGTCATCATCACAGGGAATAATATACACCGGATTGGACCACATTCCTTTACAGAGCTGGAGAATGTCACCAACATCGTTTTAAGCAATAATAGatgtgAGTTGTCTCCAAGCatgaaaataatacaaaatgtcTCAGGACAAATGTTACAGTGTTAGTCATCTTCACAGGATTACAGAGATGTCATCTGACAGCTTCTCTGCTCTCATCAACCTGCGCTTTCTGGACCTCAGTGAGAACCAGCTGGCCCTCATCCATCCACAAGCTCTCAGCATACCCGGCAGTCCCCTTCAGGAGCTCAACCTCAGCCGCTCGCTGCACAATTTCACCGCCCTGACAGACCTTACCACGGCTCTGCGCTGGGGTGGCCTCAGTGGGCTCCTCTGCCTCGACCTCTCTGGGAACCAGCTCACCCTGCTGCCCCCAGGGATGTTCTCCCACCTTCCCGACCTGCAGCAGCTCCTCCTCGCCAACAACTCTCTGATGGCTGTCTACAGTGGAACCTTCTCTGGTATGAGCCATCTGGAGATGCTGGACCTTACACACAATGCCTTCATGACATTCAGTGCTGATGCTCTACAAGAGCTGAAGAAGCTCGGGAACATCCGGATCCTTCTTGGAGACAACCCTTACACCTGCTCCTGTGAGATCAGAAACTTTGTGGCCTGGCTGAATGAATCAAGAGCTCAGGTAGATGTGGATGCTGTAAGGTGTGCCTCACCAAGAGGGTTCAGTGACACCTGGCTGAGAGGACTCGGTGACCATGCCCTCGGATGCGTTGTTCCAGTACAAGCAGAGGTGACTGACCTCACCCTGCAGACATCCTATGTCTTCCTAGGGCTGGTGCTGGGGTTTGTGGGCATGGTCTTTCTCTTTGTTCTCTACCTGAATCGCAAAGGTATGAAGAAGTGGATCATTGAAATGAGAGATGCGTGTCAGGACGTTCTGGAGGGATATCACTACAGATATGAGATTGACTCAGACCCTCGGCTGGGGCACATCTCTGCAAATAACGGAGGCAGCATGGCACAAGGGCATTTAGGATTAGCTCTGTCACAGCAGCTGCAAAGTGACACCTGTATTGTGCAGCTTCCTACAGACACACAGGTTAAACAGCTGACAACCTCTTCACCTGTGAAGCTATGATCTTTTAATGAAGCTAGAATAATTTAAAGCAGATGTAGATGTGAGATGCTACTAGATTTACAATTCATGTTTTTGAGCTTCCTGTACATACTGCAGTTATTACTTTTAAATCTTACAAAGTGCTTTCGTGTTTTCGAGGCACTTGTATCTGTATATTTACCTTAatgttgtgtgtttattatacattttataaaaacaatacaaaggCTACATTGAAAGCATACTCTCATTTTCTGTCAACTTAGTTTTTTGGTATTAGTATCATGATTTTAAATATCTTAACATACTGCAAAAGaccagaaaaataaatgatatagATGGTAGCTCAATGGCAtgacaaatgtacagtatattgacTTAAGAAACTGTAATCCATAGACACCCAGTAAATTGTATAAGTACTACGATTAATCCTTGAAGTTCAGTTAATCTTTGTTGTGGTAGAATTCATAATGTGACCTGTATTCCAATATTAAAAGGAATAGATATTCAATCTACTGTATGATATGAAATAGTATTTGcattaattataaataaaataaacttttgATGTACTTAA

Function

NR:

description
PREDICTED: trophoblast glycoprotein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805489.1 True 1720 mRNA 0.47 2 17489596 17491547
XM_039805491.1 False 1711 mRNA 0.43 2 17490075 17491941

Neighbor

gene id symbol gene type direction distance location
LOC120562051 tmem222 coding upstream 122 17486166 ~ 17489474 (+)
wdtc1 wdtc1,LOC102795681 coding upstream 4743 17475568 ~ 17484853 (+)
cdcp1a NA coding upstream 44402 17439093 ~ 17445194 (+)
LOC120561781 tmem158,LOC102794155 coding upstream 52792 17435174 ~ 17436804 (+)
mrpl13 mrpl13 coding upstream 326898 17149825 ~ 17162698 (+)
kdf1a kdf1,LOC104937957 coding downstream 503 17492444 ~ 17497733 (+)
gpatch3 gpatch3 coding downstream 17115 17509056 ~ 17512860 (+)
gpn2 gpn2 coding downstream 21086 17513027 ~ 17517296 (+)
arid1aa arid1a coding downstream 28063 17520004 ~ 17535611 (+)
pigv pigv coding downstream 44589 17536530 ~ 17539422 (+)
G73027 NA non-coding upstream 26569 17427828 ~ 17463027 (+)
G73019 NA non-coding upstream 85969 17392268 ~ 17403627 (+)
trnar-acg_16 NA non-coding upstream 120821 17368703 ~ 17368775 (+)
G72862 NA non-coding upstream 423685 17065589 ~ 17065911 (+)
G72879 NA non-coding upstream 497607 16991716 ~ 16991989 (+)
LOC120562054 NA non-coding downstream 8648 17500589 ~ 17504921 (+)
G73186 NA non-coding downstream 432009 17923950 ~ 17926628 (+)
G73216 NA non-coding downstream 622774 18114715 ~ 18116323 (+)
G73230 LOC104960016 non-coding downstream 633053 18124994 ~ 18127318 (+)
G73231 NA non-coding downstream 635482 18127423 ~ 18127887 (+)
ubxn11 NA other upstream 28478 17456643 ~ 17461118 (+)
G73031 LOC103366415 other upstream 37028 17449585 ~ 17452568 (+)
G72750 LOC104952694,LOC106925895 other upstream 1417395 16018359 ~ 16072201 (+)
irx4a LOC103360443,LOC102233360,LOC103478376,LOC108232226,LOC101474805,LOC102784018,LOC102295185,LOC102202030,LOC104961814,LOC103145173 other upstream 1929304 15553464 ~ 15560292 (+)
LOC120561718 LOC107101581 other upstream 2856875 14626478 ~ 14632721 (+)
G73123 phactr4 other downstream 153572 17645513 ~ 17647186 (+)
paqr7b LOC107588505,LOC104938075,LOC103388542 other downstream 258989 17750930 ~ 17779130 (+)
kcnn4 kcnn4,LOC104953880,LOC100704922 other downstream 907115 18399056 ~ 18420721 (+)
LOC120562807 NA other downstream 963633 18455574 ~ 18461326 (+)
LOC120562806 NA other downstream 974487 18466428 ~ 18470078 (+)

Expression


Co-expression Network