kdf1a (kdf1,LOC104937957)


Basic Information

Item Value
gene id kdf1a
gene name kdf1,LOC104937957
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 17492444 ~ 17497733 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805493.1
TAACATGACGTCACGACTCACCTGTGGGTGGGTGTAGGATCTGGGATTAGCTGTAGCCACAGTTAATAGCCAAACATTGGAAACACAAGACTAACACGAGACTAAgttttccccaaaaaaaaggAGACGACGCGAGTGAGCCGAGTTGCGTTGTTCGGTTGAGGCATCCGACTTCAGGTTGGCAAAGTTTGGTGTTTCTTGGAAGTCACCTGGAAATCTGTGGGCGGTCAaaatctgtctttctttctctgtttgaAGCGCTAGCAGAAGTTTTCTCTGTGAGACTTCCGCGGTTTGCTCGCCGAACAAGTTATCTGGGATAAAAGACAACCACAAGCGTTTCCTCTTATGCGGTCCCAGGTATTCTGAGCCATGCCTGGCCACAGCACAGGGGCTCCCCAGGCGTCCTGCCACCACAAACACCACAGCTCCAGAGCAGGAAAGTACAGAGCGGCTCGGACTATATCCAAGGAGAGCACGGCCAGTCAAGACTCCTACAAGGATCCTCGTGGGGAGCATCTACATGAGCACCACGCTGACCACTTACGGTACTCAGAATGCAAGAATGGTCGCAGCAGAGGCCACCCGCGTAATGGCACGGGTCGGGGCTCTGAGACTATAGGATTTATTCCTGGCTCCGCAGACAGTACGCCTACCAGCAGACGTGCCTGTGGCTCCTGCGCCTCCATGGGTTGGAGTGGCTGTAAGGCTCTTATCTGCTGTGTTCTGACCTGTGGATTTTATGGCAGCCGAGAGCCCTGCCTGCCTGTTAATGAGAGCTCCACAGACCATCCTCCTAAAGCAGGCAGTGAGCCACACCCTCCTAATGGCATAGCTGTGACCAGCCCCACTTGTGGCATGCCTTTGGAGTCCAGCAAGTCTACCAAAGCCTCGAAGTTGACGAGTGACAGCTTCCGCTACCCAGATGTGCGCATCGCAGGTCAGACGGTAAGGTATACGGTTGCTGCCCCCAAACGAACCCGTACACCCGGCAAGGGGGAAAGCCAGCGGCCTATCAGCAACACCAGCCTGTTATCCCGTGAGGACTATGACTTAGATGACCTGGGtgacacaggcacagacatTGACTCTCTTATCACCAAGAAGCTGCTGGAGCTTTACGCCCTGCACCAGATTGACCAGCTGGCCAAGTGCACCTCTGACTCCTCTTTCTCCCGCAAGACCAACGAGATCAGCGAGCTCATTTACAGCATTGCTCAGGACTACAACCTGGAGGAGCAGGAGGCAGAGTGCAAGCTGGTGCACGGAGTCATCCGCATCAGCACGCGAAAGGGCAAGAGAAACAAGAGCCATCCGTCTACCGGACAGCGTACTAATGGGAGGAGTGATGGGACTCTCCCTGACAGTGGCAACGAGACCATGACCAACACTTTCATGAGCAGTGACTTTCCAGAGGTGAAAGTGTCGGAGCAAACGCCGTCAGATGAGCTGGCGAGGAAAATGAGACATTACAGCGGGAGAACTTACTCCTCCAGCACCACCACGCCCTACCATGACACCGAAACGGACTCCTCAGGcgctcctcttcttctctgaagggggacacagacacacaagtacCTGAACTGACAAGTGATGTAGCCAACTAGATGGACAATGTTACCCTCCTgctgtcatttttgttgttgttgctgttactGAGTGGAGCACCTTTTACCCTGGGGTAGTGGAACTTCTGCTCTTAAGTGGTCTCGCTAATATTTGCTATTGGAGTGTCCTTTAAATTCAtggaccttttttttattttttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatctctccaGCAAATGACCCACGGAGgaaacaattctttttttttttttacacagggaAAGCCAATgccgttttttttgtgtatttctaTGCCGTGTTTCAAGTtgttttcagaaaataaaacatgactacACTCCATACAATCTTAGCAGTCAGGCCAGAGGATAGAGACTAATGGTAGAACGTAACCGTTCTCATTCTTGTCTGTGATTGTTTATGCAAGCCATTGTGCATGTACCGTATctaatgtatgtatgcatgggCTTATTAACTCCTGCCAGTTAGACTCCTCGAAAGCATGTTTTTACCTGAAAGCTGCATTGTTAAGCCATATTTTGATGTACATATTTTTATGTCAATGTTACTGTGGTTCTTTTTAACCATGTGTGGCATCTGGCCacagttctttttttattcacagATCAGTCTTGTttttaactaaataaaaatCTCCATGCTTGTTTATGCCTTTTCATGTGCATGCAAGAAAATATCTTTATGGTGTTTAAGTAATCTATTTCTCATTTTAACTTACAGAAAATGGGTAATAATGCTTGATGCTGGCAGAGCTTTGTGCCAACCTTTTTGTTCTCTCCAGACAAGCCAATATAATCTATTCATGCA
>XM_039805494.1
TAACATGACGTCACGACTCACCTGTGGGTGGGTGTAGGATCTGGGATTAGCTGTAGCCACAGTTAATAGCCAAACATTGGAAACACAAGACTAACACGAGACTAAgttttccccaaaaaaaaggAGACGACGCGAGTGAGCCGAGTTGCGTTGTTCGGTTGAGGCATCCGACTTCAGCGCTAGCAGAAGTTTTCTCTGTGAGACTTCCGCGGTTTGCTCGCCGAACAAGTTATCTGGGATAAAAGACAACCACAAGCGTTTCCTCTTATGCGGTCCCAGGTATTCTGAGCCATGCCTGGCCACAGCACAGGGGCTCCCCAGGCGTCCTGCCACCACAAACACCACAGCTCCAGAGCAGGAAAGTACAGAGCGGCTCGGACTATATCCAAGGAGAGCACGGCCAGTCAAGACTCCTACAAGGATCCTCGTGGGGAGCATCTACATGAGCACCACGCTGACCACTTACGGTACTCAGAATGCAAGAATGGTCGCAGCAGAGGCCACCCGCGTAATGGCACGGGTCGGGGCTCTGAGACTATAGGATTTATTCCTGGCTCCGCAGACAGTACGCCTACCAGCAGACGTGCCTGTGGCTCCTGCGCCTCCATGGGTTGGAGTGGCTGTAAGGCTCTTATCTGCTGTGTTCTGACCTGTGGATTTTATGGCAGCCGAGAGCCCTGCCTGCCTGTTAATGAGAGCTCCACAGACCATCCTCCTAAAGCAGGCAGTGAGCCACACCCTCCTAATGGCATAGCTGTGACCAGCCCCACTTGTGGCATGCCTTTGGAGTCCAGCAAGTCTACCAAAGCCTCGAAGTTGACGAGTGACAGCTTCCGCTACCCAGATGTGCGCATCGCAGGTCAGACGGTAAGGTATACGGTTGCTGCCCCCAAACGAACCCGTACACCCGGCAAGGGGGAAAGCCAGCGGCCTATCAGCAACACCAGCCTGTTATCCCGTGAGGACTATGACTTAGATGACCTGGGtgacacaggcacagacatTGACTCTCTTATCACCAAGAAGCTGCTGGAGCTTTACGCCCTGCACCAGATTGACCAGCTGGCCAAGTGCACCTCTGACTCCTCTTTCTCCCGCAAGACCAACGAGATCAGCGAGCTCATTTACAGCATTGCTCAGGACTACAACCTGGAGGAGCAGGAGGCAGAGTGCAAGCTGGTGCACGGAGTCATCCGCATCAGCACGCGAAAGGGCAAGAGAAACAAGAGCCATCCGTCTACCGGACAGCGTACTAATGGGAGGAGTGATGGGACTCTCCCTGACAGTGGCAACGAGACCATGACCAACACTTTCATGAGCAGTGACTTTCCAGAGGTGAAAGTGTCGGAGCAAACGCCGTCAGATGAGCTGGCGAGGAAAATGAGACATTACAGCGGGAGAACTTACTCCTCCAGCACCACCACGCCCTACCATGACACCGAAACGGACTCCTCAGGcgctcctcttcttctctgaagggggacacagacacacaagtacCTGAACTGACAAGTGATGTAGCCAACTAGATGGACAATGTTACCCTCCTgctgtcatttttgttgttgttgctgttactGAGTGGAGCACCTTTTACCCTGGGGTAGTGGAACTTCTGCTCTTAAGTGGTCTCGCTAATATTTGCTATTGGAGTGTCCTTTAAATTCAtggaccttttttttattttttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatctctccaGCAAATGACCCACGGAGgaaacaattctttttttttttttacacagggaAAGCCAATgccgttttttttgtgtatttctaTGCCGTGTTTCAAGTtgttttcagaaaataaaacatgactacACTCCATACAATCTTAGCAGTCAGGCCAGAGGATAGAGACTAATGGTAGAACGTAACCGTTCTCATTCTTGTCTGTGATTGTTTATGCAAGCCATTGTGCATGTACCGTATctaatgtatgtatgcatgggCTTATTAACTCCTGCCAGTTAGACTCCTCGAAAGCATGTTTTTACCTGAAAGCTGCATTGTTAAGCCATATTTTGATGTACATATTTTTATGTCAATGTTACTGTGGTTCTTTTTAACCATGTGTGGCATCTGGCCacagttctttttttattcacagATCAGTCTTGTttttaactaaataaaaatCTCCATGCTTGTTTATGCCTTTTCATGTGCATGCAAGAAAATATCTTTATGGTGTTTAAGTAATCTATTTCTCATTTTAACTTACAGAAAATGGGTAATAATGCTTGATGCTGGCAGAGCTTTGTGCCAACCTTTTTGTTCTCTCCAGACAAGCCAATATAATCTATTCATGCA

Function

symbol description
kdf1 Predicted to be involved in several processes, including positive regulation of epidermal cell differentiation; regulation of epidermal cell division; and skin development. Predicted to act upstream of or within keratinocyte development and negative regulation of keratinocyte proliferation. Located in cell junction; mitotic spindle; and nucleoplasm. Implicated in ectodermal dysplasia 12.

NR:

description
PREDICTED: keratinocyte differentiation factor 1

GO: NA

KEGG:

id description
K23346 KDF1; keratinocyte differentiation factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805493.1 True 2499 mRNA 0.46 4 17492444 17497733
XM_039805494.1 False 2418 mRNA 0.46 5 17492444 17497733

Neighbor

gene id symbol gene type direction distance location
LOC120562050 LOC103366409 coding upstream 503 17489596 ~ 17491941 (+)
LOC120562051 tmem222 coding upstream 2970 17486166 ~ 17489474 (+)
wdtc1 wdtc1,LOC102795681 coding upstream 7591 17475568 ~ 17484853 (+)
cdcp1a NA coding upstream 47250 17439093 ~ 17445194 (+)
LOC120561781 tmem158,LOC102794155 coding upstream 55640 17435174 ~ 17436804 (+)
gpatch3 gpatch3 coding downstream 11323 17509056 ~ 17512860 (+)
gpn2 gpn2 coding downstream 15294 17513027 ~ 17517296 (+)
arid1aa arid1a coding downstream 22271 17520004 ~ 17535611 (+)
pigv pigv coding downstream 38797 17536530 ~ 17539422 (+)
zdhhc18a zdhhc18,LOC100695947,LOC102211057 coding downstream 43324 17541057 ~ 17550194 (+)
G73027 NA non-coding upstream 29417 17427828 ~ 17463027 (+)
G73019 NA non-coding upstream 88817 17392268 ~ 17403627 (+)
trnar-acg_16 NA non-coding upstream 123669 17368703 ~ 17368775 (+)
G72862 NA non-coding upstream 426533 17065589 ~ 17065911 (+)
G72879 NA non-coding upstream 500455 16991716 ~ 16991989 (+)
LOC120562054 NA non-coding downstream 2856 17500589 ~ 17504921 (+)
G73186 NA non-coding downstream 426217 17923950 ~ 17926628 (+)
G73216 NA non-coding downstream 616982 18114715 ~ 18116323 (+)
G73230 LOC104960016 non-coding downstream 627261 18124994 ~ 18127318 (+)
G73231 NA non-coding downstream 629690 18127423 ~ 18127887 (+)
ubxn11 NA other upstream 31326 17456643 ~ 17461118 (+)
G73031 LOC103366415 other upstream 39876 17449585 ~ 17452568 (+)
G72750 LOC104952694,LOC106925895 other upstream 1420243 16018359 ~ 16072201 (+)
irx4a LOC103360443,LOC102233360,LOC103478376,LOC108232226,LOC101474805,LOC102784018,LOC102295185,LOC102202030,LOC104961814,LOC103145173 other upstream 1932152 15553464 ~ 15560292 (+)
LOC120561718 LOC107101581 other upstream 2859723 14626478 ~ 14632721 (+)
G73123 phactr4 other downstream 147780 17645513 ~ 17647186 (+)
paqr7b LOC107588505,LOC104938075,LOC103388542 other downstream 253197 17750930 ~ 17779130 (+)
kcnn4 kcnn4,LOC104953880,LOC100704922 other downstream 901323 18399056 ~ 18420721 (+)
LOC120562807 NA other downstream 957841 18455574 ~ 18461326 (+)
LOC120562806 NA other downstream 968695 18466428 ~ 18470078 (+)

Expression


Co-expression Network