gpatch3 (gpatch3)


Basic Information

Item Value
gene id gpatch3
gene name gpatch3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 17509056 ~ 17512860 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805496.1
ATGACGTTTTCtgtccaggaaaaaaaaaaaacaatcatggCGGACGCTGAAGCCGTAGCTCCGGTGTATTTGGCAATTAGTAACATTCCTGTTGCCTTTCACTCCGCTGACCTGAGAAATTATTTCAGTCAGTTCATAGAAAGTGGCGGGTTTCAGTGTTTTCACTACCGACATCGACCGGAGGTTCTTAGGGAGTCCGAAGTGTCCGAAAACACCGTGTGTGGTGACGGTGAGGAGGGTAGCTCCAAATCTTCGGAGACTGACCAAGGGACAGAAAACAGCTCCGCGAAGAAGCAGCAAGCGCTGAAGTCCTGCTGTTGTATCGCCTCACTTCATGCTAAAGATGCCGACAGATTCGTCAGGATGTATGCGGGGAATCACTGGATTGACTCGAAGGGGAACTGGCTGTCTAGACGTTGTGTTATTAAAAGAGTAAAGGTTTCACAGGACAAAGaTGATGGGTCATTCCCCTATAAATCAAAGTACGAGCAGCGGCACCGGGTGTCCTTAACAGAATGTTTCACAGAGGCTGACCTCAAAAGTTTATCCGAGCTGAATCCACCAGCTCTGATGCAGAATGGGAATGTGGGCACACCGGTGAAAGTGTTCCTACAGCTCATCCAATCCTGCCGACTGCCTCCGCGCCTCATCCGGAAGTTAGGCCTCACTTTCCCCAAGACCAGCTCGAATCGCCGTTACGGCAATGTACCTTTCCAGTATAAGGACAGTTGGACACTTCCAGCCACAGAAGAGACTATATTAACAGCTGCTGGACATGAAATATCAGGACCGGGAACTTTGACTGCTCCACTTTGGCGGCTAGCTGATCACACAGAAACAACAGAGACTGATGAGCCacagaaagaagaggaggaggatgcaCAGTCAAATGCAGATGATGATGATGACTACTGTGAGGAGTGGGAGCGCCATGAGGCTTTGCATGATGATGTAACGAGCCAGGAGCGAAGCAAAGAGAGGCTGTTCGAAGAGGAGATTGAGTTGAAGTGGGAGAAGGGCGGCTCAGGCCTGGTGTTCTACACTGACGCCCAGTACTGGCACAAGGAAGAAGGAGattttgatGAACAAACGGCAGACGACTGGGATGTTGACATGAGCGTTTACTACGATAAAGATGGAGGTGACATGGATGCCCGTGACTATGTCCGAATGCGATATGAAAAAAGGCTGAGGGTGGGTCTTGAAGATAGATCTGGACACAGTCAGTCTATTGGCAGCTTTGAGAGGTTCACAAAGggTTTTGGTCGTCGTTTGATGGAAAAGCAGGGCTGGAAGGATGGTGAAGGGTTAGGACACAGTCAGATTGGGATTCCTGACGCCCTTGAGAGTGAGGGCCAACATCCCAATTGTAAAAGAGGCTTTGGGTATCATGGAGATAAATTGCTCTTACATCCTGTAAAAAAGGCCAGGACAGATTTTCATATAACTACGGTGTATGATAAACCCAAAGACATCGATGGAGGGGACACCTTGCTGAGACGTCAACCAAACACTAGTATGAAGTACAGAGGCTGGCAGCCAGGTGGCAGCATTGGACCACGACGATGACTTCAAATTAAATGTTTCTTATTCATAGATTTTTTGTTACTCACATATTTGTCTCACTGtgttattaaaacatttcaaattgcTGACTCACTATCCCAAAAAAA

Function

symbol description
gpatch3 Predicted to enable nucleic acid binding activity. Acts upstream of or within camera-type eye development and cranial skeletal system development. Is expressed in head; musculature system; and otic vesicle. Orthologous to human GPATCH3 (G-patch domain containing 3).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805496.1 True 1673 mRNA 0.48 7 17509056 17512860

Neighbor

gene id symbol gene type direction distance location
kdf1a kdf1,LOC104937957 coding upstream 11323 17492444 ~ 17497733 (+)
LOC120562050 LOC103366409 coding upstream 17115 17489596 ~ 17491941 (+)
LOC120562051 tmem222 coding upstream 19582 17486166 ~ 17489474 (+)
wdtc1 wdtc1,LOC102795681 coding upstream 24203 17475568 ~ 17484853 (+)
cdcp1a NA coding upstream 63862 17439093 ~ 17445194 (+)
gpn2 gpn2 coding downstream 167 17513027 ~ 17517296 (+)
arid1aa arid1a coding downstream 7144 17520004 ~ 17535611 (+)
pigv pigv coding downstream 23670 17536530 ~ 17539422 (+)
zdhhc18a zdhhc18,LOC100695947,LOC102211057 coding downstream 28197 17541057 ~ 17550194 (+)
tent5ba fam46b,LOC102799042 coding downstream 49613 17562473 ~ 17567266 (+)
LOC120562054 NA non-coding upstream 4135 17500589 ~ 17504921 (+)
G73027 NA non-coding upstream 46029 17427828 ~ 17463027 (+)
G73019 NA non-coding upstream 105429 17392268 ~ 17403627 (+)
trnar-acg_16 NA non-coding upstream 140281 17368703 ~ 17368775 (+)
G72862 NA non-coding upstream 443145 17065589 ~ 17065911 (+)
G73186 NA non-coding downstream 411090 17923950 ~ 17926628 (+)
G73216 NA non-coding downstream 601855 18114715 ~ 18116323 (+)
G73230 LOC104960016 non-coding downstream 612134 18124994 ~ 18127318 (+)
G73231 NA non-coding downstream 614563 18127423 ~ 18127887 (+)
G73232 NA non-coding downstream 616159 18129019 ~ 18129219 (+)
ubxn11 NA other upstream 47938 17456643 ~ 17461118 (+)
G73031 LOC103366415 other upstream 56488 17449585 ~ 17452568 (+)
G72750 LOC104952694,LOC106925895 other upstream 1436855 16018359 ~ 16072201 (+)
irx4a LOC103360443,LOC102233360,LOC103478376,LOC108232226,LOC101474805,LOC102784018,LOC102295185,LOC102202030,LOC104961814,LOC103145173 other upstream 1948764 15553464 ~ 15560292 (+)
LOC120561718 LOC107101581 other upstream 2876335 14626478 ~ 14632721 (+)
G73123 phactr4 other downstream 132653 17645513 ~ 17647186 (+)
paqr7b LOC107588505,LOC104938075,LOC103388542 other downstream 238070 17750930 ~ 17779130 (+)
kcnn4 kcnn4,LOC104953880,LOC100704922 other downstream 886196 18399056 ~ 18420721 (+)
LOC120562807 NA other downstream 942714 18455574 ~ 18461326 (+)
LOC120562806 NA other downstream 953568 18466428 ~ 18470078 (+)

Expression


Co-expression Network