tent5ba (fam46b,LOC102799042)


Basic Information

Item Value
gene id tent5ba
gene name fam46b,LOC102799042
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 17562473 ~ 17567266 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805507.1
GGCTCTTTGCAGACTGACCGGATTTTAGCGGCACTCACCGGAGGAAACGACTGAACCCACTCTCTGACTCAACTAAGTTTTTCTACTCTTCACCACTACATTACTGATCGGAGCTCCTCACCGCTGACATCCACAGGAATATCTCTCTTGTGTTGAAGAGATAAGAGCTCAGTTGAGAGAAAGCGCTGATTCACATTCTGCagattagtatttttttttttgtgcaagttAACATCGCCATGTCTTGCGGTGATGTGTCGGATCAGAGTCGGCGGTTCTGTGTGTTGTCTTGGGATCAGGTGCAGCGCTTAGACTCGATCCTGGGGGAGGCTGTCCCCATCCACGGCCGAGGAAACTTCCCGACTCTGTCCGTGCAACCACGGCAAATTGTTCAGGTGGTGCGGGCGAGGCTGGAGGAGAGGGGTGTGTGCGTTAAGGACGTGAGGCTGAACGGCTCGGCTGCCAGCTATGTGCTCCATCAGGATACTGGGTTGGGCTATAAGGACCTTGACCTGATCTTTGGCGTATCTCTGAAAGATGATCAGGCTTTCCGTCTGGTGAAGGACGTTGTGCTGGACTGCCTGTTTGACTTCTTGCCAGCCGGGGTCTCTAGGGAGCGCATCACGGCACTGACTCTCAAAGAGGCCTATGTACAGAAACTGGTGAAAGTCTGTAATGACACGGACCGCTGGAGCCTCATCTCGCTGTCCAACAACACAGGAAAGAATGTGGAGTTAAAATTTGTGGACTCTTTACGGCGGCAGTTCGAATTCAGCGTGGACTCCTTCCAGATTTGCCTCGATTCTTTGCTCTTATTTGACCGCTGCTCCGAGACGCCCATGTCTGAGAGCTTTCACCCCACTGTGATCGGAGAGAGTGTGTATGGGGACTTCAAGGAGGCCATGGAGCACCTGTGCCAGAGGACCATAGCTACACGCAGCCCGGAAGAAATCAGAGGGGGCGGCTTATTGAAGTACTGCCACCTGCTGGTGCGAGGGTTCACACCCTCCTCTGAAGCGGACATGAAGCACATGCAGCGCTACATGTGCTCGCGTTTCTTCATTGACTTCTCTGACATAAGAGAACAGCAGAGGAAACTGGAAGCCTACCTGCAAAACCACTTTGCTGGCATGGAGCACAAACGGTACGAGTGCCTGATGACTCTTCACGAAGTAGTGAACGAGAGCACCGTGTGTCTGATGGGCCACGAGCGGCGCCAGACGCTCAGCCTCATCTCCATGCTGGCGCTGAAGGTGCTGGCTGAGCAGAACGCCATCCCCACTGTAACTAATGTCACGTGTTACTACCAGCCAGCTCCGTACGTGCAGGACATCAACTTCAGTAATTACTATATTGCACATGTGCAGCCGCCGCAGGTTTCACCGTGCAGTAATTCATATCGGACGTGGCTGCCCTGTAGCTGAACTGGCTGTGGGAAGAGCAGAAGTGTCTCAACCGCTCTTTATCTTTTCAAAGGAAGGggactgggaaaaaaaagaaaaaagaaacctaTTTTTGCCAAATGTGACTTGACTAAAACAATCCTGTGCTGCTGTACATCTGATTGAGCCAACGCATACATTTTTCTCACTTGTATTGTCTTGCAAAACATCTGTAAGATTGCTGGTCATTTCTGAGATGTAGTAGTATTAAAATCTTTATTAagcttttatatatgtcaaaaatacatttttatggaAACACACATTGAAGCTGGTGTTATTTTCATACTCtggctttattttcttttttaattacataCTGGACCAAAGATGTATTTGTTGTTCAGAAAGGGAATGTTGTTATGATTCCAAGTGCCTAAAATGAACCATGAAAAACATCTGTAAAATGAGAACTGTGCATTCAGTGTTTTCTAGattactctgtctctcttttcagGAACAGAAGCATTCATTTTTGTgagattaaaaaaaggaaaaacta

Function

NR:

description
protein FAM46A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805507.1 True 1944 mRNA 0.48 2 17562473 17567266

Neighbor

gene id symbol gene type direction distance location
zdhhc18a zdhhc18,LOC100695947,LOC102211057 coding upstream 12279 17541057 ~ 17550194 (+)
pigv pigv coding upstream 23051 17536530 ~ 17539422 (+)
arid1aa arid1a coding upstream 26862 17520004 ~ 17535611 (+)
gpn2 gpn2 coding upstream 45177 17513027 ~ 17517296 (+)
gpatch3 gpatch3 coding upstream 49613 17509056 ~ 17512860 (+)
tcea3 tcea3,LOC103388456 coding downstream 16757 17584023 ~ 17593027 (+)
oprd1b oprd1,LOC104947907,LOC104938665,LOC103361913 coding downstream 50482 17617748 ~ 17623689 (+)
LOC120561605 NA coding downstream 172566 17739832 ~ 17741380 (+)
stmn1b stmn1,LOC100709726,LOC101465203,LOC105919219,LOC108245970,LOC102218266 coding downstream 174620 17741886 ~ 17747026 (+)
si:dkey-34d22.1 LOC103360192 coding downstream 525037 18092303 ~ 18105749 (+)
LOC120562054 NA non-coding upstream 57552 17500589 ~ 17504921 (+)
G73027 NA non-coding upstream 99446 17427828 ~ 17463027 (+)
G73019 NA non-coding upstream 158846 17392268 ~ 17403627 (+)
trnar-acg_16 NA non-coding upstream 193698 17368703 ~ 17368775 (+)
G72862 NA non-coding upstream 496562 17065589 ~ 17065911 (+)
G73186 NA non-coding downstream 356684 17923950 ~ 17926628 (+)
G73216 NA non-coding downstream 547449 18114715 ~ 18116323 (+)
G73230 LOC104960016 non-coding downstream 557728 18124994 ~ 18127318 (+)
G73231 NA non-coding downstream 560157 18127423 ~ 18127887 (+)
G73232 NA non-coding downstream 561753 18129019 ~ 18129219 (+)
ubxn11 NA other upstream 101355 17456643 ~ 17461118 (+)
G73031 LOC103366415 other upstream 109905 17449585 ~ 17452568 (+)
G72750 LOC104952694,LOC106925895 other upstream 1490272 16018359 ~ 16072201 (+)
irx4a LOC103360443,LOC102233360,LOC103478376,LOC108232226,LOC101474805,LOC102784018,LOC102295185,LOC102202030,LOC104961814,LOC103145173 other upstream 2002181 15553464 ~ 15560292 (+)
LOC120561718 LOC107101581 other upstream 2929752 14626478 ~ 14632721 (+)
G73123 phactr4 other downstream 78247 17645513 ~ 17647186 (+)
paqr7b LOC107588505,LOC104938075,LOC103388542 other downstream 183664 17750930 ~ 17779130 (+)
kcnn4 kcnn4,LOC104953880,LOC100704922 other downstream 831790 18399056 ~ 18420721 (+)
LOC120562807 NA other downstream 888308 18455574 ~ 18461326 (+)
LOC120562806 NA other downstream 899162 18466428 ~ 18470078 (+)

Expression


Co-expression Network