eif3ea (eif3e,LOC101480544,LOC102302331,LOC100691937)


Basic Information

Item Value
gene id eif3ea
gene name eif3e,LOC101480544,LOC102302331,LOC100691937
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 10621192 ~ 10656796 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805508.1
TTTACACAGCTGCAACACACATCCGTTTCCCTTTCCCCGGAGCAAAGATGGCGGAATACGACCTCACCACCAAAATTGCCCACTTTTTAGACCGTCATCTCGTTTTTCCTCTGTTGGAGTTCCTGTCTGTCAAAGAGATCTACAATGAGCAGGAGCTGCTTCATGGAAAACTGGACCTCCTCAGTGACACAAACATGGTGGACTTCGCCATGGATGTGTACAGAAGCCTTTTTTCTGAGAAGGAAATTCCCCATACTCTGCGGGAGAAGAGGACAGAGGTTGTGGCCCAGCTGAAGCAGCTGCAGTCAGAGACAGAACCCATTGTGAAAATGTTTGAAGACCCAGAGACAACAAGGCAGATGCAGTCCACCAGggaTGGACGAATGCTCTTTGACTATTTGGCAGAAAAACATAACTTTCGTCAGGAGTACTTGGACACGCTGTACAGATATGCCAAGTTCCAGTATGAGTGTGGAAACTACTCTGGTGCTGCAGAATACCTCTACTTCTTCCGTGTCCTGGTCCCATCTACAGACAGGAATGCCCTGAACTCTCTGTGGGGCAAGCTGGCCTCTGAGATCCTGATGCAGAACTGGGAGGCTGCCATGGAGGACCTCACCCGCCTGAGAGAGACAATCGATAACAATTCTGTCACGTCCCCTCTGCAGTCTCTCCAGCAGAGGACATGGCTCATTCACtggtctctctttgtcttcttcAACCACCCCAAGGGCAGAGACAATATCATTGAGCTCTTTCTGTATCAGCCACAATACCTCAACGCTATCCAGACTATGTGCCCACACATCTTGCGTTACCTAACCACAGCCATCATTACAAACAAGGATGTCCGCAAGCGTCGGCAAGTCCTGAAGGATTTGGTGAAAGTTATTCAGCAGGAATCTTACACCTACAAAGATCCAATTACAGAGTTTGTGGAGTGCCTGTACGTGAACTTTGACTTTGACAGTGCTCAGAAGAAACTCCGGGAGTGTGAGTCGGTTCTTGTGAATGACTTCTTCCTGGTTGCTTGCCTGGAGGACTTCATCGAGAATGCCCGCCTCTTCATCTTTGAGACCTTCTGCAGAATTCACCAGTGCATTAGCATCAGCATGCTGGCAGACAAACTGAACATGACGCCCGAGGATGCTGAGAGATGGATCGTCAATCTCATCCGCAACGCCCGGCTGGATGCAAAGATAGACTCCAAACTGGGCCATGTGGTCATGGGGAACAACGCCATATCACCTTACCAGCAGGTGATTGAGAAGACCAAGAGCCTCTCGTTCCGCAGCCAAATGTTGGCCATGAACATTGAGAAAAAGCAGGCCCAGAGCACCAAGAATGAGACACCCAACTGGGCAGGTCAGGAAACTGGATTTTAGCCACACGCTGAAGATGAATCCATCCTACTCATtgttaccttttttttccacacttGTATCTCAAGGAGCACAGTGCTTTTTTGCACTCTGCTCAAGTCATcacaaattcaataaaagtgaCCAACAAGAAGCATTTTCA

Function

symbol description
eif3e Enables protein N-terminus binding activity. Contributes to translation initiation factor activity. Involved in positive regulation of mRNA binding activity; regulation of gene expression; and translational initiation. Located in cytosol and nucleus. Part of eukaryotic translation initiation factor 3 complex. Colocalizes with PML body.

NR:

description
PREDICTED: eukaryotic translation initiation factor 3 subunit E-A

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0043010 camera-type eye development biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0043473 pigmentation biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03250 EIF3E, INT6; translation initiation factor 3 subunit E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805508.1 True 1524 mRNA 0.48 13 10621192 10656796

Neighbor

gene id symbol gene type direction distance location
LOC120561655 tmem74,LOC103359617 coding upstream 102201 10516857 ~ 10518991 (+)
LOC120562578 NA coding upstream 242438 10368865 ~ 10378754 (+)
LOC120562586 LOC104935658,LOC103355652,LOC101471248 coding upstream 263415 10328164 ~ 10357777 (+)
sim1a sim1,LOC103355653,LOC103388874,LOC102313558 coding upstream 380116 10215493 ~ 10241076 (+)
ascc3 ascc3 coding upstream 420787 10007275 ~ 10200405 (+)
rspo2 rspo2 coding downstream 5682 10662478 ~ 10729121 (+)
macf1b LOC102795676,LOC102290681,LOC101484559,LOC100704065,LOC104943360 coding downstream 305094 10961890 ~ 11002470 (+)
LOC120561921 LOC104943362,LOC103369138 coding downstream 354184 11010980 ~ 11016582 (+)
LOC120562012 LOC103388795,LOC103359769 coding downstream 942318 11599114 ~ 11616059 (+)
LOC120562594 znf516 coding downstream 1064320 11721116 ~ 11768925 (+)
G71738 NA non-coding upstream 2617 10618257 ~ 10618575 (+)
G71723 emc2 non-coding upstream 29786 10580160 ~ 10591406 (+)
G71609 NA non-coding upstream 418601 10201676 ~ 10202591 (+)
G71607 NA non-coding upstream 617499 10003481 ~ 10003693 (+)
G71591 NA non-coding upstream 791885 9828594 ~ 9829307 (+)
G71741 NA non-coding downstream 87215 10744011 ~ 10744271 (+)
LOC120562885 NA non-coding downstream 91327 10748123 ~ 10752652 (+)
G71826 NA non-coding downstream 463123 11119919 ~ 11120208 (+)
G71835 NA non-coding downstream 505900 11162696 ~ 11163045 (+)
G71838 NA non-coding downstream 530326 11187122 ~ 11187358 (+)
G71610 NA other upstream 412995 10207415 ~ 10208197 (+)
trnay-gua_42 NA other upstream 1771472 8849632 ~ 8849720 (+)
trnay-gua_41 NA other upstream 1771855 8849249 ~ 8849337 (+)
trnay-gua_40 NA other upstream 1772621 8848483 ~ 8848571 (+)
trnay-gua_39 NA other upstream 1773711 8847392 ~ 8847481 (+)
LOC120561920 LOC106676202,LOC102303534 other downstream 89212 10746008 ~ 10751849 (+)
LOC120562569 LOC104943359,LOC103359623,LOC101482188,LOC107100615,LOC106961743 other downstream 128858 10785654 ~ 10961130 (+)
G71743 NA other downstream 163499 10820295 ~ 10821500 (+)
depdc1b depdc1b,LOC103388656,LOC101486657 other downstream 810549 11467345 ~ 11482423 (+)
mbpb mbp,LOC104918400 other downstream 880388 11537184 ~ 11599226 (+)

Expression


Co-expression Network