LOC120562069 (tmem107)


Basic Information

Item Value
gene id LOC120562069
gene name tmem107
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22107943 ~ 22110135 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805516.1
GCGTCCGGATCCTTTGGATATTGGTCGTTGGTGAAACCGGACTGTAATTAAGAATGCACTGACTGATGTCGGTTGTTGTAGCAACCGCCTCACAGCGTgggcattttacattttatctgTAGTTGGTTGTGTTGGTAGTAATAGAAGCTAATTGAAATATTAGTTGTAACGATATGTTCGCATTTTTCTGCGTTTAACGTCGCGCAGTGTTTTTGTTCACCTTGGATATAAGTTGTGTTAGCCTCACGGTCAGACTGCAGCGAAGTGCTTACATTAGTTGAGCAAAACACGCTAACCTCAATTCTTAAATTGCAGTAACGTTGCATTTTAGTATACTCGTTGTCTGAttaagtaattagttactcagcatgTCGGCTGTCAGCAGCCTCGTCCCTGCACGGTTCTTGACTATCACAGCTCACCTTGTCATCGTCATCACAATATTTTGGTCGAGGGAAAACAACGTAAAGGCTTGCTTGCCTTTGGATTTCACGCAAGCGCAGTATGACGATGAAGACAGGAAgtTGGTGGTGGCATTGGCAGTCACCCTGGGTCTGTTTGCTATAGAATTGGCTGGGTTCTTCTCAGGAGTGTCCATGTTCAACTGCAGCCAAGGTCTCCTGTCACTGGCTGTCCACTGCAGCGCATCTGTATCcttgtctttctttgtgtttgagaAGTGGGAATGCTGGACATATTGGGTTATTTTTGCCGCCTGCagTGTGCTACCTGCTTTTGTGGAGATTCTTCTGTTTATAGCTGTTTTTGGACTGAAGAAGAAGCCATTGTGAAAGACTAAATGCTACAAATTAGTGTGGACGTGGACATCTTTCTCACTGTATCAACAAATACTGTCGCTACAGAAGGTCTGTGATTCAATAATAATGTGCAGAGGAATGAACTAGAAACCTTGTTTAACTGTGCACACACTGCACCAACAAACAAAAGGATATACAAGCTGCTCTCTGTCcgtattgttttaaaaaaatatatatatttttatacatttttaatgaaataGATTAAGAAAAGGCAGTCACTTGCTAGTGCTAATTTGTCAGTAAATGTCGATGTGGTTTTCTATTCTCAGTTTATTTGTCATTTCCATGCAAAGTCTTAGAATGCTATTGTAATCCAatatacattttgaacaaattcTTTCTTAAACTGGT
>XM_039805517.1
GCGTCCGGATCCTTTGGATATTGGTCGTTGGTGAAACCGGACTGTAATTAAGAATGCACTGACTGATGTCGGTTGTTGTAGCAACCGCCTCACAGCGTgggcattttacattttatctgTAGTTGGTTGTGTTGGTAGTAATAGAAGCTAATTGAAATATTAGTTGTAACGATATGTTCGCATTTTTCTGCGTTTAACGTCGCGCAGTGTTTTTGTTCACCTTGGATATAAGTTGTGTTAGCCTCACGGTCAGACTGCAGCGAAGTGCTTACATTAGTTGAGCAAAACACGCTAACCTCAATTCTTAAATTGCAGTAACGTTGCATTTTAGTATACTCGTTGTCTGAttaagtaattagttactcagcatgTCGGCTGTCAGCAGCCTCGTCCCTGCACGGTTCTTGACTATCACAGCTCACCTTGTCATCGTCATCACAATATTTTGGTCGAGGGAAAACAACGTAAAGGCTTGCTTGCCTTTGGATTTCACGCAAGCGCAGTATGACGATGAAGACAGGAAgtTGGTGGTGGCATTGGCAGTCACCCTGGGTCTGTTTGCTATAGAATTGGCTGGGTTCTTCTCAGGAGTGTCCATGTTCAACTGCAGCCAAGGTCTCCTGTCAACAGGAGTCCATGCCAGTGCCTCAGTTGCTCTGCTTTTCTTTCTATTTGAGCAGTGGGAGTGTGACATCTACTGGTGGATCCTTGCCATTTGCAGTGTGCTACCTGCTTTTGTGGAGATTCTTCTGTTTATAGCTGTTTTTGGACTGAAGAAGAAGCCATTGTGAAAGACTAAATGCTACAAATTAGTGTGGACGTGGACATCTTTCTCACTGTATCAACAAATACTGTCGCTACAGAAGGTCTGTGATTCAATAATAATGTGCAGAGGAATGAACTAGAAACCTTGTTTAACTGTGCACACACTGCACCAACAAACAAAAGGATATACAAGCTGCTCTCTGTCcgtattgttttaaaaaaatatatatatttttatacatttttaatgaaataGATTAAGAAAAGGCAGTCACTTGCTAGTGCTAATTTGTCAGTAAATGTCGATGTGGTTTTCTATTCTCAGTTTATTTGTCATTTCCATGCAAAGTCTTAGAATGCTATTGTAATCCAatatacattttgaacaaattcTTTCTTAAACTGGT

Function

symbol description
tmem107 Predicted to be involved in non-motile cilium assembly and protein localization to ciliary transition zone. Predicted to act upstream of or within cell projection organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of MKS complex. Human ortholog(s) of this gene implicated in Meckel syndrome 13 and orofaciodigital syndrome XVI. Orthologous to human TMEM107 (transmembrane protein 107).

NR:

description
PREDICTED: transmembrane protein 107 isoform X1

GO: NA

KEGG:

id description
K22764 TMEM107; transmembrane protein 107

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805516.1 False 1172 mRNA 0.41 5 22107943 22110135
XM_039805517.1 True 1172 mRNA 0.41 5 22107943 22110135

Neighbor

gene id symbol gene type direction distance location
efna1b efna1,LOC104918192 coding upstream 27641 22069006 ~ 22080302 (+)
efna3b efna3,LOC105928532,LOC103478166,LOC103140801,LOC102234981 coding upstream 74676 21975192 ~ 22033267 (+)
flad1 flad1,LOC102778463 coding upstream 207291 21890529 ~ 21900652 (+)
chrnb2 chrnb2,LOC102780733,LOC104959165 coding upstream 272592 21818053 ~ 21835351 (+)
she LOC101483326,LOC102307252,LOC102202678 coding upstream 289721 21805074 ~ 21818222 (+)
krtcap2 krtcap2 coding downstream 381 22110516 ~ 22113062 (+)
s100a10b LOC104962190 coding downstream 3984 22114119 ~ 22115560 (+)
s100w LOC104962188,LOC103388219,LOC106537129,LOC102230839 coding downstream 11569 22121704 ~ 22124437 (+)
adar adar coding downstream 57330 22167465 ~ 22183428 (+)
rab13 rab13 coding downstream 162957 22273092 ~ 22278899 (+)
G74673 NA non-coding upstream 71284 22036278 ~ 22036659 (+)
LOC120562851 NA non-coding upstream 382238 21724948 ~ 21725705 (+)
G74288 NA non-coding upstream 815563 21291042 ~ 21292380 (+)
G74287 NA non-coding upstream 817629 21289553 ~ 21290314 (+)
G74286 NA non-coding upstream 818568 21289171 ~ 21289375 (+)
G74729 NA non-coding downstream 5481 22115616 ~ 22116026 (+)
G74732 NA non-coding downstream 9603 22119738 ~ 22121346 (+)
G74737 NA non-coding downstream 19517 22129652 ~ 22129914 (+)
G74760 NA non-coding downstream 73648 22183783 ~ 22184037 (+)
G74764 NA non-coding downstream 132682 22242817 ~ 22243033 (+)
slc50a1 slc50a1 other upstream 15980 22083669 ~ 22091963 (+)
G74633 tuft1,LOC102781808 other upstream 337657 21769548 ~ 21770286 (+)
them4 LOC106592246,LOC104959154,LOC101466288,LOC107096308,LOC100702377,LOC105029233,LOC106575342 other upstream 504485 21599034 ~ 21603458 (+)
crot acbd7,crot,LOC102783617,LOC101470173 other upstream 692049 21403035 ~ 21415894 (+)
LOC120563169 NA other upstream 771278 21331412 ~ 21336665 (+)
LOC120561539 NA other downstream 22443 22132578 ~ 22136234 (+)
LOC120561537 NA other downstream 27412 22137547 ~ 22139223 (+)
snx27b snx27,LOC102196713,LOC102288812 other downstream 29645 22139780 ~ 22154684 (+)
kcnn3 kcnn3,LOC104958859,LOC106930148,LOC106962094 other downstream 87577 22197712 ~ 22248527 (+)
rusc1 LOC104958857 other downstream 154804 22264939 ~ 22312520 (+)

Expression


Co-expression Network