krtcap2 (krtcap2)


Basic Information

Item Value
gene id krtcap2
gene name krtcap2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22110516 ~ 22113062 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805518.1
TACTTATATAAATTAATGTATGTAGAACTGAAACATGAGACACATGTATCATGACTTATGACCCTGCGGTTTATTCGGCAAAAAAATGTCAATCTAACCAGCACAAAGGTATTAGCATGACAACAAagtcctctcttcctcccattGACATATTCAAGACTCCGCCCACTGGTCCTACCTGTCATTTGGACCGGGTGGTAAGGTTTTTAGTTCCTAGAGCCTGGACATTAAGTTGCCAAGTTAAACCTAATTCCTCTCTGTTTCATTACGAGGACTCTAATATCGAATCATGGCAGCGGTGAACACGGGCACCTCTCTAGTGCTGTCCAGTCTGCTGTCAGTGCTGGTGTTTGCTGGGATGCAGATGTTCAGTAAGCAGCTGGGATCCACTGAGTGGCTTACCATCCTGGGAGGTTTCCTGGGCTCAGTCCTCTTCATCTGCTCCCTCACTGCATTTAATAATCTAGAAAATCTGATTTTCGGGAAGGGATTCCAAGCCAAGATATTCCCAGAGATTCTGCTGTGCCTGTGTCTGGCACTGTTTGCCTCTGGTCTGGTACACCGTGTCTGTGTCACCACATGCCTGATATTCTCCCTTTTCGCCCTGTACTACATCAACAAAGTATCTGCCGCTCTCTACCAAGCAGCTGTTCCCGCAGTAACACCAGCCAAGGCTGCCAGCAAAGGCAAAAGGAAGAACTGATGAATCTGTTGGATCCCACTTGTATCCAGTGAATCAGTTATTGCTACCCAGGTGCTGATGGCCAGTGCAACACAGCAGTTGcatattttgacatttgtgtctTGAATCCATAACCCCCTGCaggctttttaaagattatttggAAAGTGACTGTTAGTTCAATGGCTACAAGTTTAAAACCATCATAAAcacatagttttttttacaatgatCTCAAATTCAATCAAGGCCATAAAAAAAGCTGTCAACATTCCATTGATAACCTTTTCCTCAGCACTGTTTTTTACAGTGATTGCAAAGAGATTCAACCCTCCCATCACTTTATCTGTGTATTCATCAGCACATCAAgttgattttttgtttttgtttaattcatTTTGTAATTAAACTCTGTAAAAGACTTTGAA
>XM_039805519.1
AAATTAATGTATGTAGAACTGAAACATGAGACACATGTATCATGACTTATGACCCTGCGGTTTATTCGGCAAAAAAATGTCAATCTAACCAGCACAAAGGTATTAGCATGACAACAAagtcctctcttcctcccattGACATATTCAAGACTCCGCCCACTGGTCCTACCTGTCATTTGGACCGGGTGGTAAGGTTTTTAGTTCCTAGAGCCTGGACATTAAGTTGCCAAGTTAAACCTAATTCCTCTCTGTTTCATTACGAGGACTCTAATATCGAATCATGGCGGTGAACACGGGCACCTCTCTAGTGCTGTCCAGTCTGCTGTCAGTGCTGGTGTTTGCTGGGATGCAGATGTTCAGTAAGCAGCTGGGATCCACTGAGTGGCTTACCATCCTGGGAGGTTTCCTGGGCTCAGTCCTCTTCATCTGCTCCCTCACTGCATTTAATAATCTAGAAAATCTGATTTTCGGGAAGGGATTCCAAGCCAAGATATTCCCAGAGATTCTGCTGTGCCTGTGTCTGGCACTGTTTGCCTCTGGTCTGGTACACCGTGTCTGTGTCACCACATGCCTGATATTCTCCCTTTTCGCCCTGTACTACATCAACAAAGTATCTGCCGCTCTCTACCAAGCAGCTGTTCCCGCAGTAACACCAGCCAAGGCTGCCAGCAAAGGCAAAAGGAAGAACTGATGAATCTGTTGGATCCCACTTGTATCCAGTGAATCAGTTATTGCTACCCAGGTGCTGATGGCCAGTGCAACACAGCAGTTGcatattttgacatttgtgtctTGAATCCATAACCCCCTGCaggctttttaaagattatttggAAAGTGACTGTTAGTTCAATGGCTACAAGTTTAAAACCATCATAAAcacatagttttttttacaatgatCTCAAATTCAATCAAGGCCATAAAAAAAGCTGTCAACATTCCATTGATAACCTTTTCCTCAGCACTGTTTTTTACAGTGATTGCAAAGAGATTCAACCCTCCCATCACTTTATCTGTGTATTCATCAGCACATCAAgttgattttttgtttttgtttaattcatTTTGTAATTAAACTCTGTAAAAGACTTTGAA

Function

symbol description
krtcap2 Predicted to be involved in protein N-linked glycosylation via arginine. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in axis; cleithrum; liver; and polster. Orthologous to human KRTCAP2 (keratinocyte associated protein 2).

NR:

description
keratinocyte-associated protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805518.1 True 1110 mRNA 0.42 5 22110516 22113062
XM_039805519.1 False 1098 mRNA 0.43 5 22110525 22113062

Neighbor

gene id symbol gene type direction distance location
LOC120562069 tmem107 coding upstream 381 22107943 ~ 22110135 (+)
efna1b efna1,LOC104918192 coding upstream 30214 22069006 ~ 22080302 (+)
efna3b efna3,LOC105928532,LOC103478166,LOC103140801,LOC102234981 coding upstream 77249 21975192 ~ 22033267 (+)
flad1 flad1,LOC102778463 coding upstream 209864 21890529 ~ 21900652 (+)
chrnb2 chrnb2,LOC102780733,LOC104959165 coding upstream 275165 21818053 ~ 21835351 (+)
s100a10b LOC104962190 coding downstream 1057 22114119 ~ 22115560 (+)
s100w LOC104962188,LOC103388219,LOC106537129,LOC102230839 coding downstream 8642 22121704 ~ 22124437 (+)
adar adar coding downstream 54403 22167465 ~ 22183428 (+)
rab13 rab13 coding downstream 160030 22273092 ~ 22278899 (+)
fdps fdps coding downstream 176174 22289236 ~ 22295905 (+)
G74673 NA non-coding upstream 73857 22036278 ~ 22036659 (+)
LOC120562851 NA non-coding upstream 384811 21724948 ~ 21725705 (+)
G74288 NA non-coding upstream 818136 21291042 ~ 21292380 (+)
G74287 NA non-coding upstream 820202 21289553 ~ 21290314 (+)
G74286 NA non-coding upstream 821141 21289171 ~ 21289375 (+)
G74729 NA non-coding downstream 2554 22115616 ~ 22116026 (+)
G74732 NA non-coding downstream 6676 22119738 ~ 22121346 (+)
G74737 NA non-coding downstream 16590 22129652 ~ 22129914 (+)
G74760 NA non-coding downstream 70721 22183783 ~ 22184037 (+)
G74764 NA non-coding downstream 129755 22242817 ~ 22243033 (+)
slc50a1 slc50a1 other upstream 18553 22083669 ~ 22091963 (+)
G74633 tuft1,LOC102781808 other upstream 340230 21769548 ~ 21770286 (+)
them4 LOC106592246,LOC104959154,LOC101466288,LOC107096308,LOC100702377,LOC105029233,LOC106575342 other upstream 507058 21599034 ~ 21603458 (+)
crot acbd7,crot,LOC102783617,LOC101470173 other upstream 694622 21403035 ~ 21415894 (+)
LOC120563169 NA other upstream 773851 21331412 ~ 21336665 (+)
LOC120561539 NA other downstream 19516 22132578 ~ 22136234 (+)
LOC120561537 NA other downstream 24485 22137547 ~ 22139223 (+)
snx27b snx27,LOC102196713,LOC102288812 other downstream 26718 22139780 ~ 22154684 (+)
kcnn3 kcnn3,LOC104958859,LOC106930148,LOC106962094 other downstream 84650 22197712 ~ 22248527 (+)
rusc1 LOC104958857 other downstream 151877 22264939 ~ 22312520 (+)

Expression


Co-expression Network