Gene
RNA
| Item | Value |
|---|---|
| gene id | rab13 |
| gene name | rab13 |
| gene type | coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053118.1 |
| NCBI id | CM020915.1 |
| chromosome length | 43092710 |
| location | 22273092 ~ 22278899 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| rab13 | Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within angiogenesis. Predicted to be located in several cellular components, including cytoplasmic vesicle; lateral plasma membrane; and trans-Golgi network. Predicted to be active in cytoplasmic vesicle and plasma membrane. Is expressed in notochord; pectoral fin musculature; vein; and ventral mesoderm. Orthologous to human RAB13 (RAB13, member RAS oncogene family). |
| description |
|---|
| PREDICTED: ras-related protein Rab-13 |
| id | name | namespace |
|---|---|---|
| GO:0035767 | endothelial cell chemotaxis | biological_process |
| GO:0032869 | cellular response to insulin stimulus | biological_process |
| GO:0007264 | small GTPase mediated signal transduction | biological_process |
| GO:0070830 | bicellular tight junction assembly | biological_process |
| GO:0001525 | angiogenesis | biological_process |
| GO:0044795 | trans-Golgi network to recycling endosome transport | biological_process |
| GO:0010737 | protein kinase A signaling | biological_process |
| GO:0015031 | protein transport | biological_process |
| GO:0006184 | obsolete GTP catabolic process | biological_process |
| GO:0032456 | endocytic recycling | biological_process |
| GO:1902463 | protein localization to cell leading edge | biological_process |
| GO:0030866 | cortical actin cytoskeleton organization | biological_process |
| GO:0031175 | neuron projection development | biological_process |
| GO:0032593 | insulin-responsive compartment | cellular_component |
| GO:0030139 | endocytic vesicle | cellular_component |
| GO:0043005 | neuron projection | cellular_component |
| GO:0005794 | Golgi apparatus | cellular_component |
| GO:0005802 | trans-Golgi network | cellular_component |
| GO:0055038 | recycling endosome membrane | cellular_component |
| GO:0005923 | bicellular tight junction | cellular_component |
| GO:0030027 | lamellipodium | cellular_component |
| GO:0016328 | lateral plasma membrane | cellular_component |
| GO:0030658 | transport vesicle membrane | cellular_component |
| GO:0003924 | GTPase activity | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| id | description |
|---|---|
| K06109 | RAB13; Ras-related protein Rab-13 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_039805553.1 | True | 2454 | mRNA | 0.39 | 8 | 22273092 | 22278899 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| adar | adar | coding | upstream | 89664 | 22167465 ~ 22183428 (+) |
| s100w | LOC104962188,LOC103388219,LOC106537129,LOC102230839 | coding | upstream | 148655 | 22121704 ~ 22124437 (+) |
| s100a10b | LOC104962190 | coding | upstream | 157532 | 22114119 ~ 22115560 (+) |
| krtcap2 | krtcap2 | coding | upstream | 160030 | 22110516 ~ 22113062 (+) |
| LOC120562069 | tmem107 | coding | upstream | 162957 | 22107943 ~ 22110135 (+) |
| fdps | fdps | coding | downstream | 10337 | 22289236 ~ 22295905 (+) |
| dap3 | dap3 | coding | downstream | 53517 | 22332416 ~ 22338933 (+) |
| gba | gba | coding | downstream | 60730 | 22339629 ~ 22345550 (+) |
| polr3c | polr3c | coding | downstream | 78892 | 22357791 ~ 22366153 (+) |
| LOC120562192 | LOC104934671 | coding | downstream | 169620 | 22448519 ~ 22455722 (+) |
| G74769 | NA | non-coding | upstream | 17614 | 22255271 ~ 22255478 (+) |
| G74765 | NA | non-coding | upstream | 27329 | 22245489 ~ 22245763 (+) |
| G74764 | NA | non-coding | upstream | 30059 | 22242817 ~ 22243033 (+) |
| G74760 | NA | non-coding | upstream | 89055 | 22183783 ~ 22184037 (+) |
| G74737 | NA | non-coding | upstream | 143178 | 22129652 ~ 22129914 (+) |
| G75042 | NA | non-coding | downstream | 639853 | 22918752 ~ 22920103 (+) |
| G75045 | NA | non-coding | downstream | 645693 | 22924592 ~ 22925155 (+) |
| G75065 | NA | non-coding | downstream | 703993 | 22982892 ~ 22987322 (+) |
| G75069 | NA | non-coding | downstream | 715521 | 22994420 ~ 22994706 (+) |
| G75077 | LOC104960445 | non-coding | downstream | 737908 | 23016807 ~ 23018595 (+) |
| kcnn3 | kcnn3,LOC104958859,LOC106930148,LOC106962094 | other | upstream | 24565 | 22197712 ~ 22248527 (+) |
| snx27b | snx27,LOC102196713,LOC102288812 | other | upstream | 118408 | 22139780 ~ 22154684 (+) |
| LOC120561537 | NA | other | upstream | 133869 | 22137547 ~ 22139223 (+) |
| LOC120561539 | NA | other | upstream | 136858 | 22132578 ~ 22136234 (+) |
| slc50a1 | slc50a1 | other | upstream | 181129 | 22083669 ~ 22091963 (+) |
| fam189b | fam189b,LOC102796117 | other | downstream | 657 | 22279556 ~ 22288294 (+) |
| rprd2b | NA | other | downstream | 191079 | 22469978 ~ 22489944 (+) |
| celf3b | LOC104944900,LOC100708447,LOC107088821,LOC107379582 | other | downstream | 281045 | 22559944 ~ 22585572 (+) |
| arnt | NA | other | downstream | 331119 | 22610018 ~ 22625953 (+) |
| LOC120562537 | NA | other | downstream | 381580 | 22660479 ~ 22667885 (+) |
