trim35-28 (LOC102796434)


Basic Information

Item Value
gene id trim35-28
gene name LOC102796434
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 25075681 ~ 25081791 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805575.1
ACTAGAGGGCGGTGCTGTAGGAACCTCGACCAGGTTTGCATCCTGTCACTGAAACAAGGAAAAAGCAGAAACCAACTCGACGGGTGCTCCGCTGTGATCGAGCAGttcgagtttttttttttactttctaaaACTGTCGCCGATactattatttttcactttttttgtgaGCGTAAGCAAACTGGTGAAGCCTTGACATATTACACAGAGCCAAGTGAGTGCGTATTTTTCTGTGTATGCGTCAGTTTGGGATTTCCTCAATAGGTAAAGTAAACTGAAGTGGGCCCGTGAAGCTATGGCTGACAGTATGGACGAAGACGTACCGGAAGAACCTTTACCTCTCCAGCAGGACCTGACCTGCCCCGTGTGTCAGGGCATTTTCCAGGACCCCGTGCTGCTGCCCTGCAGCCACAGCTTCTGTCGGGGGTGTCTCCAGAAAAGTATTCAGTACAACAAGAGGTGTCCCTTGTGCAGGGACGAGTTTGAGGAAGGGCAGGCCATCTCCAACCGCGCGCTGAGCAGCGCGTGTGAGTCCTTCCTCAAACAGTCCAACAGCCGGTCGAACCGGAAACGTCCCAGCGAGGACACCTGTAACCTGCACCTGAAGCCGCTGGAGCTGTACTGTGAGAAGGACGAGGAGCCCGTGTGTGTGGACTGTGTCactctacacaacacacacaagctgtGGCCGCTGAAAGAAGGGGCACCACTGTGTAAGAGGGAGCTGAGCTTCAAAGTCCAGATTTTCGAAAAAAAAGTGGAGTCATACAAGAAAGTGACACGTAAACTCAGCAACGCAACGGAGTACATCAAGTATCAAGCTGGGCAGGCAGAGAAGCAGATCAAGATGGAGTTTGAGAGGCTCCACAAAGCTCTTGTCACAGAGGAAGCTCTGCGTCTAAAAGCCCTGGCTACTGAGGAGGAGCATAAGATTGCTTCCATACAGAAGATGATTGACAACACAAACGATGACATTGACGCTTTGAAGAAGCTCACTGATACGCTGAAGAAAGAGATGGGCAACGAGGATCTACCCCTCCTACGGAATTTCCAGAAGTTAAAAAGAGAAGCTCAGTGGACTCGTGAAGAACCTCGACTCCCTCACGACTCTCTTTTGAACATGGGCAAGCATGTTGGTGCTTTAAGCTTCAAAATCTGGAAGAACATGCAGGCCCATATCAAATATAATCCAGTGGTGTTGAACCCGAACACAGCCTCTCCATGGCTGTCTTTGAATGCTGACCTGTCCAGTGTGAAGGAAAGCTCAGAGCGGCTGACCACCCCAGACAACCCGGAGCGCTTTGATCCCTGTGTCTTTGTCCTGGGTGCTGAAGGTTACACATCTGGGAAACACAGGTGGGATGTCATTGTTGGTGACAACCCCAAGTGGATTGTGGGAGTGTGCAAAGAGTCTGTGCCCCGTAAAAAGAAGTTCACGGTCTCTACGAACCGTGGTGTGTGGTCCATAGGGCTGAGCAAAGGGGTGTATACCGTCTCAACACCTGAGcgtacagagctgcaggtgcaGCAGCGTCCCGAAAGGATCCGCGTTAAGCTGAATATAGATAAGGGAGAGGTGTCATTTTGGGATGGGGGAACAGCAAAGCACCTTGTCACGTTGACACACAAATTTGATGAAGAGATATATCCTATTTTTGGCCCTGGGCTCCATAGTACGCCAATGATTCTGGCTCCGGGAAAAATAGCTGTACACACCTCATGATAGGCTAGTACAGTGTATACTGCAGAGGGATTCTTGTTGACTAAAAGCTGTCTTTttcaataaaaccttttttaaaagcaagatAAATTTAACAACATGTAATTAGTCAAACAGGGATGAATTACAAATCAGTGtagcaaaacaaacatttaaatttgCCAATGGGAAGAGATAAGACAGAATGAATATTACAATTGGGGAAGACGATCAGATTATAGATGAATATCATGAAACATCATGGACATGAAATATACCAAAATTTGATTTACTAAAAGAATATAAGACACAGTACATAAACTAAACTTGTTAAGTTTCAAGAAAAGATTGAAATGATAAGGCTAACATTAAAGTTTGGCATAGGGACTTATGTCAGGAAAATTCTCATAACAGTATGTCAGAAATGTAGTTCATTAAAAGCCTTGCAGCTGCATGAAGCATAAGTTTGAGGGGAGTTGAGAAATGTCTTTCTGAATTGTGAGGGTGAACAGGAAATTGCAGAAACTgagatgtgaatgtgtgtaatgATGCCCAAATCATTAAGATGTGCCTTGGAGGAAACTGGATTGACTAGTCTTTTGTCATCACTTTACAATGGCGTGACAGAATAAAAAATGACACCAAAATAACTGGCAGCATGGCTGATGCTGGTGGTTAATACGGATGAAGTTTGAAAAGTGAATTAAACAGTTTGTTGATGTATTTTTGCGCTGGAGGAAATCTGCAACATCCAGCTCTTAATATCTGAGAGgtcaataaaaagaaaaaaaaggggaatgTGAGTGTAATTTAAGTTGCCTGCTTGCTTCACTAGCTTTTGTGGCTATTATGGCAGTAGTTctgtttattttcctttttgagGTATTTCAGTTCTATGAGGAATCGATTTGAATGATCTGCCTTTACGCTTGGGATATGTGCTTTAATTAattgttgtacttttttttataatttggtTGATTCTGCTCAAATATTGTAATCTAAAATGTTGACAATCTGTGTGGGTTTGTTGGCTTCAGGATAATTGTAGCCAATACTTTGAAGTATAtactactaccactactacaGCTCTGAATCTATATGCAAGTATCTGAATGTGCTGTTTCCATATGAACACTTgttatacaaataaaacaaaaattgaatacattaaaa

Function

NR:

description
PREDICTED: erythroid membrane-associated protein-like isoform X1

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805575.1 True 2875 mRNA 0.43 6 25075681 25081791

Neighbor

gene id symbol gene type direction distance location
LOC120562096 NA coding upstream 15703 25055944 ~ 25059978 (+)
cxcr3.2 LOC103363349,LOC108235357 coding upstream 18700 25050118 ~ 25056981 (+)
si:dkey-250k15.4 NA coding upstream 40861 25027440 ~ 25034820 (+)
LOC120561856 NA coding upstream 54267 25010894 ~ 25021414 (+)
LOC120561860 NA coding upstream 65207 25005775 ~ 25010474 (+)
megf8 megf8 coding downstream 751 25082542 ~ 25103609 (+)
LOC120561986 LOC103363344 coding downstream 23153 25104944 ~ 25111757 (+)
erfl1 LOC103363343,LOC103477917,LOC107083533,LOC106960039,LOC103139231 coding downstream 72499 25154290 ~ 25204206 (+)
arhgef1b arhgef1 coding downstream 126199 25207990 ~ 25258474 (+)
cd79a NA coding downstream 177000 25258791 ~ 25261903 (+)
G75804 NA non-coding upstream 138463 24874004 ~ 24937218 (+)
G75803 NA non-coding upstream 250916 24823026 ~ 24824765 (+)
G75798 NA non-coding upstream 270828 24800241 ~ 24804853 (+)
LOC120562289 NA non-coding upstream 586839 24468834 ~ 24488842 (+)
G75622 flot1,LOC108235422 non-coding upstream 778958 24295838 ~ 24296723 (+)
G75941 NA non-coding downstream 33765 25115556 ~ 25115757 (+)
G75942 NA non-coding downstream 62267 25144058 ~ 25144274 (+)
G75943 NA non-coding downstream 62788 25144579 ~ 25144804 (+)
LOC120561670 NA non-coding downstream 253225 25335016 ~ 25335958 (+)
G75977 NA non-coding downstream 264472 25346263 ~ 25347216 (+)
LOC120561858 NA other upstream 79372 24915254 ~ 24996309 (+)
grik5 grik5 other upstream 190308 24806289 ~ 24885373 (+)
dedd1 dedd2 other upstream 541405 24520735 ~ 24534276 (+)
G75644 NA other upstream 638862 24435139 ~ 24436819 (+)
lpcat3 lpcat3 other upstream 1001983 24056437 ~ 24073698 (+)
LOC120561674 LOC104943405,LOC103477911,LOC108235491,LOC108235490,LOC102233864,LOC107379681 other downstream 292416 25374207 ~ 25380798 (+)
apoc1 NA other downstream 409993 25491784 ~ 25493262 (+)
apoc2 NA other downstream 420809 25502600 ~ 25504052 (+)
taf12 taf12 other downstream 711027 25792818 ~ 25795519 (+)
G76192 NA other downstream 1058110 26139901 ~ 26142627 (+)

Expression


Co-expression Network