vars1 (vars,LOC102800022,LOC100693892,LOC102207686,LOC101472044,LOC102293562)


Basic Information

Item Value
gene id vars1
gene name vars,LOC102800022,LOC100693892,LOC102207686,LOC101472044,LOC102293562
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 24351568 ~ 24365583 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805662.1
CACGTTGCTAGCTCGTCGCATGGTTGCATCAGacggcggagagagagagagagagaggactcaTTTGGCTCTGCTGTGAATGCTAACTTAAGCTGACTTCTCTTTCTGTTTCGTTCAAAGAGATGGCCACTCTCTACGTGTCCCCTCACCCTGATGACTTCAGGAGCCTTCTGGCTCTCATAGCTGCAGAGTTTTGTACGTCCTCCTGCCTGCGGACCCTCACAGAGGACCCTCCTGCATCCCTGAATGCCCGCTCCAGACCGACCCTGCTGCTGGGCGCTGGGGAAGGTGACTCCGTCCTGAGCGGGGCCAGTGCTGTGGCCTGGTACCTGGCTAATCAGGGGAACAGGACTGGTATAGATACAAAGCAGCAGAGCCAGGTGTGGCAGTGGCTCAGCTTTGCAGACAATGAACTCACTCCAGTGTCCTGTGCTGTCGTCTTCCCACTGATGGGGGTGATGGGAGTGGATAATAAGCTCCAGCAGAGTTCCCGTGCGGAGTTGATACGCGTTCTGAAGGTTCTCGATCAGGCACTGGAACCAAGAACCTTCTTGGTGGGGGAGACCGTCACCCTGGCTGATATGGCTGTAGCTACTGCTGTTCTTCTCCCTTTCAAATATgtgTTGGAGCCATCAGACAGGAAAGTCTTGACCAATGTTACAAGGTGGTTCACGACTTGCACAAATCAGCCTCAGTTCCTGAAGGTGTTGGGGAAGATGACTCTTTGTGAAAAGATGGTGCCATTTACTCCGAAAACAAATGCTGCTGCAAATACTAAAGCTGATAATGCCAGTCCTGCTGTTGATTCTGCCGATGCCACAGCTAATGGTCCACCAAAGACAGAAGCCCAGCTGAAGAAGGAAGCTAAGAAGAGAGAAAAGCTGGAAAAGTTTCAGCAGAAGAAGGACATGGAGGCGAAGAAAAAGACTCAGCCACTGACCGAGAAAAAGGCCAAACCGGAAAAGAAGGAGTTGGGAGTTATCACATACAGTGTTCCCACTGCTCCTGGGGAGAAAAAAGATGTCATTAGCCCGCTTCCTGACTCTTATAGTCCTCAGTATGTGGAGGCTGCCTGGTATTCATGGTGGGAGAAACAGGGATTCTTCAAGCCTGAGTATGGGAGGAAGAGTATTAGTGACCAGAACCCTCGTGGCGTCTTCATGATGTGCATCCCTCCACCTAATGTGACTGGATCACTTCACCTGGGTCACGCCCTCACCAACGCCATTCAGGATTCTCTGACCAGATGGCACAGGATGCTAGGGGAGACCACCTTGTGGAACCCGGGCTGTGATCACGCTGGCATCGCCACCCAGGTGGTGGTGGAAAAAAAGCTGATGAGAGAGAGGGGTCTGAGCCGCCATGATCTGGGCAGGGAAAACTTCATCCAGGAAATTTGGAAATGGAAGAATGAGAAGGGAGACCGTATCTACCACCAGCTGAAGAAGCTGGGCTCCTCTCTGGACTGGGACAGAGCCTGCTTTACTATGGACCCTAAACTTTCCTATGCAGTCCAAGAGGCTTTTATCCGCATGCATGATGAGGGAGTGATCTACAGGAGCAAGCGGCTGGTCAACTGGTCCTGCACACTAAACTCTGCCATCTCTGACATAGAGGTGGATAAGAAGGAGCTCAGCGGCAGGACTCTGTTGCCTGTGCCTGGGTACAAAGAGAaagtggagtttggagtgttGGTGTCTTTCGCCTACAAGGTGGACGGATCAGACGAGGAAGTGATCGTGGCAACAACTCGTATTGAGACTATGTTGGGAGACTCTGCTGTAGCTGTCCACCCTGCTGACCCCAGATATCAGCATCTGAAGGGAAAAATGGTGCGGCACCCCTTCTGTGACCGCAAGATGCCGATTGTCTCAGATGAATTTGTGGATATGAGCTTTGGAACAGGTGCTGTCAAAATTACCCCAGCCCATGACCATAATGACTACGAGGTTGGAGAGAGACACAATCTGGCCTTCATCAACATCTTGGACGAGAATGGCCTCCTCATTAACGTGCCTCCTCCCTTCCTGGGCATGAAGCGTTTTGAGGCCAGGAAGGCCGTGCTGCAGGCTCTAAAGGACAGAGGCCACTTTAAAGAGATCAAAGACAACCCTATGGTTGTCCCAGTCTGCAGTCGTTCCAAAGACATTGTGGAGCCGCTGCTGAAGCCGCAGTGGTATGTGAACTGCACAGATATGGGCAAGCAGGCTGCAGACGCTGTCAGAGAGGGACGGCTCAAAATCATTCCTGATCACCACCTCAAGACGTGGTTCAACTGGATGGACAACATCAGGGACTGGTGTATCTCTCGGCAGCTGTGGTGGGGTCACCGTATTCCTGCTTACTTCATCACTGTCAACGATCCCTCCGTTAAACCAGGAGAGGACATGGACGGTCATTACTGGATGAGTGGGAGATCGGAGGAGGAGGCCAGAGAGAAGGCTGCAAAACGCTTCAATGTGTCTGCTGACAAAATTACCCTCAGACAAGATGACGATGTTCTGGACACTTGGTTCTCGTCTGGCATTTTCCCCTTCTCCATCTTTGGATGGCCTAATGAGACCCAGGACCTGAATGTGTTCTACCCTGGCACCTTGCTGGAGACGGGCCATGACATCCTGTTCTTCTGGGTTGCTCGAATGGTTATGATGGGCCTCAAATTGACAGGCAAGCTGCCCTTCAAAGAGGTTTATCTGCATGCAGTGGTGAGGGATGCTCACGGAAGGAAGATGAGCAAATCTTTGGGCAACGTCATTGACCCTCTGGATGTCATTACAGGGATCTCCCTGGAGGGTCTTCATGCCCTTTTGATGGACAGCAACTTGGATCCAGTGGAGGTGGAGAAGGCAAAGCAGGGCCAGGCATCAGACTACCCAAATGGCATCCCAGAGTGCGGCACAGATGCTCTCCGGTTCGCCCTGTGTGCCTACACTGGCCAAGGTAGGGATATCAACCTGGATGTCAACCGCATCCTCGGTTACCGTCACTTCTGCAACAAACTGTGGAACGCTGTGAAGTTTGCCATGAAGACGCTGGGAGACAACTTTGTACCATCAGAGAAAGCCCAGTTGTGTGGGGAGGAGAGCGTATCAGACAGGTGGATTCTGTCTCGACTGAGTGCTGCTGTTGGTCTCTGTGATGCTGGCTTCAAGGCCTATGACTTCCCAACCATCACGACCGCCATCTACAACTTCTGGCTGTACGAGCTCTGTGACGTCTACCTGGAAAGTGTGAAACCAGTGTTCAGTAAAGCAGAGGAAGACAGCGCCAGCCAGAGACAGGCCCTGGTGTGCAGACAAACCCTTTACACCTGTTTAGATGTCGGTCTGCGCCTTCTTTCTCCTATTATGCCCTTCGTCAGTGAGGAGCTCTACCAGAGGTTACCACGACGACGACCTCAGAGTGATCCCCCCAGCATTAGTGTCACACCCTACCCTAATACAGAGGAGTTCTGCTGGCACAGTGAGGAGGTCGACCGTGACATGGAGTTCGTAATGACTGTGATCAAGACGATCCGGTCACTGAGGGCCGACTACAACCTgaccaagaccagagctgactGCTACCTCCAGTGCATAGACTCTGCGACCGTGTCCCTGGTGCAGAAGTACAGTCTGCAGATTCAGACCTTGTCTTATTCTCAGGCCGTCATTGCTGTGACCGGCAACCAGCCTGTCCCAGGAGGCTGTGCTGTGGCCATCGCCTCTGACAGGTGTACTGTCAACCTTATGCTCAAGGGTCTCATCGATGTGGAGAAGGAAGTGACTAAGCTGATGACAAAGAAAGGTGACTTGGAAAAACAGATGGAGAAGATGAGAGAGAAAATGGCAAAGAGCGACTACAAGGAGAAGGTGCCAGTGAAGGTGCAAGAGCAGGATGCTGATAAGCTACGGCAGAGTCAAACTGAACttgaaaaagtgaaagaagCCATGGACAACTTCAGGAAAATGATGTGACTTGCCCTTAGCATTATGTAAATCAGGAGTTATTTCCACATTTTTGTCAATGTaatcattttaatattcattttcCAAATTGATTGTAGTACAAAGGGAATTCAATAAAGCTCTTATGACAGACAA
>XM_039805663.1
AGGCCAAACCGGAAAAGAAGGAGTTGGGAGTTATCACATACAGTGTTCCCACTGCTCCTGGGGAGAAAAAAAGATGTCATTAGCCCGCTTCCTGACTCTTATAGTCCTCAGTATGTGGAGGCTGCCTGGTATTCATGGTGGGAGAAACAGGGATTCTTCAAGCCTGAGTATGGGAGGAAGAGTATTAGTGACCAGAACCCTCGTGGCGTCTTCATGATGTGCATCCCTCCACCTAATGTGACTGGATCACTTCACCTGGGTCACGCCCTCACCAACGCCATTCAGGATTCTCTGACCAGATGGCACAGGATGCTAGGGGAGACCACCTTGTGGAACCCGGGCTGTGATCACGCTGGCATCGCCACCCAGGTGGTGGTGGAAAAAAAGCTGATGAGAGAGAGGGGTCTGAGCCGCCATGATCTGGGCAGGGAAAACTTCATCCAGGAAATTTGGAAATGGAAGAATGAGAAGGGAGACCGTATCTACCACCAGCTGAAGAAGCTGGGCTCCTCTCTGGACTGGGACAGAGCCTGCTTTACTATGGACCCTAAACTTTCCTATGCAGTCCAAGAGGCTTTTATCCGCATGCATGATGAGGGAGTGATCTACAGGAGCAAGCGGCTGGTCAACTGGTCCTGCACACTAAACTCTGCCATCTCTGACATAGAGGTGGATAAGAAGGAGCTCAGCGGCAGGACTCTGTTGCCTGTGCCTGGGTACAAAGAGAaagtggagtttggagtgttGGTGTCTTTCGCCTACAAGGTGGACGGATCAGACGAGGAAGTGATCGTGGCAACAACTCGTATTGAGACTATGTTGGGAGACTCTGCTGTAGCTGTCCACCCTGCTGACCCCAGATATCAGCATCTGAAGGGAAAAATGGTGCGGCACCCCTTCTGTGACCGCAAGATGCCGATTGTCTCAGATGAATTTGTGGATATGAGCTTTGGAACAGGTGCTGTCAAAATTACCCCAGCCCATGACCATAATGACTACGAGGTTGGAGAGAGACACAATCTGGCCTTCATCAACATCTTGGACGAGAATGGCCTCCTCATTAACGTGCCTCCTCCCTTCCTGGGCATGAAGCGTTTTGAGGCCAGGAAGGCCGTGCTGCAGGCTCTAAAGGACAGAGGCCACTTTAAAGAGATCAAAGACAACCCTATGGTTGTCCCAGTCTGCAGTCGTTCCAAAGACATTGTGGAGCCGCTGCTGAAGCCGCAGTGGTATGTGAACTGCACAGATATGGGCAAGCAGGCTGCAGACGCTGTCAGAGAGGGACGGCTCAAAATCATTCCTGATCACCACCTCAAGACGTGGTTCAACTGGATGGACAACATCAGGGACTGGTGTATCTCTCGGCAGCTGTGGTGGGGTCACCGTATTCCTGCTTACTTCATCACTGTCAACGATCCCTCCGTTAAACCAGGAGAGGACATGGACGGTCATTACTGGATGAGTGGGAGATCGGAGGAGGAGGCCAGAGAGAAGGCTGCAAAACGCTTCAATGTGTCTGCTGACAAAATTACCCTCAGACAAGATGACGATGTTCTGGACACTTGGTTCTCGTCTGGCATTTTCCCCTTCTCCATCTTTGGATGGCCTAATGAGACCCAGGACCTGAATGTGTTCTACCCTGGCACCTTGCTGGAGACGGGCCATGACATCCTGTTCTTCTGGGTTGCTCGAATGGTTATGATGGGCCTCAAATTGACAGGCAAGCTGCCCTTCAAAGAGGTTTATCTGCATGCAGTGGTGAGGGATGCTCACGGAAGGAAGATGAGCAAATCTTTGGGCAACGTCATTGACCCTCTGGATGTCATTACAGGGATCTCCCTGGAGGGTCTTCATGCCCTTTTGATGGACAGCAACTTGGATCCAGTGGAGGTGGAGAAGGCAAAGCAGGGCCAGGCATCAGACTACCCAAATGGCATCCCAGAGTGCGGCACAGATGCTCTCCGGTTCGCCCTGTGTGCCTACACTGGCCAAGGTAGGGATATCAACCTGGATGTCAACCGCATCCTCGGTTACCGTCACTTCTGCAACAAACTGTGGAACGCTGTGAAGTTTGCCATGAAGACGCTGGGAGACAACTTTGTACCATCAGAGAAAGCCCAGTTGTGTGGGGAGGAGAGCGTATCAGACAGGTGGATTCTGTCTCGACTGAGTGCTGCTGTTGGTCTCTGTGATGCTGGCTTCAAGGCCTATGACTTCCCAACCATCACGACCGCCATCTACAACTTCTGGCTGTACGAGCTCTGTGACGTCTACCTGGAAAGTGTGAAACCAGTGTTCAGTAAAGCAGAGGAAGACAGCGCCAGCCAGAGACAGGCCCTGGTGTGCAGACAAACCCTTTACACCTGTTTAGATGTCGGTCTGCGCCTTCTTTCTCCTATTATGCCCTTCGTCAGTGAGGAGCTCTACCAGAGGTTACCACGACGACGACCTCAGAGTGATCCCCCCAGCATTAGTGTCACACCCTACCCTAATACAGAGGAGTTCTGCTGGCACAGTGAGGAGGTCGACCGTGACATGGAGTTCGTAATGACTGTGATCAAGACGATCCGGTCACTGAGGGCCGACTACAACCTgaccaagaccagagctgactGCTACCTCCAGTGCATAGACTCTGCGACCGTGTCCCTGGTGCAGAAGTACAGTCTGCAGATTCAGACCTTGTCTTATTCTCAGGCCGTCATTGCTGTGACCGGCAACCAGCCTGTCCCAGGAGGCTGTGCTGTGGCCATCGCCTCTGACAGGTGTACTGTCAACCTTATGCTCAAGGGTCTCATCGATGTGGAGAAGGAAGTGACTAAGCTGATGACAAAGAAAGGTGACTTGGAAAAACAGATGGAGAAGATGAGAGAGAAAATGGCAAAGAGCGACTACAAGGAGAAGGTGCCAGTGAAGGTGCAAGAGCAGGATGCTGATAAGCTACGGCAGAGTCAAACTGAACttgaaaaagtgaaagaagCCATGGACAACTTCAGGAAAATGATGTGACTTGCCCTTAGCATTATGTAAATCAGGAGTTATTTCCACATTTTTGTCAATGTaatcattttaatattcattttcCAAATTGATTGTAGTACAAAGGGAATTCAATAAAGCTCTTATGACAGACAA

Function

symbol description
vars Predicted to enable valine-tRNA ligase activity. Predicted to be involved in valyl-tRNA aminoacylation. Predicted to act upstream of or within translation. Located in mitochondrion. Is expressed in several structures, including alimentary system; cranium; genitourinary system; midbrain; and telencephalon. Orthologous to human VARS1 (valyl-tRNA synthetase 1).

NR:

description
LOW QUALITY PROTEIN: valine--tRNA ligase-like

GO: NA

KEGG:

id description
K01873 VARS, valS; valyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805662.1 True 4082 mRNA 0.51 29 24351568 24365583
XM_039805663.1 False 3135 mRNA 0.51 24 24354816 24365583

Neighbor

gene id symbol gene type direction distance location
ino80e ino80e,LOC102775861 coding upstream 5624 24342037 ~ 24345944 (+)
si:dkeyp-77h1.4 NA coding upstream 15867 24321302 ~ 24335701 (+)
mdc1 LOC104943792 coding upstream 31152 24309049 ~ 24320416 (+)
tubb5 tubb,tubb5,LOC102780606,LOC108432309 coding upstream 43988 24302838 ~ 24307580 (+)
ddr1 ddr1 coding upstream 59082 24253203 ~ 24292486 (+)
si:ch73-22o12.1 nectin2,LOC103370823 coding downstream 22332 24387915 ~ 24466018 (+)
atp1a3b atp1a3,LOC102798469,LOC100712391 coding downstream 127332 24492915 ~ 24514355 (+)
pou2f2a pou2f2 coding downstream 194482 24560065 ~ 24598707 (+)
erfl3 erf,LOC103362700 coding downstream 256117 24621700 ~ 24677297 (+)
cicb cic,LOC102793300 coding downstream 323717 24689300 ~ 24729988 (+)
G75622 flot1,LOC108235422 non-coding upstream 54845 24295838 ~ 24296723 (+)
G75611 NA non-coding upstream 134999 24216140 ~ 24216569 (+)
G75583 NA non-coding upstream 226487 24122027 ~ 24125081 (+)
G75582 gnb3,LOC103375278 non-coding upstream 229559 24119317 ~ 24122009 (+)
G75523 tpi1,tpi,LOC102304959 non-coding upstream 298612 24048925 ~ 24052956 (+)
LOC120562289 NA non-coding downstream 103251 24468834 ~ 24488842 (+)
G75798 NA non-coding downstream 434658 24800241 ~ 24804853 (+)
G75803 NA non-coding downstream 457443 24823026 ~ 24824765 (+)
G75804 NA non-coding downstream 508421 24874004 ~ 24937218 (+)
G75941 NA non-coding downstream 749973 25115556 ~ 25115757 (+)
lpcat3 lpcat3 other upstream 277870 24056437 ~ 24073698 (+)
atn1 atn1 other upstream 312141 24026915 ~ 24039427 (+)
LOC120563047 vamp1,LOC104928996 other upstream 472153 23873909 ~ 23879415 (+)
LOC120563204 NA other upstream 538160 23768233 ~ 23813408 (+)
casp2 casp2,LOC102795506,LOC103369458 other upstream 700072 23641555 ~ 23651496 (+)
G75644 NA other downstream 69556 24435139 ~ 24436819 (+)
dedd1 dedd2 other downstream 155152 24520735 ~ 24534276 (+)
grik5 grik5 other downstream 440706 24806289 ~ 24885373 (+)
LOC120561858 NA other downstream 549671 24915254 ~ 24996309 (+)
LOC120561674 LOC104943405,LOC103477911,LOC108235491,LOC108235490,LOC102233864,LOC107379681 other downstream 1008624 25374207 ~ 25380798 (+)

Expression


Co-expression Network