LOC120562142


Basic Information

Item Value
gene id LOC120562142
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21000271 ~ 21001642 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805669.1
AATTGACTTTCAGTCCGTCAGTTGAGTTCAGCTCACAGCAACAATGGACCTTTTGGGAAACTGGAACAGCATTTTTCCCCAAATGACATGGAGACAGATTGATCAGAGTGTGTCCACAGCAGAGTTTGGAGACTTGATTGAGTTTGCACATCCATGGTCAGGATTGTCTCTTTGGGGTGTTTATGTTGGAGAAGGCCATGTTATCCATTTTGGAGTGGGAGATGAGAACATGACACAGAGAGCCTGCCGCAGCCTCCTTCAACAAATTGTTCCAAAGTCAAATGGTGATCGTGTACTGAGAAAGACCAGAATCTGCACACAGCGCATTACGGAGATCAAAGTGTCTCCAGGAACTCGCATCAGGGTCAACAACAACAAGCACAACCTGGTTCCATCTCCACAGGAGAGGATGATTAATTGCTGTGAGACTTTTCTGCACCAGGAGTTCAAATATGACCTGATGAACTTCAACAGTGAGCATTTTGCCACATTTGTTCGATACGGCAACGCTGCGTGCAACCAGaTTCCCTTTAAGGAAAAGAATGGCACGCATGTTGATACAACTCAAACTCTGCAAATGATAATGCAGCAACGGGTGGAGACAGAAATTTAAGATCTTCTGCTGCGCCTCTCATGTATATCTGTCACACTGACTTTGTTAATGAGCAAAAATAAAACTCCTTTGCTGCTA

Function

GO: NA

KEGG:

id description
ko00120 Primary bile acid biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805669.1 True 691 mRNA 0.44 4 21000271 21001642

Neighbor

gene id symbol gene type direction distance location
galnt1 galnt1 coding upstream 39614 20903853 ~ 20960657 (+)
LOC120561989 atp4a coding upstream 358420 20631458 ~ 20641851 (+)
si:dkey-12j5.1 LOC103353891,LOC103388393,LOC103478624,LOC102212439,LOC102778746 coding upstream 524717 20448227 ~ 20475554 (+)
LOC120562868 LOC100690947,LOC102779295,LOC104968267,LOC102211038,LOC101468916 coding upstream 620188 20368104 ~ 20380083 (+)
LOC120562869 LOC104968268,LOC100690679,LOC103353894 coding upstream 642074 20352377 ~ 20358197 (+)
nr4a3 nr4a3 coding downstream 79244 21080886 ~ 21103601 (+)
stx17 stx17,LOC102795111 coding downstream 105196 21106838 ~ 21117093 (+)
invs LOC102794544 coding downstream 127708 21129350 ~ 21151513 (+)
si:ch211-197h24.6 NA coding downstream 160028 21161670 ~ 21167686 (+)
tmem67 tmem67 coding downstream 170881 21172523 ~ 21183348 (+)
G74207 NA non-coding upstream 106329 20893139 ~ 20893942 (+)
G74208 NA non-coding upstream 107616 20891684 ~ 20892655 (+)
G74205 NA non-coding upstream 158502 20840560 ~ 20841769 (+)
G74204 scrt1,LOC108241025,LOC103140879,LOC105929800,LOC103353874,LOC102233766 non-coding upstream 163523 20832323 ~ 20836748 (+)
G74145 nacad,LOC104951159 non-coding upstream 385564 20607340 ~ 20614707 (+)
G74230 rad54b non-coding downstream 74669 21076311 ~ 21222895 (+)
G74234 NA non-coding downstream 99528 21101170 ~ 21156912 (+)
G74233 NA non-coding downstream 148747 21150389 ~ 21152512 (+)
G74274 kiaa1429,LOC104941925 non-coding downstream 241587 21243229 ~ 21243567 (+)
G74286 NA non-coding downstream 287529 21289171 ~ 21289375 (+)
glipr2l glipr2 other upstream 395106 20600323 ~ 20605165 (+)
gra NA other upstream 674310 20322330 ~ 20325961 (+)
si:ch211-257p13.3 kifc3,LOC102783047 other upstream 773280 20214588 ~ 20226991 (+)
LOC120561838 tppp other upstream 790944 20192690 ~ 20209327 (+)
G73779 hdac9 other upstream 1350760 19646975 ~ 19649511 (+)
sec61b sec61b,LOC102796100 other downstream 6371 21008013 ~ 21011414 (+)
LOC120563169 NA other downstream 329770 21331412 ~ 21336665 (+)
crot acbd7,crot,LOC102783617,LOC101470173 other downstream 401393 21403035 ~ 21415894 (+)
them4 LOC106592246,LOC104959154,LOC101466288,LOC107096308,LOC100702377,LOC105029233,LOC106575342 other downstream 597392 21599034 ~ 21603458 (+)
G74633 tuft1,LOC102781808 other downstream 767906 21769548 ~ 21770286 (+)

Expression


Co-expression Network