ino80e (ino80e,LOC102775861)


Basic Information

Item Value
gene id ino80e
gene name ino80e,LOC102775861
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 24342037 ~ 24345944 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805685.1
CTAAAGCCAAGCTAAGCGCCGTTAAAacccaaaagaagaagaaaaaaggtccCGCCCATCAAGACGCAAGAAAACGACGTCACGAAAGTAAACAACAGCATGTCGCACAGACAGACTCAATCAAGAGAAATGAACGGTCGAGCGGACGTCGAAGTTGACTACAAGCGGAAATACAAAAATCTCAAACGAAAATTAAAATTTCTTGTTTATGAACAGGAATGCTTTCAGGAGGAGCTGAGGAGAGCACAGAGAaaacttctcaaagtttccagGGACAAAAGCTTCCTTCTGGACAGACTGCTGCAGTATGAGAGGGTAGATGAAGACTCCTCAGATTCAGATGCAACAGTTTcttcagaaaatagtgaaggAGAAGGCCCcagggagagggaaagagaacgAGATGGAGCAAAGAAGCGAAGAAGTAGTCCTGGGGCGTGTCTTCCTTCATCATCCTCCCCTCATCTCTCCCTGCTGTCCCGTCCTGGTGTAAATGCCCTACAGCCATCAGGCTCTGGACCCTACCTGAACACCATGCCCTTCCCACCAGAGTATTTGGCTCCCCCAGCTGAAcgaatgaagaaagagagaaaaacaaagacgCCTAAAAACAAGAGAGAGACTACGGGGAAGGTTGTTGCCCCAATGGCAGCTAATTACCCATCAGCCCCTGCGGCCCCTCCAGCAGCCAGTGGCCCCTTCAGCTGGGTTCCCAGACAGATGCTTAGCGGAGATGcagctgaggaggagggagagagcgaTGGTGACAGCGACAGAGGAGATGAagacagaggggagggagaTGAGGCTGAACTGGTCATTGACATACCTAATGAGTGAGCCGGAATGTGTGTTTTAGATGTATTTATAAGCaagggattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaactgtgCGTTCCTTATCTGTAGCCCATTACACAGTGTCAATTAATTGGAGTGCCAAGCTCCCCCCTGTGGACTTTTGCTTAATTGCAGTATCACTGTCAAAACTATCTCTCAGATAAATGTGGTTTTCCAATATTATGCTAAAAATAAATCTGTTATAAAATTACAGTTTGTAAACCTGTTTTGACCTGCCTGCTAATTATTTTTAGTCTTACAGTCTAGCAATCGACAAACTGTGACTACAACTCGGTATGTCCTGCACAAAGAGAGCTTTTGTCTGTTATTTGTTTACTGCAGTCCATTAAAGCTGTTTAAGTACGATATA
>XM_039805686.1
AGTTTATcgaatgcatgtttttttttttatatatatatttgaaatacattttggtgCATATTTTCAAAGGCCTGTGAGACCAGCAGCTTTGTATCTTTAGCGAGCTAGCTATAAATGAACGGTCGAGCGGACGTCGAAGTTGACTACAAGCGGAAATACAAAAATCTCAAACGAAAATTAAAATTTCTTGTTTATGAACAGGAATGCTTTCAGGAGGAGCTGAGGAGAGCACAGAGAaaacttctcaaagtttccagGGACAAAAGCTTCCTTCTGGACAGACTGCTGCAGTATGAGAGGGTAGATGAAGACTCCTCAGATTCAGATGCAACAGTTTcttcagaaaatagtgaaggAGAAGGCCCcagggagagggaaagagaacgAGATGGAGCAAAGAAGCGAAGAAGTAGTCCTGGGGCGTGTCTTCCTTCATCATCCTCCCCTCATCTCTCCCTGCTGTCCCGTCCTGGTGTAAATGCCCTACAGCCATCAGGCTCTGGACCCTACCTGAACACCATGCCCTTCCCACCAGAGTATTTGGCTCCCCCAGCTGAAcgaatgaagaaagagagaaaaacaaagacgCCTAAAAACAAGAGAGAGACTACGGGGAAGGTTGTTGCCCCAATGGCAGCTAATTACCCATCAGCCCCTGCGGCCCCTCCAGCAGCCAGTGGCCCCTTCAGCTGGGTTCCCAGACAGATGCTTAGCGGAGATGcagctgaggaggagggagagagcgaTGGTGACAGCGACAGAGGAGATGAagacagaggggagggagaTGAGGCTGAACTGGTCATTGACATACCTAATGAGTGAGCCGGAATGTGTGTTTTAGATGTATTTATAAGCaagggattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaactgtgCGTTCCTTATCTGTAGCCCATTACACAGTGTCAATTAATTGGAGTGCCAAGCTCCCCCCTGTGGACTTTTGCTTAATTGCAGTATCACTGTCAAAACTATCTCTCAGATAAATGTGGTTTTCCAATATTATGCTAAAAATAAATCTGTTATAAAATTACAGTTTGTAAACCTGTTTTGACCTGCCTGCTAATTATTTTTAGTCTTACAGTCTAGCAATCGACAAACTGTGACTACAACTCGGTATGTCCTGCACAAAGAGAGCTTTTGTCTGTTATTTGTTTACTGCAGTCCATTAAAGCTGTTTAAGTACGATATA
>XM_039805687.1
CTAAAGCCAAGCTAAGCGCCGTTAAAacccaaaagaagaagaaaaaaggtccCGCCCATCAAGACGCAAGAAAACGACGTCACGAAAGTAAACAACAGCATGTCGCACAGACAGACTCAATCAAGAGAAATGAACGGTCGAGCGGACGTCGAAGTTGACTACAAGCGGAAATACAAAAATCTCAAACGAAAATTAAAATTTCTTGTTTATGAACAGGAATGCTTTCAGGAGGAGCTGAGGAGAGCACAGAGAaaacttctcaaagtttccagGGACAAAAGCTTCCTTCTGGACAGACTGCTGCAGTATGAGAGGGTAGATGAAGACTCCTCAGATTCAGATGCAACAGTTTcttcagaaaatagtgaaggAGAAGGCCCcagggagagggaaagagaacgAGATGGAGCAAAGAAGCGAAGAAGTAGTCCTGGGGCGTGTCTTCCTTCATCATCCTCCCCTCATCTCTCCCTGCTGTCCCGTCCTGGTGTAAATGCCCTACAGCCATCAGGCTCTGGACCCTACCTGAACACCGTTGTTGCCCCAATGGCAGCTAATTACCCATCAGCCCCTGCGGCCCCTCCAGCAGCCAGTGGCCCCTTCAGCTGGGTTCCCAGACAGATGCTTAGCGGAGATGcagctgaggaggagggagagagcgaTGGTGACAGCGACAGAGGAGATGAagacagaggggagggagaTGAGGCTGAACTGGTCATTGACATACCTAATGAGTGAGCCGGAATGTGTGTTTTAGATGTATTTATAAGCaagggattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaactgtgCGTTCCTTATCTGTAGCCCATTACACAGTGTCAATTAATTGGAGTGCCAAGCTCCCCCCTGTGGACTTTTGCTTAATTGCAGTATCACTGTCAAAACTATCTCTCAGATAAATGTGGTTTTCCAATATTATGCTAAAAATAAATCTGTTATAAAATTACAGTTTGTAAACCTGTTTTGACCTGCCTGCTAATTATTTTTAGTCTTACAGTCTAGCAATCGACAAACTGTGACTACAACTCGGTATGTCCTGCACAAAGAGAGCTTTTGTCTGTTATTTGTTTACTGCAGTCCATTAAAGCTGTTTAAGTACGATATAGATGTTTCAAATGTCATGTCTTTATTGCTTTTTACAGGAAGTTTTTTAATTTGTACTTCTATGTTAAtgttttttcaaacaaattgtcaaaaatcAAAGCTACTTCATGTTAAATGAGATTTATTATTACTGCACCTATCAAATTGTGTGTCAgagaataaaatataaaatgttatcattTCAGATGACTTTAGAGAATAAAAGTTTGTGTTTGACGTTAAA

Function

symbol description
ino80e Acts upstream of or within brain development. Predicted to be located in nucleus. Predicted to be part of Ino80 complex. Is expressed in brain. Orthologous to human INO80E (INO80 complex subunit E).

NR:

description
PREDICTED: INO80 complex subunit E isoform X2

GO:

id name namespace
GO:0007420 brain development biological_process
GO:0006260 DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0031011 Ino80 complex cellular_component

KEGG:

id description
K11669 INO80E; INO80 complex subunit E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805685.1 False 1392 mRNA 0.46 8 24342037 24345722
XM_039805686.1 False 1377 mRNA 0.45 8 24342204 24345722
XM_039805687.1 True 1515 mRNA 0.43 7 24342037 24345944

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-77h1.4 NA coding upstream 6336 24321302 ~ 24335701 (+)
mdc1 LOC104943792 coding upstream 21621 24309049 ~ 24320416 (+)
tubb5 tubb,tubb5,LOC102780606,LOC108432309 coding upstream 34457 24302838 ~ 24307580 (+)
ddr1 ddr1 coding upstream 49551 24253203 ~ 24292486 (+)
gnl1 gnl1,LOC102778060 coding upstream 98483 24234148 ~ 24243554 (+)
vars1 vars,LOC102800022,LOC100693892,LOC102207686,LOC101472044,LOC102293562 coding downstream 5624 24351568 ~ 24365583 (+)
si:ch73-22o12.1 nectin2,LOC103370823 coding downstream 41971 24387915 ~ 24466018 (+)
atp1a3b atp1a3,LOC102798469,LOC100712391 coding downstream 146971 24492915 ~ 24514355 (+)
pou2f2a pou2f2 coding downstream 214121 24560065 ~ 24598707 (+)
erfl3 erf,LOC103362700 coding downstream 275756 24621700 ~ 24677297 (+)
G75622 flot1,LOC108235422 non-coding upstream 45314 24295838 ~ 24296723 (+)
G75611 NA non-coding upstream 125468 24216140 ~ 24216569 (+)
G75583 NA non-coding upstream 216956 24122027 ~ 24125081 (+)
G75582 gnb3,LOC103375278 non-coding upstream 220028 24119317 ~ 24122009 (+)
G75523 tpi1,tpi,LOC102304959 non-coding upstream 289081 24048925 ~ 24052956 (+)
LOC120562289 NA non-coding downstream 122890 24468834 ~ 24488842 (+)
G75798 NA non-coding downstream 454297 24800241 ~ 24804853 (+)
G75803 NA non-coding downstream 477082 24823026 ~ 24824765 (+)
G75804 NA non-coding downstream 528060 24874004 ~ 24937218 (+)
G75941 NA non-coding downstream 769612 25115556 ~ 25115757 (+)
lpcat3 lpcat3 other upstream 268339 24056437 ~ 24073698 (+)
atn1 atn1 other upstream 302610 24026915 ~ 24039427 (+)
LOC120563047 vamp1,LOC104928996 other upstream 462622 23873909 ~ 23879415 (+)
LOC120563204 NA other upstream 528629 23768233 ~ 23813408 (+)
casp2 casp2,LOC102795506,LOC103369458 other upstream 690541 23641555 ~ 23651496 (+)
G75644 NA other downstream 89195 24435139 ~ 24436819 (+)
dedd1 dedd2 other downstream 174791 24520735 ~ 24534276 (+)
grik5 grik5 other downstream 460345 24806289 ~ 24885373 (+)
LOC120561858 NA other downstream 569310 24915254 ~ 24996309 (+)
LOC120561674 LOC104943405,LOC103477911,LOC108235491,LOC108235490,LOC102233864,LOC107379681 other downstream 1028263 25374207 ~ 25380798 (+)

Expression


Co-expression Network