ntrk1


Basic Information

Item Value
gene id ntrk1
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 29780179 ~ 29811789 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805688.1
aggctgCAGCCCACTACCACCATGTCCCTAGAGGCCccttgcctgcctgcctgcctgcctgctcctcctgctgctcagtACAGCTGTGGCTCAGCACCAGACCCTGACCAGCTGGGATCTCAACCCTGTCAGAGAGCCACGACAACAGCCACTGTGGGCGTGTTCACACTGTGTGTGAAAGCTCCTCATCGCTGACTATTAGGTGAAGCACACAGACACCAACTTTAACTACAGCttccaacaacaacagcaacatctcTGCTGGTGCTGAGAATATTCTCTTTTGAGCATGGCTGTGGCACCCCGGGCCCTGGCACTTCCTCTGCCCCTGGTGCTCGCCCTGCTCACCCTGGCACCGGCGCCCACCTTGGGAGGCTGCCCAGCGGCTTGCCGGTGCTCCTTCGCCATGCTGCAGTGCCTGGAGCCCAATGGTATCACCAGCATCCCGGCACTGGCACCGCAAGAGAGCGAGAATGTGACGGAGATTTACATCGAAAACCAAGCAACCCTGGAGAATATAACAGAAATTGATCTTGTTAACTACAGAGAGCTGAAAAACCTcACGGTCACATCATGTAAACTGAGGCTCATCTCTGCCAATGCCTTCCAACACAACCTCAAGCTCCAGTATGTGAACCTGGCATCAAACTATCTGGAACACATCTCCTGGAGGGTGTTTCATTTTCTCCCACTGCTCAACCTAGTTTTGAGGGACAACCCTCTTGTTTGCTCCTGtgacctccactggctccaGCAGTGGCAGCGGAATGAACGCGGTGACCTGGAAAACCAAATGTTGTCTTGTTTCTCCCATGATCGAGAAGAACCCCTCAACTCTTTGGTGATACATAACTGCAGTCTGCCTGATGTGACGATCGTCTCTTTCAAAGATTCAAAGATTCAAGAAGGGGGAAACCTGACATTTGCGTGTCAAGTGACAGGAAGTCCTACTCCCAATGTGAGATGGCGAACTGATGAGCTTCACTCTCGCTTCTTTACCCAGGAGAGAATCTGGGGCTCCACATTAGAGCTGGTCCTTTTCCTCACCAACGTTTCTTCCAGTGACAACCTGCACAACCTAACTTGTGAGGCCGAGAACCAAGCTGGGCTGGGAGAGGAGATGGTGCAATTGGACATAGAGTTTCCAGTCAAAATCATCTTTCTTAGGGATGCCGTGCCGCAGCACCACTGGTGTTTCCCCTTTGCTGTGGATGGAAATCCTGAACCATCCATCACCTGGCAGTTCAACGGCAACAAACTCAAAGAGGGCATGTACACATACACCCAGCTCATCCCTGACTCGGGTGACGGGTCAGTGAAACACGGATGTCTCTTCCTCAACAAGCCCACACACCTCAACAACGGCTTCTACACTCTGATTGTGCAGAACAAACTGGGAAGGGATGAGGCCACAGCCTCTGGGATTTTTATGCACAACCCCTTCGACCCGCTCGATCCTGAGGGGATAATTCCAGtccttgatgatgatgatccaATTCCTACAGACAAATCAGACATGGACGTCACAGAGAACCCTGAGAGTCGAGTGTTTGTGGTGTCTGTGGCTGTGGGTCTTGCTGTGTTTGCCTGCACTTTCCTTCTCATCATGATTTTGGTTATTAACAAGTGTGGCCAGCATTCCAAGTTTGGTATTCACCGTTCATCAGTTTTGGGCACTGAGGATGACCTGGCTGTGTCACTTCGTTTCATGAACTTTGGAACGAGCCCACCTTCCTCAGATGAAGACTCTGGTTTATCCAGTTTTGTAGAGAATCCACAATACTTCTGCGGCATCATCAAAGAGAAAGACATGTGTGTCCAGCATATTAAACGGCAGGACATTGTGTTGAAGTGGGAGCTGGGTGAAGGAGCGTTTGGCAAAGTCTACCTGGCAGAGTGTGCCAACCTCAGCCCCGACAGCAACAAGATGCTGGTCGCCATCAAGACTCTAAAGGACGCCAACGAGTCGACCCGGCAGGACTTCCAGAGGGAGGCCGAGCTGCTGACGGTGCTCCAACACCAGCACATTGTGCGATTCTACGGCGTCTGTACAGACGGAGAGCCGCTGGCCATGGTGTTCGAATACATGAGGCACGGAGACCTCAACCGATTTCTTAGAGCTCATGGCCCTGATGCTCGTATCCTGGAGGAGTCGAAGATGCCCCCGCTGGGTCAGCTCACTCTGCCTCAGATGCTCCACATCGCCGCCCAGATCGCCTCAGGTATGGTCTACCTGGCGTCGCTGCACTTCGTCCACCGTGACCTGGCAACCCGCAACTGTCTGGTGGGGGAGGGCCTGGTGGTCAAAATCGGAGACTTTGGCATGTCCCGAGACATCTACAGCACAGATTATTATCGGGTGGGCGGACGTACGATGCTGCCGATCCGCTGGATGCCCCCGGAGAGCATCATGTACAGGAAGTTCACCACGGAGAGCGACATCTGGAGCTTCGGTGTTGTCCTCTGGGAGATCTTCACCTACGGCAAACAGCCCTGGTACCAGCTGTCCAACAGTGAGGCCATCGAATGCATCACGCAGGGACGGGAACTGGAAAGGCCACGCACCTGCCCCAAGGAGGTGTACCTGCTGATGCAGGGCTGCTGGCAGAGAGAGCCCCAGCAGAGGATGGTCATCAAGGACATCCACAGCCGTCTGCTGGCCCTGGTCAAGAACCCGCCGGTTTACCTGGATATCCTGGGCTAAAAGGGGCCGAGAAGCAACCAGGGAGCGGAATTGAAAAGGCTGGGGAGGTGGTTGAGGTTTTGATTTGAGACCTAAAACTTGTTCCTTTAATTCTAATCGAGGGTAATTACTTTGAACAGGCTCCTCTTGGTTTGAGTTTAAAAATATGTCCCGATGCTTGATGGACGAACCATCTGCAGTGACCTTTCCTCATCCCGGCTCGACCCCGACCTGTTTACTGCCCCGTCGTTCTCCGGAAACCTGTCAAATGTTTACCAAAGTCTTTAATGTTTATCTGAAGTGGTCTCAGCCAGATGGAGGGACATGCATGGATAAGTGCTGAGGTAACTGTATATGGGCTTTACGTTGCTGGGAGTGCGATCTCAGATGATGGCTTGTTGGGGGGGATTTTGGCTCTGAAGTCCCTGCAAAGATTTGTGAGCTGAGCTGTGGCGCATTTTATACGACTCTACAGCCGACACCTGTGTTAAAAGGCAATTAGAAAATGAAACGGATGATTACAAGAGAGGGCACTTCACATCATGAGTCAAAAAATGGAAACCATTTTTGTCAGAAGACGCCAAAATCGTTTGTACAGTATAGTCACTGATTTTGGATAAGTTTTGATATGGCAGGTCATTTTAAGgctttcagaaaatgtatataAGATATCAAAGTTGTACAATCAAAACCTTGGAAAGCTTGTTTGTTTCTGATGTGTCAAAACCATTGTATCATATGAGTATTTTtcaaaaacaagaacaaaatgTCATATATTAGCAGTGAAAGTGTGTGCTTACATTTAATGTTGAATGTCGaatatgaaaaaagaaaatacttcCAAAGAACAACCCTTTGACCTGCAGCCTGCCTGCGACACTCAGGAGTGGCTTTTGTACGAATTAGTGATGTTTAACATGTAGAGCTTCCAAATCAAAGCACTGCAGTGAAATTCAGTAAGGGGGCAGGATGGTGGGGAGGTGACACACCGAGATGGTTTTAGAGGCAACAGATGGATTAAAGTGAGTGAAACtccaggaggagagggacagatgGCACTGAAACAGAGACTGGAGGTCctccatgaaaaaaaaaaaagaaaagtttaaaTTCAACCAAATGGGGCATTTAGAAAAACTGAGTGGGAGCCTACAAACCATTGTGATAGCTTTAAGTGTAAATACTAACTGTACATATTCTGTAttaatgtctaaaaaaaaaatatatatatatcttcatGTAATGTTACTCCAGCACTTTGTATATTGTCTGcccttaaaaataaacaaact

Function

NR:

description
high affinity nerve growth factor receptor-like isoform X2

GO: NA

KEGG:

id description
K03176 NTRK1, TRKA; neurotrophic tyrosine kinase receptor type 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805688.1 True 3975 mRNA 0.49 17 29780179 29811789

Neighbor

gene id symbol gene type direction distance location
LOC120562942 NA coding upstream 34998 29743009 ~ 29745181 (+)
LOC120562990 NA coding upstream 419054 29355633 ~ 29361125 (+)
LOC120562792 NA coding upstream 424637 29352141 ~ 29355542 (+)
LOC120562836 NA coding upstream 431356 29339254 ~ 29348823 (+)
LOC120562877 LOC103362365,LOC104932167,LOC104967986 coding upstream 441205 29337456 ~ 29338974 (+)
pbx2 LOC103356852,LOC108245987,LOC101487230,LOC102193020,LOC100704063 coding downstream 314137 30125926 ~ 30133536 (+)
LOC120561633 NA coding downstream 324492 30136281 ~ 30137569 (+)
tap1 tap1 coding downstream 358225 30170014 ~ 30182142 (+)
brd2b LOC104928643,LOC103356858 coding downstream 374557 30186346 ~ 30205056 (+)
LOC120562234 NA coding downstream 393388 30205177 ~ 30212236 (+)
G77114 bola1 non-coding upstream 195179 29582757 ~ 29585000 (+)
G77097 NA non-coding upstream 314627 29464612 ~ 29465552 (+)
G77033 NA non-coding upstream 341005 29433160 ~ 29439174 (+)
LOC120562102 NA non-coding upstream 355976 29413259 ~ 29424203 (+)
G77014 NA non-coding upstream 414749 29363233 ~ 29365430 (+)
G77172 NA non-coding downstream 1142 29812931 ~ 29813541 (+)
G77198 LOC103388947,LOC102796900,LOC101464846 non-coding downstream 82445 29894234 ~ 29898753 (+)
LOC120562092 NA non-coding downstream 306219 30118008 ~ 30121096 (+)
LOC120562235 NA non-coding downstream 404959 30216748 ~ 30218603 (+)
G77260 NA non-coding downstream 586487 30398276 ~ 30402704 (+)
G77028 LOC104942601 other upstream 367766 29404008 ~ 29412413 (+)
LOC120562177 LOC104942602,LOC104934039,LOC103362363 other upstream 390126 29384135 ~ 29390053 (+)
G77009 ubqln4 other upstream 449921 29328789 ~ 29330258 (+)
mex3a mex3a other upstream 491631 29276147 ~ 29288548 (+)
pear1 LOC104932170 other upstream 536087 29179830 ~ 29244092 (+)
rgl2 LOC101463702,LOC100700084,LOC102303531,LOC102796597 other downstream 262148 30073937 ~ 30109545 (+)
G77239 NA other downstream 311913 30123702 ~ 30124638 (+)
LOC120562443 NA other downstream 539706 30351495 ~ 30360588 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other downstream 875549 30687338 ~ 30731609 (+)
G77447 NA other downstream 1323040 31134829 ~ 31136146 (+)

Expression


Co-expression Network