vwde (wif1)


Basic Information

Item Value
gene id vwde
gene name wif1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 31444788 ~ 31449451 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805699.1
TTGTAGTGTTTCCCAGAAAATCAACAGCGGCGGCGACGAGGGGAAGTCTCGGTACTTTCtcctccatctccgtccaccgcTGGTCCACCGCTGTCTGCCTGcttattcccctctctccctctctctctctctctctttctccccaggagagacaaacaaaaccaaaacaccAAACATGGGTTTTGGGGGTCTCGGTTTAGCGGTGCTCTTGGCCGCCATGGTCACTCTTTGCTCCGCGGGCTCGGACGCGCCCCGGGGAGTCGCGGTCGGGTTCGTTTTTGACCCCAAGGCGAGGTGCGAACCTGCATGCGAACACGGAGGAATCTGCATCCGCAAGAACACATGCTTCTGCTCCAAGGGCTATGAAGGAGAGAGCTGCCAGTATGCCAACTGTTATCCCAAATGTAAGAATGGAGGAATGTGTCTTCGCCCTGGAAAATGCAGATGTCCAGGATTTGGAGGAAGATACTGTCACAAAGTGACGTGTGACGGAGGATGTTGGAACGGTGGAGAATGCATCCCTGTCAACGGTGTGGCAAAGTGTATCTGCCCCTCAAGCTGGACCGGCTCAAAATGCCAGGAGGCAATCTGTCCCCAAGGCTGTGGGAACGGGGGAATCTGTGTGGCTCCAGGAATCTGCAGCTGTCCGGAGGGATGGCTGGGTGGTGCCTGCCACACTGCTGTGTGCACTCAGTCCTGCCTGAATGGAGGGAAGTGTATTTCTCCCGATAAATGCCGCTGTCGCCCCCCTTTCTCTGGCCCTCGCTGCGAGGAGAGGAAGAAGTCCCACTAGTGTAACCCTGCCCGGGGTCAAAGGTCATTGAGGCCCAATAAGGGGCTTCATGCTGACGAGGATAGTTCAATATTTTTAAGCTGATAACATTTgtagttttttaaatgttttaccaTGTATGTCATTTGACTGTATAAacgtgtactgtactgtaatttgtgtcattaaatgaataaaagagTGCATTATCAAAGCTCATTTCACCAAAACA

Function

symbol description
wif1 Predicted to enable signaling receptor binding activity. Acts upstream of or within negative regulation of canonical Wnt signaling pathway and swim bladder development. Predicted to be active in cell surface and extracellular region. Is expressed in several structures, including anterior swim bladder bud; nervous system; paraxial mesoderm; pharyngeal arch; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in breast cancer; renal cell carcinoma; and urinary bladder cancer. Orthologous to human WIF1 (WNT inhibitory factor 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805699.1 True 1004 mRNA 0.52 6 31444788 31449451

Neighbor

gene id symbol gene type direction distance location
tmem106ba tmem106b,LOC103368608 coding upstream 9731 31426759 ~ 31435057 (+)
LOC120561996 LOC102798925,LOC101475373 coding upstream 243528 31176789 ~ 31201260 (+)
mios mios coding upstream 269403 31163419 ~ 31175385 (+)
si:dkey-256h2.1 NA coding upstream 313704 31114749 ~ 31131084 (+)
sept7b LOC103370332,LOC107379178 coding upstream 360271 31065765 ~ 31084517 (+)
si:dkey-30e9.6 NA coding downstream 47592 31497043 ~ 31498486 (+)
arl4aa arl4a,LOC103374731,LOC104928894 coding downstream 51379 31500830 ~ 31504662 (+)
LOC120562640 NA coding downstream 468295 31917746 ~ 31932047 (+)
pkdc LOC102076377,LOC101468599,LOC102793757,LOC102209191,LOC102303972 coding downstream 493960 31943411 ~ 31947773 (+)
herpud2 LOC103361314 coding downstream 500171 31949622 ~ 31959398 (+)
LOC120562710 NA non-coding upstream 428341 31015133 ~ 31016447 (+)
LOC120562708 NA non-coding upstream 456055 30978327 ~ 30988733 (+)
G77399 NA non-coding upstream 467707 30976741 ~ 30977081 (+)
G77260 NA non-coding upstream 1042084 30398276 ~ 30402704 (+)
LOC120562235 NA non-coding upstream 1226185 30216748 ~ 30218603 (+)
G77555 NA non-coding downstream 64685 31514136 ~ 31514561 (+)
G77554 NA non-coding downstream 68312 31517763 ~ 31518618 (+)
G77558 NA non-coding downstream 75732 31525183 ~ 31525583 (+)
G77591 NA non-coding downstream 161607 31611058 ~ 31611311 (+)
G77592 NA non-coding downstream 163030 31612481 ~ 31614315 (+)
G77447 NA other upstream 308642 31134829 ~ 31136146 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other upstream 713179 30687338 ~ 30731609 (+)
LOC120562443 NA other upstream 1084200 30351495 ~ 30360588 (+)
G77239 NA other upstream 1320150 30123702 ~ 30124638 (+)
rgl2 LOC101463702,LOC100700084,LOC102303531,LOC102796597 other upstream 1335243 30073937 ~ 30109545 (+)
G77682 tbx20 other downstream 526867 31976318 ~ 31979909 (+)
LOC120561717 NA other downstream 955682 32405133 ~ 32421472 (+)
G77888 NA other downstream 1650962 33100413 ~ 33101534 (+)
bmper bmper other downstream 2376636 33826087 ~ 33879132 (+)
LOC120562157 NA other downstream 2444909 33894360 ~ 33904285 (+)

Expression


Co-expression Network