arl4aa (arl4a,LOC103374731,LOC104928894)


Basic Information

Item Value
gene id arl4aa
gene name arl4a,LOC103374731,LOC104928894
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 31500830 ~ 31504662 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805700.1
tctctctctcacacacacacacacacacacacactctcgttCACTCTCTCCACCATGCTCCAAACACACAAACGGACAGAAAAGCGAAAACACGCCGACTCTCCGAGCTGACTATACGTATTCGTGTGGCGTTGGTCCAGACTGACAGCAGTGCCATCAGCGGTAGACCCACACTGGGACATAGAGGACAGACAGGGAGGGTGTCTCCGCTTTTGAGGAAGGATTTTCGATCGTTGTTGCCGACATACGAGGCGGAAATACACAGTTATTGCTGCGATTGTTTTGGAATATAATCAGCTCTAAGGATTATTGCTGGACAATTGGATACAATCTCCCAAATCATCAGTCCTTCCTCATGAAGTAAGATGGGGAATGGATTGTCAGAACAACCTAGCTTCCTCTCCAACGTCCCGTTCTTCCAGTCGTTTCACATCGCCATCCTCGGCCTGGACTCCGCAGGGAAGACCACCGTTCTGTACAGACTGCAGTTCAATGAGTTTGTGAACACGGTGCCCACCAAAGGTTTTAACGCGGAGAAGGTGAAAGTGTCTCTGGGCAGCCACAGGACtgtgacgttccacttctgggacgTCGGTGGCCAGGAAAAGCTACGCCCCCTGTGGAAGTCGTACACACGATGCACGGACGGCATCATATTTGTGGTGGACTCCGTGGATGCAGAGCGCATGGAGGAGGCCAAGACTGAGCTCCACAAAATCGCCAAGACCACTGAAAACCAGGGGGTACCCCTGCTGGTGGTAGCCAACAAACAGGACTTGAGACACTCTTTGGGACTTGCTGAAATTGAGAAAGTTCTGTCACTGAAAGAACTTGGCCCTGCAACTCCCTGGCACCTGCAGCCAACCTGCGCTATCATAGGCGATGGACTCCGGGAGGGTCTGGACAGACTCCATGACATGATCCTTAAAAGGAGAAAGGTGCTGCGGCAGCAGAAGAAAAAGAGATAAACCATGTCATGAGAAAGACTTGTCTGCTGTTATATGTGAAGGAAACAAAGAGTATTCTCCTCCTGGGTGGATAAAGGCATCCACTGCAGGTCCACATTCAAAATGCTGAGTTTTATCAGTCCAAAATTTAGGTTTTAGGATTCCCTGTCTTGGTCTTGTGATGATGCTGTTGAGCAGGAAGTGAGACTTAAAGAAATACAGTATGAAGATGAGAAAGTTTCAGACATGTTTGGATATGATTATAAAGAGTTTATATGGATTTAAAAGCACTGAGGGTTTGGGGTCTGGAAGGGTGGTGGTGAGAACTTAAGGATGCTGTATGTTTCATGAATGGCTGTTCCAAACAATATTACcaaaaataatttaagaaaaggCTTTGACTAGTTGAAGGGTTATTTGGTAAATGATTGAACATTGTTACACCAGAGGGGCAACAAAATATAcatcagttttattttactgttttatatgttgtatataaaGTGTTCATTTTTTACACTGGACTTTCTTTGTGAAAGAAAAGTATTATCATGCTTTACAGCATTATTATTATGGCTTGCTGTCTTATATctcattttttaaaaagcactttAGAGTATCACTTCTTCGTATgaagtttacagtttttttaaatagagcATATTGTGTTggattttacagaaatgtttggGCAAAATACAACAGATGCTACTGTAGTTGGTCCACATTGTCATTAGACAGGTTATGCATTAAGTTTTgcttaataaaacatatttagaGCAAGGTTGACGGTGAAATGGAGGGTGTTATTATGTCCACATTGTCGTTCTATTTGAAAAGCAAAGAAGTTCAGAATTGTAACCTGCGATTCCTTTAGCTTGTTTGAATCCGTAGGGAGCGACAAAAAACAGGCAGTGTGTGAAAACATCTGTTAAGTGTGCCCTTTAACCGTGCACCAAACCACCAGTTTCCCCAGAACTAGTTCTGTCATGTGAATGTGATACAAGGGGTttcctaaaaacaaaaacaaaatgcctGCTCAGTCAACCTATGCTCTAATTATCACTTTGGAAA
>XM_039805701.1
ctctctctctctctctctctctctctcacacacacacacacacacacacactctcgttCACTCTCTCCACCATGCTCCAAACACACAAACGGACAGAAAAGCGAAAACACGCCGACTCTCCGAGCTGACTATACGGTTATTGCTGCGATTGTTTTGGAATATAATCAGCTCTAAGGATTATTGCTGGACAATTGGATACAATCTCCCAAATCATCAGTCCTTCCTCATGAAGTAAGATGGGGAATGGATTGTCAGAACAACCTAGCTTCCTCTCCAACGTCCCGTTCTTCCAGTCGTTTCACATCGCCATCCTCGGCCTGGACTCCGCAGGGAAGACCACCGTTCTGTACAGACTGCAGTTCAATGAGTTTGTGAACACGGTGCCCACCAAAGGTTTTAACGCGGAGAAGGTGAAAGTGTCTCTGGGCAGCCACAGGACtgtgacgttccacttctgggacgTCGGTGGCCAGGAAAAGCTACGCCCCCTGTGGAAGTCGTACACACGATGCACGGACGGCATCATATTTGTGGTGGACTCCGTGGATGCAGAGCGCATGGAGGAGGCCAAGACTGAGCTCCACAAAATCGCCAAGACCACTGAAAACCAGGGGGTACCCCTGCTGGTGGTAGCCAACAAACAGGACTTGAGACACTCTTTGGGACTTGCTGAAATTGAGAAAGTTCTGTCACTGAAAGAACTTGGCCCTGCAACTCCCTGGCACCTGCAGCCAACCTGCGCTATCATAGGCGATGGACTCCGGGAGGGTCTGGACAGACTCCATGACATGATCCTTAAAAGGAGAAAGGTGCTGCGGCAGCAGAAGAAAAAGAGATAAACCATGTCATGAGAAAGACTTGTCTGCTGTTATATGTGAAGGAAACAAAGAGTATTCTCCTCCTGGGTGGATAAAGGCATCCACTGCAGGTCCACATTCAAAATGCTGAGTTTTATCAGTCCAAAATTTAGGTTTTAGGATTCCCTGTCTTGGTCTTGTGATGATGCTGTTGAGCAGGAAGTGAGACTTAAAGAAATACAGTATGAAGATGAGAAAGTTTCAGACATGTTTGGATATGATTATAAAGAGTTTATATGGATTTAAAAGCACTGAGGGTTTGGGGTCTGGAAGGGTGGTGGTGAGAACTTAAGGATGCTGTATGTTTCATGAATGGCTGTTCCAAACAATATTACcaaaaataatttaagaaaaggCTTTGACTAGTTGAAGGGTTATTTGGTAAATGATTGAACATTGTTACACCAGAGGGGCAACAAAATATAcatcagttttattttactgttttatatgttgtatataaaGTGTTCATTTTTTACACTGGACTTTCTTTGTGAAAGAAAAGTATTATCATGCTTTACAGCATTATTATTATGGCTTGCTGTCTTATATctcattttttaaaaagcactttAGAGTATCACTTCTTCGTATgaagtttacagtttttttaaatagagcATATTGTGTTggattttacagaaatgtttggGCAAAATACAACAGATGCTACTGTAGTTGGTCCACATTGTCATTAGACAGGTTATGCATTAAGTTTTgcttaataaaacatatttagaGCAAGGTTGACGGTGAAATGGAGGGTGTTATTATGTCCACATTGTCGTTCTATTTGAAAAGCAAAGAAGTTCAGAATTGTAACCTGCGATTCCTTTAGCTTGTTTGAATCCGTAGGGAGCGACAAAAAACAGGCAGTGTGTGAAAACATCTGTTAAGTGTGCCCTTTAACCGTGCACCAAACCACCAGTTTCCCCAGAACTAGTTCTGTCATGTGAATGTGATACAAGGGGTttcctaaaaacaaaaacaaaatgcctGCTCAGTCAACCTATGCTCTAATTATCACTTTGGAAA

Function

symbol description
arl4a Enables GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to act upstream of or within brown fat cell differentiation. Located in cytosol; nuclear lumen; and plasma membrane.

NR:

description
ADP-ribosylation factor-like protein 4A

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07945 ARL4; ADP-ribosylation factor-like protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805700.1 True 2021 mRNA 0.43 3 31500847 31504662
XM_039805701.1 False 1892 mRNA 0.43 2 31500830 31504662

Neighbor

gene id symbol gene type direction distance location
si:dkey-30e9.6 NA coding upstream 2344 31497043 ~ 31498486 (+)
vwde wif1 coding upstream 51379 31444788 ~ 31449451 (+)
tmem106ba tmem106b,LOC103368608 coding upstream 65773 31426759 ~ 31435057 (+)
LOC120561996 LOC102798925,LOC101475373 coding upstream 299570 31176789 ~ 31201260 (+)
mios mios coding upstream 325445 31163419 ~ 31175385 (+)
LOC120562640 NA coding downstream 413084 31917746 ~ 31932047 (+)
pkdc LOC102076377,LOC101468599,LOC102793757,LOC102209191,LOC102303972 coding downstream 438749 31943411 ~ 31947773 (+)
herpud2 LOC103361314 coding downstream 444960 31949622 ~ 31959398 (+)
dpy19l1l dpy19l1,LOC102792675 coding downstream 585496 32090158 ~ 32124377 (+)
LOC120562212 NA coding downstream 640730 32145392 ~ 32149331 (+)
LOC120562710 NA non-coding upstream 484383 31015133 ~ 31016447 (+)
LOC120562708 NA non-coding upstream 512097 30978327 ~ 30988733 (+)
G77399 NA non-coding upstream 523749 30976741 ~ 30977081 (+)
G77260 NA non-coding upstream 1098126 30398276 ~ 30402704 (+)
LOC120562235 NA non-coding upstream 1282227 30216748 ~ 30218603 (+)
G77555 NA non-coding downstream 9474 31514136 ~ 31514561 (+)
G77554 NA non-coding downstream 13101 31517763 ~ 31518618 (+)
G77558 NA non-coding downstream 20521 31525183 ~ 31525583 (+)
G77591 NA non-coding downstream 106396 31611058 ~ 31611311 (+)
G77592 NA non-coding downstream 107819 31612481 ~ 31614315 (+)
G77447 NA other upstream 364684 31134829 ~ 31136146 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other upstream 769221 30687338 ~ 30731609 (+)
LOC120562443 NA other upstream 1140242 30351495 ~ 30360588 (+)
G77239 NA other upstream 1376192 30123702 ~ 30124638 (+)
rgl2 LOC101463702,LOC100700084,LOC102303531,LOC102796597 other upstream 1391285 30073937 ~ 30109545 (+)
G77682 tbx20 other downstream 471656 31976318 ~ 31979909 (+)
LOC120561717 NA other downstream 900471 32405133 ~ 32421472 (+)
G77888 NA other downstream 1595751 33100413 ~ 33101534 (+)
bmper bmper other downstream 2321425 33826087 ~ 33879132 (+)
LOC120562157 NA other downstream 2389698 33894360 ~ 33904285 (+)

Expression


Co-expression Network