sntb1 (sntb1)


Basic Information

Item Value
gene id sntb1
gene name sntb1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 16858023 ~ 16897965 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805708.1
ACATTAAGTGTATGTAGGGTCTGGAGATGGGATCGGCTGACGGCGGGTTGAGCAAACTCCACCCAGCTGACAGGATCCCTGGCAGGCGGAGCGGGGAGCTGCTTGCTCCGAAAGGGCTCGGGCTGGTTGGTCGGGACGCTTGACAAGTCCCGCAGAAAACTTGAGAGGGGCAAAGTCCAGCCTGAGTGTGAGGGAGACAGAGTGGAAGTTGATGTGTGAGAGCGTGCTGGGGACATAACCACATGtaattttaaagaaatgctccAAAGATGGCGGTGGTAATAGCGAGTGGAGTTTCAGGTGCCTCCGGAGTGCAAAAAAGTGGATTTGTGGAGGTTTTGGTGCGGGAGCGTTGGCACAAAGTTTTGGTCAGCTTGAACGAGGAAGCGCTCACGTTAAGTTGCGAGGAAAGCTGCGTTAACGACAACGTGAACGACAATGTCAACTCCAACGGCGTTACCAACGGATCTTACcttgacaacaacaacaccaactCCAACAACGGCCCCCAAACTGTGCGCACCGCGTTCACGGACCTCCCGGAGCGAGTGCCCGAGGCGATCGCCAACAGAAAGCGGTGCGTTAAGGTGACCAAGCAGGAGATCGGGGGACTTGGGATCAGCATCAAAGGTGGGAAGGAGAATAAAATGCCTATCCTCATCAGTAAAATATTCCAGGGGCTCGCAGCGGACCAGACCCAGGCTCTGTATGTCGGGGACGCCATCCTGTCCGTGAATGGCGTGAACTTGCGGGACGCGACCCACGACGAGGCTGTGCAGGCGCTAAAACGGGCCGGGAAGGAGGTGACACTGGAAGTGAAGTACATGCGCGAGGCCACACCGTACGTGAAAAAGGGCTCCCCTGTGTCTGAGATCGGCTGGGAAACCCCTCCTCCTGATTCTCCCCGTCTCGGCAGCCCTCCCATCACCTCCTCATCTGAACCTCCGAGCTCTCCTGCCCAGCCCTCCCTGTCTCTGCAGGGCGACAGGAGGTGCATACCCCTCAAGATGTGTTGTGTAACCCGAGCCATGACCACACCAGACCCtgagaacagACAACTAGAGTTGCACTCCCCGGACGCTAGGCACACTGTGGTGCTGCGTTGCTCAGACCAACCATCTGCCCTGTCCTGGTTCACTGCCATGCACTCTGTCACATCCACACTGGCACAGCGGGCGCGGGCAGAGGTTATCCAGAACACAGCCAGGACGGGGGTAGCTGGCAGCAAAGAGATACGACACCTGGGATGGCTGGCTGGGAagacagagagtgagaagCAGTGCTGGAAGCCGGTGCTGGTGGTGGTGACGGAGAAAGACCTTCTGCTGTATGAGACTTTACCACGAGGCAAGGAAGCCTGGCAGAGCCCTGCACACACTCATCCACTGTTAGCAACGCGTCTGGTACACTCTGGCCCTGACCGGGGGTCGCCGCGTTCTGGTACAGAGCTGTTCTTTGCCACTCGGACTGGCACACGACTCGGCATTGAGACTCACCTGTTTCGGGCTGAGACCACCAAGGATCTGTCCCTCTGGACCAGACACATAGTCAACGGATGTCACGCCTCAGCTGAGATGATCAAAGAAGTCACGACGAGTTGTCTTTACCAGAGTCAGGAATGCCGGCTGGTGATTCACTACGAACAGGGCTTCTCTGTGCTGGCTGACCCCAAACTAGGAGacggggaggagaggggagctCACACACCCACCAGGCCCAGAGTGCTCCTCTCCTACCCCTACGAAAAACTGAAGTTGTCCTCAGATGACGGAGTTCGCATGCTCTTCCTTGACTTTggagggaaggagggggagATTCAACTGGACCTCCACTCTTGTCCGAAGCCGATCGTCTTTATCCTCCACTCCTTCCTCTCTGCTAAGATCTCCCGCCTGGGTCTGGTGGCCTGACCTCTCTAAAGGGACATTTCATCTCTTTTGAAAACAGAAATCCACCTTGTTTCTCCACCTCTCTGCAGCCCGCATGCAGTAGTACACCACGTCAAACGCTGTCAGTCGGGGACCCAAGCTGAGTGAATGTAGCCTCTATTGACCTTTTTTGGGGTCTCCAAGTTAAAGAAACACTGGAGAAACCAATTCAGGTTGGTTTTGCTTTGGGTGAAATGAACAGATTATTTTGGGGGATAAACCCTCCCTTTAAGGGCTGCAAGGACTGAAGTGTTGACTGAAGAACCACAGAAGAAAACAGGGACTGGACTAGAAGCAGTGGGATGATATATACAGAGGGACACAGATTGGGCATTACTGTCACGTCCTGGACATGTGCAGTACGGTTGAGATGAATTTACTTTTAATTCAATCAAGATGTAATGGCAAACTGCCTTCCATTCaccaattatttaatttattcacCATTAGCTCTGAAAGAACATTCTGAATTTCACTTGGCCATTTTTCTTCACCAAACATTTGACACACTCTGGAAAAACTTTATGCATTTGTCTTTGTTAGTGTCTCCTGAAATGTCTTGTTAGCGCTGTCAGCATTCATCATTGAAAGTGGCGGGCACAATCACCCACACAGTTTCCCACAAAGACAGCTGACTCAAATTCAGAATGTCATAGTATTCTTTTAACAGGTTGCATACTGTGACCACCCCGTGGTCAAAGTATTCCAGTGTTTAACAGTGATCTGAAGTCAGTTCTAATGTCTTCAAGTATATCTTCTTTTAAACCCTCAGATTCAGTTAACATGAATTATAATATACTCAAgcattcagatttttttcatcacatttaaattccacatactatatatcACTCAAAAACTCAGCATTTACTATTGTGTTTCTGATACATACAACTGTGTTCCACAGAAATAGGGGTCATTCTAATGTTCCAATGGTCCTTTGTTCCCCAGCTCTAAATTGTACTGACACaggtcttagtcttagtctagATAATAGTTACTATTTTGTATGTAGGAAAAAGTCCCAAACATATTTCAGCCCTAAatgcagaagaaaaacaaaagatgaaaaagggacaaaaattaTTCTGAAACTTTTTAGGGTTAGGAAATCAAAAGTAGTTGGCAATTGCCATTTTCAAACAGGTTAAGATTAGGAAAGAGGAAAGGGTGAAAACTATTTctgaaatattttaatttaaaacaggtcaaatttgtTAACAGAATATTGAACTTGGGAACATAGGACCATGGCACCATAGATACATTCCCAAATACTACATATTATGCATTAAAGTGTATGATCTCTAAATAGTACCATAAACAAACAATCAGGTAATGTTTAGAATACACATTTTGACTAAATCAtttaaagcaatagtttgaTCTTTTAGGGAAATGCACTTTTTCATGTTCTCGCCAAGAGTTAAATTAGATGATCTACAGCCAgtagccggttagcttagctttacGTAATGACTGGCAACAGAGAAACGGCTAGCTAGTTGAGCTAGTTACTCACTGAGCTTTAGAgatgctggtaggtggattttgttaccttcggACAAGCTAGCCGTTTCCTGGGTTTTTGCTCATCTATCCAGCTACTAGCTGTTGTCTTATATTTAACAGACAGctgtgagagtggtatcaatattCTCATCTAACTCACAGCATGAAAGCCAGTaaatgtatttcccaaaatgtttaaCTATTCCAGAAATGGTCTGCACTCTGATCAGACATGATGAAGCTGTTCAATCCTTCCTCCTTTCAGAGTGGACAGTGAACTGTTTGATACTCTCTGAAGAACTGTCACATTTGCCAAACTGCCATGAGTACTTCTaatattcatattttgaaaACTGAAACGCAACAGTGCCACAGTCACCCCTTCAAGTATTATTTGTCTTTCATTATAGCAAGGTAGCCATGATAGGAGTCCTCAATCCTCCTTCAGCCAGTGCAGGTCATTATTGTGTTGGGATGTTATGCAGCAGATCAAATCTGTATAGTACTCTGCACTGTCTGTGACATGGCTGGCTGCCGCGGTCTTTCCTCCTGCCTTCAGATGACAGAGAAGAAGACATTTGAAACATTTGAATTTTGAACGAAATTAATCATAGAGATCAAAGGATGGAGCAACTTTCTTCTATAATGGCTACTTTACTTTTAGTTATGAGTGCAGAAATACAACCAACCAGCAGTAATTTTGTGTTTGCTCTTTTCTTACATCAAGGAAATATCAAACACACATttccaacaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

symbol description
sntb1 Predicted to enable structural molecule activity. Predicted to be located in cytoplasm; cytoskeleton; and membrane. Predicted to be part of dystrophin-associated glycoprotein complex. Predicted to be active in synapse. Is expressed in epidermis; forebrain; otic vesicle; and pronephric duct. Orthologous to human SNTB1 (syntrophin beta 1).

NR:

description
beta-1-syntrophin

GO: NA

KEGG:

id description
K24064 SNTB; beta-syntrophin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805708.1 True 4278 mRNA 0.47 8 16858023 16897965

Neighbor

gene id symbol gene type direction distance location
LOC120562165 nov coding upstream 7791 16845953 ~ 16850232 (+)
LOC120563118 scgn,LOC103369094,LOC103151166,LOC106960462 coding upstream 26860 16816442 ~ 16831163 (+)
LOC120562315 NA coding upstream 41766 16732632 ~ 16816257 (+)
LOC120562939 NA coding upstream 128675 16726348 ~ 16729348 (+)
LOC120562690 NA coding upstream 133467 16721636 ~ 16724556 (+)
LOC120561714 NA coding downstream 86646 16984611 ~ 16990597 (+)
LOC120561713 ptk2 coding downstream 97344 16995309 ~ 17065077 (+)
mrs2 mrs2,LOC105917271 coding downstream 181442 17079407 ~ 17093876 (+)
LOC120562623 NA coding downstream 197091 17095056 ~ 17107677 (+)
LOC120562784 cpq coding downstream 211911 17109876 ~ 17129613 (+)
G72852 NA non-coding upstream 126979 16730837 ~ 16731044 (+)
G72801 NA non-coding upstream 363448 16494237 ~ 16494575 (+)
G72798 e2f3 non-coding upstream 367642 16489593 ~ 16490381 (+)
G72797 NA non-coding upstream 372104 16485713 ~ 16485919 (+)
G72796 NA non-coding upstream 375525 16482255 ~ 16482498 (+)
G72859 NA non-coding downstream 61823 16959788 ~ 16962840 (+)
G72879 NA non-coding downstream 93751 16991716 ~ 16991989 (+)
G72862 NA non-coding downstream 167624 17065589 ~ 17065911 (+)
trnar-acg_16 NA non-coding downstream 470738 17368703 ~ 17368775 (+)
G73019 NA non-coding downstream 494303 17392268 ~ 17403627 (+)
G72750 LOC104952694,LOC106925895 other upstream 785822 16018359 ~ 16072201 (+)
irx4a LOC103360443,LOC102233360,LOC103478376,LOC108232226,LOC101474805,LOC102784018,LOC102295185,LOC102202030,LOC104961814,LOC103145173 other upstream 1297731 15553464 ~ 15560292 (+)
LOC120561718 LOC107101581 other upstream 2225302 14626478 ~ 14632721 (+)
G72506 NA other upstream 2431843 14425794 ~ 14426180 (+)
LOC120562174 rbms3,LOC101066789,LOC103370884 other upstream 2487932 14175817 ~ 14370091 (+)
G73031 LOC103366415 other downstream 551620 17449585 ~ 17452568 (+)
ubxn11 NA other downstream 558678 17456643 ~ 17461118 (+)
G73123 phactr4 other downstream 747548 17645513 ~ 17647186 (+)
paqr7b LOC107588505,LOC104938075,LOC103388542 other downstream 852965 17750930 ~ 17779130 (+)
kcnn4 kcnn4,LOC104953880,LOC100704922 other downstream 1501091 18399056 ~ 18420721 (+)

Expression


Co-expression Network