LOC120562192 (LOC104934671)


Basic Information

Item Value
gene id LOC120562192
gene name LOC104934671
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22448519 ~ 22455722 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805765.1
TGATGCTCGTAAACTGCCGAGAGAAAGagctagcaaagacacaaaccGATGAACTGCCGGCATAGTCGGTGGGtgtgagaaacagagagagagagagagagagagagagagagagagagagagagagagagcgagcgagcgagCTGATGCTGGACGCCCCGATGCTGCTCAAGCAACGGAGTGTGTATTGACGGATCAGTCGTATCAAAGTAGGAGATAGAGCCGTTAACGACTGTTTCTGGAAGCTGCTGTTTTAAGCTCACATTACTGAAGCAATGCAGTCCCAGGGCAGCACTTCCTCTCAGCCCTCCTTCGATTCCCTGAGTTTCAGTGACAGCCTCTTGTTGAGCGACTCGGAGCAGGCAGAGGACGACACAGACGTCTTCCTGACAGACAGCTCATCCCCTGTCATCATCAGTGGTGTGGATGGGGCTACGACTAATGGGGACAGAGGGTCAGAGAGTCCCGGGTCCCAGTGGACATGCGACGGCTTCACAgataaagaggaagaggaggagtcaTACAGGTCGGAGAACAGAACCAAGGCAGCTCACATCAGTTTGGGCGAGACAGATCCCACAAGCCAGATTCCTAAATCACAGGGAGACCTGCTGTTTGCTCAAAAGTGTGCTGAGCTACAGGGTTTTGTCAGGCCCCTTCTGGAGCTGCTGAATGGACTGAAGAGGGGCCGCTTCGATCGAGGTTTGAGTAGCTTCCAGCAGAGCGTCGCCATGGATCGGATCCAGAGGATCGTGGGTgttttacagagacccaacagcgGGGAGAAGTACCTGAACACTCTGCTCCAGGTGGAGATGATGCTGAAGCTTTGGTTTCCTCAGATCCACACTCAGCCTGTCTCTGCCGCCTCCAGCGTGGCCGCATCCCCTGCTCACTCAATCCAAGACACTTCCAGCTCCACCCCGCCGCACAAGCACAGGGATCAGTTACACATTCCCGTCAAGAAGCGCAGACTCAGCTGGACAAGTATGGACTCCCCCACGCCTTCCCCTGTGCTTCTCAAGTGCCCTCGTATCAGTGTGAAAGACAAGAAGGGGAAGCAAGATTGTGATGAAAGGGACAGCCCTCTTCCTCCATCATTGGAGCCTGATGCAAACCAAAATTCACCAGATGTTGCTGGTAACAGCCAGCTAAATGAGGACACAAAGGGAAAGGACAGTGGCAGCGAGGAACTAGGCAATCAATCAAAATACCAAGCAGGTCAGAGCTCTGAGCCGAGCCTGACATGGGTTCACGTTGCCCCCATCCTGTCCCCACGAAAAGCTTGCCCTCCACATAAGGGCACAACAGTGGCAGACAACAATGAAAACCAGCCAGTCACTGTCATCCTCCCACCCAGCAGGAGGGGCAGTCCAGCTATGCAAGACAGCTCCATCTCTTCTACCACACCTTACAAGCACCCCAAAAATCTGAAGAAGCCAATCGGGTGCCAAAGCCAGCCAATTGCTGGACAACAGAGTGAGATCACAGAGACATGTCCGGGTGAAAGTCAGCCTCCTCAAGTCACGCTTACGCCTTTGCCCGAGGTATGCCCCACTCCCTTGGAGACCTGATGCATTGAACAACGTCAAGCAAAGAGCCGGCAGCCTTGCTTTGTTACACCACCGGGCTAAATGCTGCTGTGTGAGGAAGAGGCTGAAGGCCTGTGATTATAGATGCATTAAAGGAAGGAAGGGGAGGAAAGAATtttatgtgatttaaaaaaaaaaaaaaagagaaatgatgGATCATACATAACCCCTCATGAAAACCACAATTGCAACCGATATTTCAAACAGCAGGACATAATGTGTTTAAATGAATCAAATCTACTAGAGTTGATAATCAGAATAACATAATAATCTAAACGGGCACAAAAGCAGTTGTGGTTGAGGGGGGATGAGAAAGAACACCTAAAGCCGGAAGGCTATTTACAGCTTGTTGAGTAATGATCGATCGGAGAGATTTTGAAGAATTTTGTGCAGCAAATAATAGATTCTTCTCAGCATGAAAGCAATCACTATATTCAGAGATGACTGTTTAGGCAGACATCTAACTTGAGGGACAAACTTGATCCGAAATTTGAAAAGCTGATGTCAATATTTAGAATGAAAGCGTCCAAGGTTTGTTGTGATGAGGTAACTTCAATCAAGAGTGAGTAACGCAGTGTGAGCTGAATTTGATGAGGTCTTACGGCAGGAGACACGCTTGACGTTACATTCGCTTGTAGATAGAATTGAGGCATCTGGCTTGAAGAGGAAAAGTGACATTGAAGTCATTAATAATCTTGTAGCTAGAGATGTGAGAAATACAGTGTACAGAACGCAGCACTATACTGTACGTGTGGTGTGTTAAGAGTCATCGGAGACTGGAAAAAGTTATGTTAATAAAATTACGAATGTAATCCAAGAACTGTTTGGGCACTTGGCATCGAGAGGTATGACATCACTGCAATCGGAAGTAAACTTTTCTTGTCATGCTGCGGATCAGATGTCTCTGCCCGGTCCTTGGCTGCAAACTGACGAAAAAACAAGGACCACTCAAAGACCTATGACTCTTGAATCCCACGGTTAATTTATTCATGTGTTGATTGGacactgcatttatttattgtttatatttatttattgggcAGATGAATATTGCCTGCTGTGCGATTGCATAGTTTGGCTTACAATTCTTTTAAGGGTATTGGGAATATGCTGgtgactgttgttttttttattgctatTATGAGGAGAAGGAAGTGAAATGTATGATTGGACTTTGGACTACTGTGCCTTTTTACCAAATAGGATGTGTTCAGAAAAGCATTTGGGGCTTTCAGTGCATTCATACTGCGTTTTGATTGTTTGCTTGTATTTCACAAAAGCAGTGCACATTCAATCATGAAAGCCCACATGTAGTCATTTTCATCTTGCTTCTACAGTTAATACACACAGCATCCAAACCAACAGTATCATCAACTATCTATCtactgcttaaaaaaaaaaaaaacggcatccAGCACTAGTATTCAGACATCTACAGTTACGTAAACTGCCTACACCTTCGACTAttacacacaccaacaacagtGGCTACGTATTCAAGTGTCGCCTTCCTTTGGTAGCTTTTCTGTTGGTTGTGATCAACAGAGGAAAGCCTGAACTGCACCACAGTAGCTGGTGCTCttgaaaacttgaaaaaaactaaatatacaCTTAAGGGAGGAAATCTTTATTTGCACCACCCTCTACTGCTGCTATTGTTATTCTGATTCCTGTTCTAATTTAGATGTTTGATAGGAGAAATCTACTCACAATATTCTTCTAAATCTAGGAGGGGTTTTAGCGGTGTGATTGGATATACTTATATTAAGAaagtattgtaaatattaagactaaaatatttttaaaattggTATGAGTGATTCATACACTATTTACATAAATAGAGAGGAGGGATATTCACGTACCTGTCTCCTCCTCCAAAAAAGCACCATATGTGAACACAGAGCCACTGGCAGCCTCTATGTTTGTGGAGTAAGAGTGTACAACCCTCAGTCACAGACCCAGAGTCAGACCATCTTACCCCATCTTAAAATGTGACGGTATGGCGTGCCAGACGCTGACTCTCGGTAAGGCTGGGGCTGTGCTCCACCCCACTCCTGTTTACGGTTGTGGTATGACAGAAACCAATTGCACTTATTTTTCATTGTTAATGTCCTATTTTCATGTATGTTTTCTACTACACCAACCACTGCTGATTGGTCACAAATAATATGTCTTGTTTATTTTAGCTGCCCTTTTTCTTCTTAAACTGTAAAAGCTGACTGTagttccctcctcccctccccttcccCTCCCCCACTCTGCTGCATTCATCTGCCCTTGCCCTCTCTCCTTCAATCCTGTTAGTATCTTTTCTATCTAAAGTAAACGCTGTCTTTCTCTCACCCCATCTTTACATTATATTACTGTTCTGGCTACTTTTTCAAAAATGATGAACAGGGAAAAAATCTTTTAATAAATGACAAATTTTTGAAAGCTGAA

Function

NR:

description
PREDICTED: treacle protein-like

GO: NA

KEGG:

id description
K21599 CIART, CHRONO, GM129; circadian-associated transcriptional repressor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805765.1 True 4034 mRNA 0.45 6 22448519 22455722

Neighbor

gene id symbol gene type direction distance location
polr3c polr3c coding upstream 82366 22357791 ~ 22366153 (+)
gba gba coding upstream 102969 22339629 ~ 22345550 (+)
dap3 dap3 coding upstream 109586 22332416 ~ 22338933 (+)
fdps fdps coding upstream 152614 22289236 ~ 22295905 (+)
rab13 rab13 coding upstream 169620 22273092 ~ 22278899 (+)
prpf3 prpf3 coding downstream 5409 22461131 ~ 22469782 (+)
tars2 NA coding downstream 35031 22490753 ~ 22506497 (+)
adamtsl4 LOC104944899,LOC101074756,LOC106573456 coding downstream 63396 22519118 ~ 22556292 (+)
cers2b cers2,LOC108241136,LOC102789054,LOC101467232,LOC102212238 coding downstream 133405 22589127 ~ 22606928 (+)
LOC120561960 NA coding downstream 171625 22627347 ~ 22627532 (+)
G74769 NA non-coding upstream 193041 22255271 ~ 22255478 (+)
G74765 NA non-coding upstream 202756 22245489 ~ 22245763 (+)
G74764 NA non-coding upstream 205486 22242817 ~ 22243033 (+)
G74760 NA non-coding upstream 264482 22183783 ~ 22184037 (+)
G74737 NA non-coding upstream 318605 22129652 ~ 22129914 (+)
G75042 NA non-coding downstream 463030 22918752 ~ 22920103 (+)
G75045 NA non-coding downstream 468870 22924592 ~ 22925155 (+)
G75065 NA non-coding downstream 527170 22982892 ~ 22987322 (+)
G75069 NA non-coding downstream 538698 22994420 ~ 22994706 (+)
G75077 LOC104960445 non-coding downstream 561085 23016807 ~ 23018595 (+)
rusc1 LOC104958857 other upstream 135999 22264939 ~ 22312520 (+)
fam189b fam189b,LOC102796117 other upstream 160225 22279556 ~ 22288294 (+)
kcnn3 kcnn3,LOC104958859,LOC106930148,LOC106962094 other upstream 199992 22197712 ~ 22248527 (+)
snx27b snx27,LOC102196713,LOC102288812 other upstream 293835 22139780 ~ 22154684 (+)
LOC120561537 NA other upstream 309296 22137547 ~ 22139223 (+)
rprd2b NA other downstream 14256 22469978 ~ 22489944 (+)
celf3b LOC104944900,LOC100708447,LOC107088821,LOC107379582 other downstream 104222 22559944 ~ 22585572 (+)
arnt NA other downstream 154296 22610018 ~ 22625953 (+)
LOC120562537 NA other downstream 204757 22660479 ~ 22667885 (+)
LOC120562539 LOC102295960,LOC100711672,LOC102209551,LOC101487210,LOC102786116 other downstream 233348 22689070 ~ 22705416 (+)

Expression


Co-expression Network