scnm1 (LOC104949611)


Basic Information

Item Value
gene id scnm1
gene name LOC104949611
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 32905361 ~ 32911192 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805770.1
CAACATTGCTATCAGCATTTAGCTTCTCGTTGTCGTGAAGTAGCTAGCTAGTCAACTATGCTAACCTGTTACTGACATCTGTTTCCAGATTAATAACTATAATAATTATGTCTTTTAAAAGGGAAGGTGATGACAAGAGTCAGTTGAACATCCTGAAGAAACGGCGTGTGGCAGATCTTCTGTCTCATTATATTCCAGAAGATGAAGCAGCTCTTATGAAAAATGGAAGATACACTTGCCTTGTGTGCTCCTACCGTCCCGTGTTTGATACAGTTGATACGTTGACGGTCCACAGAAACGGGAAAAAGCATCTAGAAGGATTAAAAGCTTTCTATGGCAAGAAAGCACGGTTGAAGaatgaaatgacaaaaaggCACCATGAAAACTACATCCAGACTGAAGACACAAAACAGGAACCCTCGTGTTCAGCCCCTTTGCTGGCCCAAACACGGAAGCTTACACATCACGCTTTGTTGAAGACTGTACCATATAACAGCTGCCATACTAAAACCAGtACAAAATCTGGAGAAGGAGCCCGGAGAATCAGCTCAGATCCCAGTGACAACTCTTGCAGCGAAACAGCATCCGAACAAGAAAAAGCATGCCAAAAAACTAAAGTTTCAAACAGTTTATCACAAAGCACGTTTAATGGCTGCACAGCAGccgTTGAAGGGTCGCATCCGGACATTAAGGCCGAGGCCTCAGTGACACAGGAGGCAGAGCCCATAACAgcgcagaggaggagagagctgGAGCACTACCTCAAACTGAAAAGTGACGGGTGGTTGCCAGACCGAAGCGGCCAGTGGGTGAGAGACGAGAATGTGGAGTTTGATTCAGATGAGGAGGAGCCTACTTCGCTCGCCCCTCAACCTACAAGTCACTAAGACGACTATGGGAAACTgtgggaaaacacagatgaactTGTTCCACATTGGTACATTCAGAGGCCTCAGGCTGTTTGAAACAGCCGGAGCACCACGTGTAAAGACTTCATTAAAGAGATTTGTACTAATAATCAACCTTA
>XM_039805771.1
GGAGAACGGACCAAACTGCCGTAAGACCTCGTACGGCCCCCGCGGAGTAAGCCCCCGGCTGGCAAAGGTGCTCGCTCCCCGGACATAGTCGTGAAccacttagctagctagcgttaagTTGGCAACCGAACAACTGCGGGAAGGTGATGACAAGAGTCAGTTGAACATCCTGAAGAAACGGCGTGTGGCAGATCTTCTGTCTCATTATATTCCAGAAGATGAAGCAGCTCTTATGAAAAATGGAAGATACACTTGCCTTGTGTGCTCCTACCGTCCCGTGTTTGATACAGTTGATACGTTGACGGTCCACAGAAACGGGAAAAAGCATCTAGAAGGATTAAAAGCTTTCTATGGCAAGAAAGCACGGTTGAAGaatgaaatgacaaaaaggCACCATGAAAACTACATCCAGACTGAAGACACAAAACAGGAACCCTCGTGTTCAGCCCCTTTGCTGGCCCAAACACGGAAGCTTACACATCACGCTTTGTTGAAGACTGTACCATATAACAGCTGCCATACTAAAACCAGtACAAAATCTGGAGAAGGAGCCCGGAGAATCAGCTCAGATCCCAGTGACAACTCTTGCAGCGAAACAGCATCCGAACAAGAAAAAGCATGCCAAAAAACTAAAGTTTCAAACAGTTTATCACAAAGCACGTTTAATGGCTGCACAGCAGccgTTGAAGGGTCGCATCCGGACATTAAGGCCGAGGCCTCAGTGACACAGGAGGCAGAGCCCATAACAgcgcagaggaggagagagctgGAGCACTACCTCAAACTGAAAAGTGACGGGTGGTTGCCAGACCGAAGCGGCCAGTGGGTGAGAGACGAGAATGTGGAGTTTGATTCAGATGAGGAGGAGCCTACTTCGCTCGCCCCTCAACCTACAAGTCACTAAGACGACTATGGGAAACTgtgggaaaacacagatgaactTGTTCCACATTGGTACATTCAGAGGCCTCAGGCTGTTTGAAACAGCCGGAGCACCACGTGTAAAGACTTCATTAAAGAGATTTGTACTAATAATCAACCTTA
>XM_039805772.1
GGCCCCCGCGGAGTAAGCCCCCGGCTGGCAAAGGTGCTCGCTCCCCGGACATAGTCGTGAAccacttagctagctagcgttaagTTGGCAACCGAACAACTGCGGTGATGACAAGAGTCAGTTGAACATCCTGAAGAAACGGCGTGTGGCAGATCTTCTGTCTCATTATATTCCAGAAGATGAAGCAGCTCTTATGAAAAATGGAAGATACACTTGCCTTGTGTGCTCCTACCGTCCCGTGTTTGATACAGTTGATACGTTGACGGTCCACAGAAACGGGAAAAAGCATCTAGAAGGATTAAAAGCTTTCTATGGCAAGAAAGCACGGTTGAAGaatgaaatgacaaaaaggCACCATGAAAACTACATCCAGACTGAAGACACAAAACAGGAACCCTCGTGTTCAGCCCCTTTGCTGGCCCAAACACGGAAGCTTACACATCACGCTTTGTTGAAGACTGTACCATATAACAGCTGCCATACTAAAACCAGtACAAAATCTGGAGAAGGAGCCCGGAGAATCAGCTCAGATCCCAGTGACAACTCTTGCAGCGAAACAGCATCCGAACAAGAAAAAGCATGCCAAAAAACTAAAGTTTCAAACAGTTTATCACAAAGCACGTTTAATGGCTGCACAGCAGccgTTGAAGGGTCGCATCCGGACATTAAGGCCGAGGCCTCAGTGACACAGGAGGCAGAGCCCATAACAgcgcagaggaggagagagctgGAGCACTACCTCAAACTGAAAAGTGACGGGTGGTTGCCAGACCGAAGCGGCCAGTGGGTGAGAGACGAGAATGTGGAGTTTGATTCAGATGAGGAGGAGCCTACTTCGCTCGCCCCTCAACCTACAAGTCACTAAGACGACTATGGGAAACTgtgggaaaacacagatgaactTGTTCCACATTGGTACATTCAGAGGCCTCAGGCTGTTTGAAACAGCCGGAGCACCACGTGTAAAGACTTCATTAAAGAGATTTGTACTAATAATCAACCTTA

Function

NR:

description
sodium channel modifier 1 isoform X1

GO: NA

KEGG:

id description
K24827 SCNM1; sodium channel modifier 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805770.1 False 1027 mRNA 0.45 8 32906319 32911192
XM_039805771.1 True 1044 mRNA 0.48 9 32905361 32911192
XM_039805772.1 False 1005 mRNA 0.48 9 32905395 32911192

Neighbor

gene id symbol gene type direction distance location
tnfaip8l2b tnfaip8l2 coding upstream 5032 32892531 ~ 32900329 (+)
LOC120562193 LOC103388706 coding upstream 17011 32853357 ~ 32888350 (+)
LOC120562270 scap coding upstream 531174 32315022 ~ 32374187 (+)
elp6 elp6,LOC102790853 coding upstream 590448 32309084 ~ 32314913 (+)
cspg5a cspg5,LOC103364230 coding upstream 611659 32229003 ~ 32293702 (+)
LOC120562446 NA coding downstream 36119 32947311 ~ 32950710 (+)
hormad1 NA coding downstream 121047 33032239 ~ 33049137 (+)
onecutl LOC106524064,LOC104923936,LOC108243192 coding downstream 175998 33087190 ~ 33096138 (+)
lingo4b LOC104947071,LOC108243198 coding downstream 264717 33175909 ~ 33200642 (+)
si:ch211-113g11.6 LOC103362574,LOC103388694,LOC108243248 coding downstream 295515 33206707 ~ 33260917 (+)
G77867 NA non-coding upstream 83873 32821243 ~ 32821488 (+)
G77862 NA non-coding upstream 138853 32766271 ~ 32766508 (+)
G77776 NA non-coding upstream 451951 32453187 ~ 32453410 (+)
G77762 NA non-coding upstream 528448 32374697 ~ 32376913 (+)
G77764 NA non-coding upstream 536283 32360545 ~ 32369078 (+)
G77883 NA non-coding downstream 17142 32928334 ~ 32979901 (+)
LOC120563080 NA non-coding downstream 40785 32951977 ~ 32952703 (+)
G77887 LOC103369030 non-coding downstream 106329 33017521 ~ 33050500 (+)
G77890 NA non-coding downstream 110906 33022098 ~ 33029791 (+)
G77897 NA non-coding downstream 140288 33051480 ~ 33052859 (+)
LOC120561717 NA other upstream 483889 32405133 ~ 32421472 (+)
G77682 tbx20 other upstream 925452 31976318 ~ 31979909 (+)
G77447 NA other upstream 1769215 31134829 ~ 31136146 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other upstream 2173752 30687338 ~ 30731609 (+)
LOC120562443 NA other upstream 2544773 30351495 ~ 30360588 (+)
G77888 NA other downstream 189221 33100413 ~ 33101534 (+)
bmper bmper other downstream 914895 33826087 ~ 33879132 (+)
LOC120562157 NA other downstream 983168 33894360 ~ 33904285 (+)
sh3bp5b sh3bp5,LOC102783023 other downstream 1079350 33990542 ~ 34042648 (+)
G78200 NA other downstream 1618163 34529355 ~ 34544379 (+)

Expression


Co-expression Network