lysmd1



Basic Information


Item Value
gene id lysmd1
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 32902016 ~ 32905473 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039805773.1
cgctagctagctaagtggTTCACGACTATGTCCGGGGAGCGAGCACCTTTGCCAGCCGGGGGCTTACTCCGCGGGGGCCGTACGAGGTCTTACGGCAGTTTGGTCCGTTCTCCGCTCTCTCCGGTTCGCCAGCGACGCATTGAACACAACATTAAGCCAGGAGAAACACTACAGGGCTTGGCCCTAAAATATGGAGTGTCGATGGAGCAGATCAAAAGAGCGAACAGGCTGTACACCAATGACTCGATATTCCTGAAAAAGTCCCTGTTAATCCCTGTGCTGTCAGACTTGGACCACTGTAATAACGGGGTGGATTTGGTTGAAGAGAACAGTGAAGAAGACTGTGCCTCTGCTCAAAATGGGCACACGGGGATCTCCTCTGAGAGGAAGCAAAATGATGGCAAAGAAAGGGTGTCAGACCTTACTCCAGTGGATTTTTTGAAAAGGCTGGATGGCTTGATAAATCAGTCCAAACTGGCTGCTGTCAAAGGATGCCAGGAAGCAGAGCAAAGGGTTGCCGCCCTAGAAGCAGCGTGCACCAGCAGGACATCAGACTGTCGGCCGCTTACAAGGTCGCAAAGTGTCATTTTGTCTTCCagagtgcagcagcagcagcaggcatcACATGTGGCGGTACCCCTAACTATCACCAAACTCACTAAGAAACTGAGAGACCACGAAGATGAGATCTTCCAGCTGTGACATGTTGTTCTTGCTGTCGCACTCTTGATCATTAAAGAAACTTTCCCAGAAAGCCACATCGCATGGTTTGGCCTCCAGGATAATAGAGCATTATAGATCAAGTGATCCTGTTGCTGAATGGACTTAAAAGtattttcatatttgccatttaatgtagaccttttcttttaaaaggtttttgaaaatgaa

Function


NR:

description
lysM and putative peptidoglycan-binding domain-containing protein 1-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039805773.1 True 891 mRNA 0.48 3 32902016 32905473

Neighbor


gene id symbol gene type direction distance location
ptpn23a ptpn23 coding downstream 498594 32376916 ~ 32403422 (-)
LOC120562214 NA coding downstream 737500 32161017 ~ 32164516 (-)
LOC120562213 NA coding downstream 758738 32138778 ~ 32143278 (-)
LOC120562215 NA coding downstream 765110 32127422 ~ 32136906 (-)
ankmy2a ankmy2,LOC102794045 coding downstream 959252 31933067 ~ 31942764 (-)
tmod4 tmod4,LOC102789303 coding upstream 9847 32915320 ~ 32946228 (-)
mcl1b NA coding upstream 113232 33018705 ~ 33021075 (-)
LOC120562448 NA coding upstream 209744 33115217 ~ 33130559 (-)
ctsk ctsk,LOC107086845,LOC106920373,LOC103156711,LOC106949137,LOC103477640 coding upstream 228637 33134110 ~ 33153043 (-)
LOC120563172 NA coding upstream 390777 33296250 ~ 33299540 (-)
G77910 NA non-coding downstream 7226 32867146 ~ 32894790 (-)
LOC120562114 NA non-coding downstream 83470 32784245 ~ 32818546 (-)
G77850 NA non-coding downstream 213385 32688412 ~ 32688631 (-)
G77847 NA non-coding downstream 435286 32466172 ~ 32466730 (-)
G77829 NA non-coding downstream 497378 32404292 ~ 32404638 (-)
G77949 NA non-coding upstream 194343 33099816 ~ 33101537 (-)
G77959 NA non-coding upstream 226770 33132243 ~ 33132533 (-)
G77984 s100a1,LOC105028680,LOC106605324,LOC107587912,LOC107689908,LOC107663298,LOC107598020,LOC107717776 non-coding upstream 379440 33284913 ~ 33286592 (-)
G77994 NA non-coding upstream 554549 33460022 ~ 33460244 (-)
G78064 LOC103362578,LOC107379244 non-coding upstream 579835 33485308 ~ 33486895 (-)
sema6e sema6c,LOC103360390,LOC104932808,LOC100704625 other downstream 257047 32480644 ~ 32644969 (-)
LOC120561540 LOC104957162,LOC106526711,LOC102237165 other downstream 467149 32425365 ~ 32434867 (-)
tbx20 tbx20 other downstream 911651 31976484 ~ 31990365 (-)
LOC120562592 dgkb,LOC102796570 other downstream 1275135 31612436 ~ 31626881 (-)
G77573 NA other downstream 1382980 31516455 ~ 31519036 (-)
ensab ensa,LOC103369031,LOC100695493,LOC101487776,LOC102787866,LOC102291346,LOC102199757,LOC108243249 other upstream 116625 33022098 ~ 33032895 (-)
LOC120561932 NA other upstream 685048 33590521 ~ 33602948 (-)
LOC120561752 NA other upstream 1189778 34095251 ~ 34097590 (-)
G78245 NA other upstream 1190170 34095643 ~ 34146296 (-)
LOC120561744 NA other upstream 1224065 34129538 ~ 34132432 (-)

Expression



Co-expression Network