ephb6 (ephb6,LOC102800023,LOC104960407)


Basic Information

Item Value
gene id ephb6
gene name ephb6,LOC102800023,LOC104960407
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23512555 ~ 23556483 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805777.1
ACACAAACTCACTCTATCTCCTTCTTTCatgctctctccctccctctctttctgtcagTGTCATTCTATAGTGGAGATGTGgagtgtctttctgtctctctgtctgttttttcaGCCCAATTCAGCTGAGGAAGtgATGCTGCTGGACACAACAGAGTCTACCTCAGAGCTGGGCTGGACCACCTATCCAGACACGGGGtggGATGAGGTCAGTGTCCTGGACGACCGGGGGAAGCTCATACGAACCTTCGAGGTCTGTAATGTCAACCAAAATCCCCGTCTGCAAGACAACTGGTTGGCTACGCCCTTCCTGTACCGGCACTCTGCTCCACGGGTGTTTGTCACACTGCGTTTCTCAGTGCGTGACTGCGCCAGCCTGCGATCGCCGTCACCCACCTGCCGAGAGACACTCACTCTGTACTACAAACAGGCCGACTCCCAGAGAGAGCTGGAGAGGACCTGGGCAGCTGAGCCGTCCAATGGAGAGAAGGAGACCAGGGAGGGCTGGGTGAAGATCGACACTATCGCGGCTGATAAGAGTTTCTCCAAGGTGGAGCCCAGTTCACCTCACCAGTATCAACCCAACAGATACAGCCGAATCAACATCAAGACACGCAGCTTTGCCCCGCTCACACGCAACGGATTCGTCCTGGCCATTGTCGACAGTGGAGCTTGTGTTTCCCTCATGGGTGTGTCAGTCTTCTACCGGCGCTGTCCAGCCACCAGCATGTACTTGGCATCCTACCCGGCAACTCCCTCAGGGGCCGAGCCGACTGCCTTAGTTCCCCTGAGCGGGACATGTGTTCCCCACAGTAAAGCACAGGGAGGCACGCCCCCTCGCATGCACTGCAATGCTGAAGGGGAGTGGATGGTTCCTGTAGGAGGATGTGTCTGTGATGAAGGCTATGAGCCAAACCTAAATGGATCTGCCTGCTTGGcTTGTCCGGTGGGCTACTTCAAGTCCGTTGCGGGCTCCATTCCCTGCTCGGTGTGTCCCTCCAACAGCAGAACCAGCCAGGAGGGAtcgagtgtgtgtgaatgtcgcAGCGGATTTTACCGGGCAGCCAATGATGCCAACTCTTCTGCATGCACAACTCCTCCATCTGCTCCGGTCTCTCCGTCCTGGGAGTATGAGAGCGGCGATGGCGGGGTGTCCATAAGGTGGCGCCCTCCAGTGGAAATGGGAGGCCGCAGCGAAGTGTGGTATGGGGTGGTGTGTCGCATCTGCCCCTCAGCCACCTTTACCAACCCGGCGGCGTGCTCCTGGTGTGGAGAGGGCGTCACCTTCAGCCCTGCCCAGACAAACCTGAAACAAACCAAGGTCACCCTCAACAACCTGCTGACCAGAGTCACTTATCTCATACAGGTGCAAGCCATGAATGAGGTGTCAGCTTTGAGTCCTTTTCCAGCTCGATACACAAGCATCAATTTCACTACGAGCCAGTCAGTTCCCAGCACAGTTCCTATGATGCACCAGCTGAGTAGAGCCCCAGACTCCATCACTCTCTCGTGGCCTCAGCCCGACAGGCCCAATGGAGACATCCTGGAGTACCAGCTTAGATACTATGACAAGGGTTCAGATGTGGACAGTGCAGCGAGTGTGTACAGTGAGACCAACACGGTGACCGTCAACTCTCTGATCCCCGGCTCCATCTACGCCTTCCAGATCAGAGCTCGGAATGAACGGGGCTACGGCCCCTACAGCAACACCATCTACTTCACCACGCTGCCTCTGGAGGAACATTCACAGCAGATCCAGAATCGACTTCCTCTGCTGGTTGGGTCAGTGATGGGCGGTGCAGCATTTCTCCTGGTGGTGGCAGCGATTGTGGTCGTGGTGGTATTTCGCAGTAAGAGGAGGGAGAGTCCGTACAGCGACAGACTACAGAGGTACATCAGTAACCGAGGTGGAGTTAAGTATTATGTGGACCCATCCACATATGAGGACCCCAGTGAGGCTGTCAAAGAGTTTGCCCGTGAGATAGATCCCACTCATCTTAAGATTGAGGAGGTGATTGGTGCAGcCCAGTTTGGGGAGGTTTCTCGGGGCCGCTACCGTCCGCTGGGTCGAAGGGAGGTGCTGGTAGCCGTCAAGACTCTACGCTGGGGGGCGTCTGACAGAGAGAAGGGCATGTTCCTCAGTGAAGCAGGGGTCATGGGACAGTTTGACCACCCCAACGTACTGAAGTTGGAGGGTGTGATCACTTGTACCCCCCCAGAGAGGATCATCACTGAGTTCATGGAGAACGGGCCCTTGGACGCCTTCCTCCGGGAGAACGAGGGCCAGTTCAGTGTCCTCCAGCTTATCGGGATGCTCAGAGGAGTTGGTGCAGGGATGCGTTACCTCTCCGAGAGAAACTTTGTCCACCGGGACCTGGCGGCTAGGAACGTGTTGGTCAACTCCAACCTGGTCTGTAAAGTGTCTGACTTTGGCCTGTCCCGGCTCATGAGGGGCCTGGACCACAACATACCTACGTACACTGCCTCACTGGGCAGTAAGATTCCTGTGAGGTGGACGGCACCAGAAGCCTTTCAGCATCGCAAGTTCAGCTCAGCGAGTGACGCCTGGAGCTTCGGCATACTTATGTGGGAAGTGATGTCATATGGAGAGCGTCCATATTGGGACATGAGCAATCAAGAAGTGATGAAGGCAGTCGCAGACCAGTATCGTCTCCCTGCCCCCCACAACTGCCCCTCCGCCCTCCACTCTCTGATGCTTCAGTGTTGGCAGGCTGATCGAGGGGACCGGCCAGGCTTCGACACACTCCTGTCCTCCTTGGATCGGCTCATCAGGCACCCTGCCTCCCTCAAGGTGGAGCCAACTCGAAGCTGCTCTCAACCCCTGCTGAGCCCCACGCCCACAGACTTAACGTCAGTGGCAACAGTCAGTGATTGGCTGAAGGCGCTGAGGATGGAGCGATATCAGGATGAGTTTGATCAGGCAAACCTGGACACATTAGACAGAGTCAGCATGCTCAACATGGATGATGTCCAGAATCTCGGGGTGAACCTGCTGGGGCACCAGAGGAAGATCGTCAGTGCAGCCCAGCAGCTCAGAGCCTATCTGACGCAGGGGCAGGTGGAGGTGTGAAATCCACCCACAGAACAACCCGTGCCACGGATTTCTGTGGTTTTCACATCCCTCTGCTTGTTGTGTCTGgtttcattcattttgatggAGCACATTTTAagccaaaacaaaaagagaatcagctttttttttaggaaaagcATTGAGTGCCACTCTGTGTATTCTTCTAAACTTCAACCGACACTACAACCAGAAGGGGTGAAAAAGAGGATCCGACTTCCTGCCAGTCACTCACGTCACGACTAATAACAGAGGAGGGATGCACTATGGGAGCTGCATTTCAGGTCAAAGTGAAGTTAGGGTGTTGCTGAGGAGAAGGAGGACTTTAAAGATTCCTCAATGTTTTTCACTAGATTTCACTTTATTGTTGTCTGCCTTCTTCTCTCCTCACCAATCTCAATCCTACCTCTCACCTTCTCTTCCCACTACTGTCCCCCCTAAAACTTTTCAATTTCCCCACCCTCATTggtacaaaataaactaaaaaaatgttttttgttaacATACTGTACTTATGGAGATCTCTCCACACAAAGAATTGCGTGAAGACAATCAAagcttttttcaaatttttttttttctgttgagtTGTTTGTAAAGTTGTATCACTTCCTCTCCTTAAAACACCAAATGCTGAGAAACTGttagcaaaaaaaagaaaacagtgaaCTACCTAGCAGCCCATGGTTTGCCTTATAAGGTATTACCATTAGCGTTGAGAAAAATTTACAGTTTGTTCAATTGTTCCAACAAAATAATATAAACCACCAGACCAAAATCAGTACTGCAAACCCCAAGGTTAGATATGAATCACTGCCATGacattgtaaaaacaaaaacaaaacatgtgtTTCCCTCTTTTAAAGACATATCCAGGGCTTGAGAGCAACTCAGTTTGTAaaactcactctcactctcatgTCTCTCAGCGACAACAGAGCTCATGTACTGTAAAACTACAAACTTCACCTCAGCTGCAAACACAAACGTCCATCTGCGATGAAGACAGAACTGAACAGCACCCACCTTTGTGTGTACTTTTCACActtcaccttttttttgttaaattgcTAGAGTAAAGACACTGAGTCATTGAAGCgttgtgaatgtgtgaaatgGGAAAGACGGACAAAATCGGATCTGATTTACACTTGAAGGAAGGAGGCGAAATGCTTTGTAAGTATGTACCTGTGTGTCTGGGCTGTACAtgacgctgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgcgcgcgtgcgtgcacGTACATGtggtgcgtgtgcatgtgtgtgtttgagacaaGTGTGTCAGGCTGCACACATTAGCTGTGTTTACTTGTATGAGTCTTCACCAATATTCCATAATTGTGcaaatttgtaaaataaatgatatgattttatttaa

Function

symbol description
ephb6 Predicted to enable transmembrane-ephrin receptor activity. Predicted to be involved in axon guidance; positive regulation of kinase activity; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Orthologous to human EPHB6 (EPH receptor B6).

NR:

description
PREDICTED: ephrin type-B receptor 5-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805777.1 True 4492 mRNA 0.51 19 23512555 23556483

Neighbor

gene id symbol gene type direction distance location
slc2a3b LOC104960409,LOC101465952,LOC102775578,LOC101063282 coding upstream 3890 23498789 ~ 23508665 (+)
mfap5 mfap5,LOC104934636,LOC104960418,LOC107082259,LOC105934952 coding upstream 75511 23433649 ~ 23437044 (+)
sbk3 sbk2,LOC100700842,LOC101487833,LOC102212418,LOC102777020 coding upstream 85910 23420347 ~ 23426645 (+)
foxj2 NA coding upstream 110845 23395934 ~ 23401710 (+)
isoc2 isoc2 coding upstream 116884 23392999 ~ 23395671 (+)
m6pr NA coding downstream 37378 23593861 ~ 23600002 (+)
phc1 phc1 coding downstream 44619 23601102 ~ 23608496 (+)
clcn1b clcn1,LOC102795222 coding downstream 96085 23652568 ~ 23684905 (+)
zyx zyx,LOC102794270 coding downstream 163378 23719861 ~ 23736431 (+)
kel NA coding downstream 180495 23736978 ~ 23742258 (+)
G75301 NA non-coding upstream 18078 23494213 ~ 23494477 (+)
G75227 NA non-coding upstream 71329 23437096 ~ 23441226 (+)
G75199 LOC103372680 non-coding upstream 158380 23351145 ~ 23354175 (+)
G75197 NA non-coding upstream 161788 23346840 ~ 23350767 (+)
G75196 u2af2 non-coding upstream 169878 23339846 ~ 23342677 (+)
LOC120561968 NA non-coding downstream 74933 23631416 ~ 23633834 (+)
G75427 NA non-coding downstream 326694 23883177 ~ 23884631 (+)
G75483 ptpn6 non-coding downstream 387010 23943493 ~ 23948403 (+)
G75493 NA non-coding downstream 415844 23972327 ~ 23975734 (+)
G75517 NA non-coding downstream 471400 24027883 ~ 24031339 (+)
LOC120562612 LOC103367657,LOC105025867,LOC103136704 other upstream 18521 23491125 ~ 23494034 (+)
LOC120562293 LOC103360151,LOC102310947,LOC102785150 other upstream 429408 23070587 ~ 23083147 (+)
cnot3a cnot3 other upstream 601035 22900089 ~ 22911520 (+)
myh14 NA other upstream 692502 22785578 ~ 22820053 (+)
LOC120562539 LOC102295960,LOC100711672,LOC102209551,LOC101487210,LOC102786116 other upstream 807139 22689070 ~ 22705416 (+)
trpv6 LOC104929027,LOC104960406,LOC103388006,LOC107082237 other downstream 4365 23560848 ~ 23571243 (+)
casp2 casp2,LOC102795506,LOC103369458 other downstream 85072 23641555 ~ 23651496 (+)
LOC120563204 NA other downstream 211750 23768233 ~ 23813408 (+)
LOC120563047 vamp1,LOC104928996 other downstream 317426 23873909 ~ 23879415 (+)
atn1 atn1 other downstream 470432 24026915 ~ 24039427 (+)

Expression


Co-expression Network