rundc3b (rundc3b)


Basic Information

Item Value
gene id rundc3b
gene name rundc3b
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21467069 ~ 21478945 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805795.1
CGCAGGTTTGTGTTGCCCCTCCTTCAGCTGAGCATCCTGTGTTGCTCCGGTGTGACGGAGACAGCTACCCTGGTGCAGAGGGAGCGGAGAGGGGACTACGCACCTCTTCCGCCCGCAGCCTAGGCTCGGACACGGGCCGGGGATGGCTTCGCTCGGCGTGGGGCTGCATCTCATCCGTAAGAGGGGAGCAGGCAGGAGTGCCGCGGTTGAGAGGAGGAATCTTCTCACGGTGTGCAGGTTTTCAGTGAAGACTCTACTAGACCGCTCCTGTTTTGAGACAATAGATGACACATCTCCAGACTTTGTTAACTTTGTTTCCATCCTGGAGCACATTCTCAGTCATCGACTCAAAGGTCAGACCACTTGGTTTGGCTATGAGAGTCCTCGAAGTTTCTGGGATTACATAAAAGCTGCCTGCGGTAAAGTCCCTCATAATTGCATCCGAAGCATCGAGAGCATGGAGAATGTGCGAGCGTCCAGAGCTAAAGGCAGGGCATGGATCAGAGTGGTCCTGATGGAGAAAAGATTATCAGAATACATCTCATCTGCACTGAGGGACTTCAAAACCACCAGGAGGTTTTACGAGGACGGAGCGATCATGCTGGGAGAGGAGGCGGGGCTGTTGGCAGACACACTCATCGGACTCAACACCATTGACTTCAGCTTCTGTCTGAAAGGAGAGGGTCTGGACGGCAGCTGTCCCGCCGTGATCGACTACACACCTTACCTCAAGTTCATTCAGAATGCAGACAGCATCAGCAGCGACGAGGAGGAGATGAGGACTATGGGGAGCAGCGGCAGTGAGAGCAGCAGCCCCGACAAAATGGCCACGGCCGCCTCCATCTTCACCGAGCAGAGCAACTTGGTCAGCAAGTGCAAACGCTTTGAGCAGAAGTACCGAATGGCACTGGAGCAGAagGGTTACCTGGAAGAGCTGGTCCGTCTACGAGAAGCCCAGCTGTCAGAGGCTGCGTCTCATAACAAAGCTCTTCAGCAGAGCCTAGCAGACACACACCTCTCCCACAcactagagaaagaacagcttGAGTACATCATACTGGAACTACAGGACCAACTGACGGTGATGAAGAACAATGATTTGCGGTCCAGACAAGAGTTGACAGCCcatctgaccaatcagtggcCATCTCCCGTCGCCTTGGATGCCAACGCTGTTGCCTTGGACACGCTGCTGTACAGGAAGACCATGGGACAGTGGGAAGAGAAGAGTTTCCAGAGTCTGGAGCAGCTGTCTGCAGACATGAGTCTCTCCCAGACGTCTCTTGgaccgacacacacactgagtgtGGAGGCCAGGCCGACCGGCACACACTGGCCCCACCAAGGTAAAGAGGAGACTCCTTCTCTAAGAGGTCTGTGTGGCTCCCTGACCTCAGTCGCCAGCTACAAGTCTTTGGCCAGCCTGAAGTCCAGCGAGTGCTTGGCCAGTCCTGCAACAGAGATCAGCAGCCCAGGCTTCACTCCTTCATAGGGAAcggagagcaaaaaaaaaaaaaaaagcagatctCCACCAGGGCCAGACAATCCAGGAACTTTCTTAATGTAGGTTATATTGATTTGTAGACTTATATGTTCTGTATATTGAGCCCAGAGCTTTAACAGATAGTCAGGTTTTTAAGTTGAGGATCTGGTGTAGCATGTTCTTTAAACTCAAGAGCAGCTCCATCAGACCCGAATAATGTCTTATTAATGATCCATTCAGCTGAAACAACCTCCTGCTGTTACTTCACaagtatgtttttgtttatgttttgttggaGTTTATCTGTGGagcatctgttttttttcttttatatgaaataaattaaaatgacagacAGCTGGTGTAAGAATGGAAAAGTTTACCAGGAGATGATAGCATGCTGAAAATACAGATCAGAGTTCtgagaaaacacaaaatactgAGAGCCTCAATCGTTCGTCTCGTCACTACGAATCATTTCCTGCAGTTGACAGGGTCTTTCATTATCTTGTCCTGTTACTGCTGCCACTGAATGTGTATAATTGTTTTTTCATATAGTAGTCTTTTTGATTTATGATGAATGCACCTCCACTTTTATCAGCTTATATCAGCAAAATTTTGCATAATGCCATCTTACATTGTATTCTTATGTGTAAATGTTCTTGaacttttctgtttttatttttgttttattttattagggtTATGTTGTCAATGTTGTGCATAATGCAGTGTCACATGGTTTTGTTCTCAGGTAATGATCCCTGCGATTAATATTCCCCCTCCACTTCTGGGTTTACTTTAAAGTTCAGCTTTATCAGATACAGACTCCTGTTATTATTCCCTTTAATAAATCAAATGCAGTATTTTAATGGGTAGTTTTACCACAAAATAGACAAAATTcctaaaattataaaataaaaattcagaataatgACCTGTGTCAGAACTCAGTAAAGAATATATTGCAACAGATATTTGTGAGAATGAGAAAcaagtgtatttaaaaaaatatcagttaaatgtaatttgtattaTTCGTGTGTAGCCGTGTACCTCAACACTGTACTCGTGACTTTGCCTTTAGCTCATTCTAGCAGTCATTTGCACAGACCTGCAGCAGATGTTTGATTGGATTTATTTGCCTTTTTATCCTTCATTTTGAATAAACTGCACTTACTCAAACAGTGA

Function

symbol description
rundc3b Is expressed in brain; gut; habenula; and yolk syncytial layer. Orthologous to human RUNDC3B (RUN domain containing 3B).

NR:

description
PREDICTED: RUN domain-containing protein 3B

GO: NA

KEGG:

id description
K24787 RUNDC3; RUN domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805795.1 True 2674 mRNA 0.46 11 21467069 21478945

Neighbor

gene id symbol gene type direction distance location
LOC120563194 NA coding upstream 5858 21458499 ~ 21461211 (+)
nmt2 nmt2 coding upstream 70543 21389889 ~ 21396526 (+)
fam171a1 fam171a1 coding upstream 79763 21361594 ~ 21387306 (+)
l3mbtl1b l3mbtl3 coding upstream 137622 21315069 ~ 21329447 (+)
sgk2b NA coding upstream 155003 21308878 ~ 21312066 (+)
dbf4 NA coding downstream 6104 21485049 ~ 21491551 (+)
adam22 adam22 coding downstream 14469 21493414 ~ 21556018 (+)
osgin2 osgin2,LOC102787809 coding downstream 82843 21561788 ~ 21570071 (+)
si:dkey-87o1.2 NA coding downstream 116126 21595071 ~ 21597057 (+)
rorc rorc,LOC102786611 coding downstream 129514 21608459 ~ 21627308 (+)
G74288 NA non-coding upstream 174689 21291042 ~ 21292380 (+)
G74287 NA non-coding upstream 176755 21289553 ~ 21290314 (+)
G74286 NA non-coding upstream 177694 21289171 ~ 21289375 (+)
G74274 kiaa1429,LOC104941925 non-coding upstream 223502 21243229 ~ 21243567 (+)
G74233 NA non-coding upstream 314557 21150389 ~ 21152512 (+)
LOC120562851 NA non-coding downstream 246003 21724948 ~ 21725705 (+)
G74673 NA non-coding downstream 557333 22036278 ~ 22036659 (+)
G74729 NA non-coding downstream 636671 22115616 ~ 22116026 (+)
G74732 NA non-coding downstream 640793 22119738 ~ 22121346 (+)
G74737 NA non-coding downstream 650707 22129652 ~ 22129914 (+)
crot acbd7,crot,LOC102783617,LOC101470173 other upstream 51175 21403035 ~ 21415894 (+)
LOC120563169 NA other upstream 130404 21331412 ~ 21336665 (+)
sec61b sec61b,LOC102796100 other upstream 455655 21008013 ~ 21011414 (+)
glipr2l glipr2 other upstream 861904 20600323 ~ 20605165 (+)
gra NA other upstream 1141108 20322330 ~ 20325961 (+)
them4 LOC106592246,LOC104959154,LOC101466288,LOC107096308,LOC100702377,LOC105029233,LOC106575342 other downstream 120089 21599034 ~ 21603458 (+)
G74633 tuft1,LOC102781808 other downstream 290603 21769548 ~ 21770286 (+)
slc50a1 slc50a1 other downstream 604724 22083669 ~ 22091963 (+)
LOC120561539 NA other downstream 653633 22132578 ~ 22136234 (+)
LOC120561537 NA other downstream 658602 22137547 ~ 22139223 (+)

Expression


Co-expression Network