LOC120562211 (ube2e1,LOC106534515,LOC101480162,LOC103357960,LOC100705406)


Basic Information

Item Value
gene id LOC120562211
gene name ube2e1,LOC106534515,LOC101480162,LOC103357960,LOC100705406
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 30951233 ~ 30965417 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805800.1
AGTAGGACCGGGGCCGTACAGCCCACTGCAGCCGCGGTAGGCTACTTCCGTTCCGCAGAGAGCGACAGGCACCAGCCAGCCTAGACTGTGGCGGAGGTCCAGACACAATAGACTGGGTTCCGGCTCTTCTCCAATCCAAACCGGTATGTCGGATGAGGATTCCCGTGCAAGCACCAGCTCTTCTTCATCGCCGCCTTCCTCCAGCCAAAacagacagagggacacacTTTGCAAAAAGAAACGGGAGAGCAAAGCCAGCATGAGCAAGACCTCCAAGCTGCTTTCCACCAGCGccaaaaggatTCAGAAAGAGCTGGCTGATATTACACTGGACCCTCCGCCAAACTGCAGtGCTGGCCCTAAAGGAGATAACATCTATGAGTGGAGGTCGACCATCCTGGGACCACCGGGCTCCGTGTACGAGGGAGGCGTCTTCTTCCTGGACATCGCCTTCACACCCGACTACCCCTTCAAACCCCCCAAGgtaACTTTTCGTACGAGGATCTATCACTGCAACATCAACAGTCAGGGGGTGATCTGTCTGGACATCCTGAAGGACAACTGGAGCCCCGCCCTCACCATCTCCAAGGTGCTGCTGTCCATCTGCTCCCTGCTCACAGACTGTAACCCAGCCGACCCCCTGGTGGGAAGCATCGCCACCCAGTACACGACTAACAGAGTGGAACATGACCGAACAGCCAAACAGTGGACGAAACGATACGCCACATAAACCCACAGAGGACGgcagtggggggaggaggaggaggaggggtggggggctcCGGGTGGTTTGTGTTGGGCGGGTTATTTCTATCTCAGATTTTTAGTACTTTATTGTCTGGTATATTTTTTGCTTCCTGATTAAGTTATCTTCACAAATATGGTAATAAAGGAACACAATGGAAAGGAA

Function

symbol description
ube2e1 Orthologous to human UBE2E1 (ubiquitin conjugating enzyme E2 E1).

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 E1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K20217 UBE2E; ubiquitin-conjugating enzyme E2 E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805800.1 True 910 mRNA 0.54 6 30951233 30965417

Neighbor

gene id symbol gene type direction distance location
LOC120562210 LOC103357958,LOC107379173,LOC102233395,LOC103388353,LOC100705137,LOC103477709,LOC106523089 coding upstream 2045 30909030 ~ 30949188 (+)
si:dkey-82o10.4 NA coding upstream 237842 30705031 ~ 30713391 (+)
LOC120562225 LOC103356864 coding upstream 560801 30362707 ~ 30390432 (+)
LOC120561719 vmo1 coding upstream 727709 30218997 ~ 30223524 (+)
LOC120562442 NA coding upstream 734538 30212639 ~ 30216695 (+)
nr1d2a LOC103375162 coding downstream 3164 30968581 ~ 30976242 (+)
LOC120562709 NA coding downstream 23346 30988763 ~ 31008397 (+)
LOC120561533 rarb,LOC102205684,LOC101478141 coding downstream 59567 31024984 ~ 31044407 (+)
sept7b LOC103370332,LOC107379178 coding downstream 100348 31065765 ~ 31084517 (+)
si:dkey-256h2.1 NA coding downstream 149332 31114749 ~ 31131084 (+)
G77260 NA non-coding upstream 548529 30398276 ~ 30402704 (+)
LOC120562235 NA non-coding upstream 732630 30216748 ~ 30218603 (+)
LOC120562092 NA non-coding upstream 830137 30118008 ~ 30121096 (+)
G77198 LOC103388947,LOC102796900,LOC101464846 non-coding upstream 1052480 29894234 ~ 29898753 (+)
G77172 NA non-coding upstream 1137692 29812931 ~ 29813541 (+)
G77399 NA non-coding downstream 11324 30976741 ~ 30977081 (+)
LOC120562708 NA non-coding downstream 12910 30978327 ~ 30988733 (+)
LOC120562710 NA non-coding downstream 49716 31015133 ~ 31016447 (+)
G77555 NA non-coding downstream 548719 31514136 ~ 31514561 (+)
G77554 NA non-coding downstream 552346 31517763 ~ 31518618 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other upstream 219624 30687338 ~ 30731609 (+)
LOC120562443 NA other upstream 590645 30351495 ~ 30360588 (+)
G77239 NA other upstream 826595 30123702 ~ 30124638 (+)
rgl2 LOC101463702,LOC100700084,LOC102303531,LOC102796597 other upstream 841688 30073937 ~ 30109545 (+)
G77028 LOC104942601 other upstream 1538820 29404008 ~ 29412413 (+)
G77447 NA other downstream 169412 31134829 ~ 31136146 (+)
G77682 tbx20 other downstream 1010901 31976318 ~ 31979909 (+)
LOC120561717 NA other downstream 1439716 32405133 ~ 32421472 (+)
G77888 NA other downstream 2134996 33100413 ~ 33101534 (+)
bmper bmper other downstream 2860670 33826087 ~ 33879132 (+)

Expression


Co-expression Network