pkdc (LOC102076377,LOC101468599,LOC102793757,LOC102209191,LOC102303972)


Basic Information

Item Value
gene id pkdc
gene name LOC102076377,LOC101468599,LOC102793757,LOC102209191,LOC102303972
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 31943411 ~ 31947773 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805808.1
CCAAACAGACCATTGACATACAGACGGCTGTGGAGAATACTTCCTGGTATGAAGCtgatagggttagggttagcataTTTATCTTTCTGTAGTGTTTTGGCATATTTGAGACAGTTATTGTTACATACTTTCAATTTGTATTTATATCGTTTGGGCTTAAATTACATTTCATGTAGCATCTGCACTGAATTTGTGAGAAGGAAACAGCAGAAATAAAGCctatttttttgttgtctgGATGCTCAAGCTTCATCATTTGTGAGTAAGCTCTGACTGGAAATGAAACAGGAGCACCAGGATCTCATCCTTCAGGCGTGCGGTGCTTCGTCCCTGCGTGTTGGTGCAAAGATCCAGACACTGTGGAGTGGTTATGGGGAGATAGTTAGGCTGCACCTGGAGGGCTCTGAGCGGCCATCAGTGGTCGTCAAACATGTCAAGTTTCCAGAGGAGGCCGAGCATCCCGGAGGCTGGAACACAGATCGCTCCCACACACGTAAAGTGAGATCCTACCAGGTGGAGACACACTGGTACCAGAACTAttccaccaatcagagctgCCGGACCCCCGCCTGTCTGGCCGCCTGTTCCTATGGAGACGAGATGCTGATCGTGCTGGAGGATCTGGATGTGGCTGGTTATGATCAGAGGAGgACCAGCGTGAAGGACCGAGAAATAAAGGCTTGCCTCAGCTGGCTTGCCCACTTCCACGCTCTCTTCCTGGGTGTGGCACCAGAGGGCCTGTGGCCTGTCGGCACCTACTGGCACCTGGAGACCCGGCCAGACGAGCTGGAGGCCATGGACCACGCCGAGCTCAAAGTGGCGGCTGGTGACATTGACAAGATACTCAGCGAATGTCGCTTTAAGACCGTCGTTCACGGAGACGCCAAGTTAGCCAACTTCTGTTTTTCCCAGAGTGGACGGGATGTGGCAGCTGTAGACTTCCAGTATGTTGGAGGGGGCTGTGGGATGAAAGATGTTGTGTATTTTTTAGGAAGCTGCATGGAGGAGAGGGAGTGTGAAAAGAGGGTGCCAGGCCTGCTGGACTACTATTTCACAGAATTAAATCAATCTGTGAAAAAAGATGTGGACTTTGCTGCCCTGGAGAAAGAGTGGAGGGAGATGTTTGCATTTGCCTGGACAGATTTTCATCGCTTTCTGCTGGGATGGATGCCTGGGCACTGGAAGATCAACCGGTACAGTAAACAGTTGACCAAGGAGGTACTCCGCAAACTGAAACTGTAATCCGCATCAAAAATGTTTAACTTCAGACAACCAGAGAACTGAACATGTGGCTGGAAGGTGACCAGTTTCACCCTGGAAAAAACGAATCACTCACAAACACCTGTGTACAGTGAAGCATGCCTATCGAAACAAttctacttaaataaaagtttgTGAAAAATG
>XM_039805809.1
CCAAACAGACCATTGACATACAGACGGCTGTGGAGAATACTTCCTGGTATGAAGCtgatagggttagggttagcataTTTATCTTTCTGTAGTGTTTTGGCATATTTGAGACAGTTATTGTTACATACTTTCAATTTGTATTTATATCGTTTGGGCTTAAATTACATTTCATGTAGCATCTGCACTGAATTTGTGAGAAGGAAACAGCAGAAATAAAGCctatttttttgttgtctgGATGCTCAAGCTTCATCATTTCTCTGACTGGAAATGAAACAGGAGCACCAGGATCTCATCCTTCAGGCGTGCGGTGCTTCGTCCCTGCGTGTTGGTGCAAAGATCCAGACACTGTGGAGTGGTTATGGGGAGATAGTTAGGCTGCACCTGGAGGGCTCTGAGCGGCCATCAGTGGTCGTCAAACATGTCAAGTTTCCAGAGGAGGCCGAGCATCCCGGAGGCTGGAACACAGATCGCTCCCACACACGTAAAGTGAGATCCTACCAGGTGGAGACACACTGGTACCAGAACTAttccaccaatcagagctgCCGGACCCCCGCCTGTCTGGCCGCCTGTTCCTATGGAGACGAGATGCTGATCGTGCTGGAGGATCTGGATGTGGCTGGTTATGATCAGAGGAGgACCAGCGTGAAGGACCGAGAAATAAAGGCTTGCCTCAGCTGGCTTGCCCACTTCCACGCTCTCTTCCTGGGTGTGGCACCAGAGGGCCTGTGGCCTGTCGGCACCTACTGGCACCTGGAGACCCGGCCAGACGAGCTGGAGGCCATGGACCACGCCGAGCTCAAAGTGGCGGCTGGTGACATTGACAAGATACTCAGCGAATGTCGCTTTAAGACCGTCGTTCACGGAGACGCCAAGTTAGCCAACTTCTGTTTTTCCCAGAGTGGACGGGATGTGGCAGCTGTAGACTTCCAGTATGTTGGAGGGGGCTGTGGGATGAAAGATGTTGTGTATTTTTTAGGAAGCTGCATGGAGGAGAGGGAGTGTGAAAAGAGGGTGCCAGGCCTGCTGGACTACTATTTCACAGAATTAAATCAATCTGTGAAAAAAGATGTGGACTTTGCTGCCCTGGAGAAAGAGTGGAGGGAGATGTTTGCATTTGCCTGGACAGATTTTCATCGCTTTCTGCTGGGATGGATGCCTGGGCACTGGAAGATCAACCGGTACAGTAAACAGTTGACCAAGGAGGTACTCCGCAAACTGAAACTGTAATCCGCATCAAAAATGTTTAACTTCAGACAACCAGAGAACTGAACATGTGGCTGGAAGGTGACCAGTTTCACCCTGGAAAAAACGAATCACTCACAAACACCTGTGTACAGTGAAGCATGCCTATCGAAACAAttctacttaaataaaagtttgTGAAAAATG

Function

NR:

description
uncharacterized protein LOC110486949

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805808.1 True 1404 mRNA 0.49 3 31943411 31947773
XM_039805809.1 False 1395 mRNA 0.49 3 31943411 31947773

Neighbor

gene id symbol gene type direction distance location
LOC120562640 NA coding upstream 11364 31917746 ~ 31932047 (+)
arl4aa arl4a,LOC103374731,LOC104928894 coding upstream 438749 31500830 ~ 31504662 (+)
si:dkey-30e9.6 NA coding upstream 444925 31497043 ~ 31498486 (+)
vwde wif1 coding upstream 493960 31444788 ~ 31449451 (+)
tmem106ba tmem106b,LOC103368608 coding upstream 508354 31426759 ~ 31435057 (+)
herpud2 LOC103361314 coding downstream 1849 31949622 ~ 31959398 (+)
dpy19l1l dpy19l1,LOC102792675 coding downstream 142385 32090158 ~ 32124377 (+)
LOC120562212 NA coding downstream 197619 32145392 ~ 32149331 (+)
smarcc1a smarcc1 coding downstream 218546 32166319 ~ 32193048 (+)
LOC120562445 NA coding downstream 256981 32204754 ~ 32212177 (+)
G77669 NA non-coding upstream 617 31942035 ~ 31942794 (+)
G77666 NA non-coding upstream 8349 31933085 ~ 31935062 (+)
G77593 NA non-coding upstream 320245 31622827 ~ 31623166 (+)
G77592 NA non-coding upstream 329096 31612481 ~ 31614315 (+)
G77591 NA non-coding upstream 332100 31611058 ~ 31611311 (+)
G77683 NA non-coding downstream 32278 31980051 ~ 31982392 (+)
G77684 NA non-coding downstream 34695 31982468 ~ 31982716 (+)
G77685 NA non-coding downstream 37693 31985466 ~ 31985740 (+)
G77687 NA non-coding downstream 42113 31989886 ~ 31990370 (+)
G77722 LOC102207529,LOC102306104 non-coding downstream 191004 32138777 ~ 32140143 (+)
G77447 NA other upstream 807265 31134829 ~ 31136146 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other upstream 1211802 30687338 ~ 30731609 (+)
LOC120562443 NA other upstream 1582823 30351495 ~ 30360588 (+)
G77239 NA other upstream 1818773 30123702 ~ 30124638 (+)
rgl2 LOC101463702,LOC100700084,LOC102303531,LOC102796597 other upstream 1833866 30073937 ~ 30109545 (+)
G77682 tbx20 other downstream 28545 31976318 ~ 31979909 (+)
LOC120561717 NA other downstream 457360 32405133 ~ 32421472 (+)
G77888 NA other downstream 1152640 33100413 ~ 33101534 (+)
bmper bmper other downstream 1878314 33826087 ~ 33879132 (+)
LOC120562157 NA other downstream 1946587 33894360 ~ 33904285 (+)

Expression


Co-expression Network