herpud2 (LOC103361314)


Basic Information

Item Value
gene id herpud2
gene name LOC103361314
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 31949622 ~ 31959398 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805810.1
tttttgttcttttcatcaGCTGTTGTGAGGAGAAGGCTGACGTGGCTtccggtctctctctctcacacacgatTACAACAACAAGgcgagcaggcaggcaggcgagCTGGGAAGGAGAGAGTAGACGACGGTACCACAAGAGTAAACAGaAATCCTAGAACTATCACCACACAAGAATTCCCATCAATATCGTCGGAAAGCACCAACTTTCCCCACAAACGAGGCACATGTTGTAAAAGGGGAACAGCAGGGAGAGTTTGAGGTGTGTTTTTACTGAGTCCAGAATGGAGAGGATTTGAGGTAACTTTCTCCTCAGGTCAGTCCTGAGTTGTGACGCTAAGCTCTCCTGAGCTCAGGTTCTTCAGAGCCCACCCTGCTAGTAATATGAGCCATGGACTCCTGGGCAGTTGAGAGTCCTGTAACCCTGGTCATTAAGGCCCCCAACCAGAAGTATGAAGACCAGACCATTAACTGCTTCCTCAACTGGACTGTAGAGAGGCTGAAGAGTCACATCTCCAATGTGTACCCCAGCAAGCCGCTGTCCAAAGACCAGCGGCTGGTGTACTCAGGAAGGCTCCTTCAAGACCACCTACAGCTCAGAGATGTGCTTAGAAAGCAAGATGAATACCACATGATGCATTTAGTGTGTACCTCTCACAGCCCCCCAGCCTCGCCCATGCCTCGGAGCCCTTCCACAGCTAACTCTTCTGCTTCTGACCCCAGCAGTTCACAAGCCGCAGCCTCGGCTTCCTCTGCCACCGCACCAAATCAGGACAGCCAGCcagcctcctcttcttcctcctcctcctcctcctcctcctcctcttcttcttctgtcccAGGAAGTTATGATGGCCTGAGGTATCGCGGCGGCTTCCCCCAGTACAACCCCCAGGGCCCCGCTGGTGTCCCTCAGTGGCCAGATGGAGTCCAGGTCCCTTTACAAGGCGACCTCCCTGCCAACATGCCCCCCCACCCCATGTACATGCCCATGCAGATGCTGTGGTGGCAGCAGATGTATGCACGCCACTACTACATGCAATATCAAGCCGCTGTAGCTGCCTCTCAGCCTCCCaacaccccccctccctcctctccctcctcctcgcCCCATCAACCCGCCCAGCCCAACGAAGCCGTGCAGCCCCCGCTGGGGCCCAACCCAGCTGCCAACCCTTTACCTGAGAACCAGCCGGCCAACCCCAACATCCAGATGAACGCGCAGGGCGGGGCAGTGATGAACGACGACGAGCTGAACCGCGATTGGCTGGACTGGTTGTACACGGTGTCTCGCGCCGGCGTCCTGCTCAGCATCgtttacttctactcctcttTTAGCCGCTTCGTCATGGTGGTCGGCGCCATGCTGCTGGTCTACCTGCACCAGGCCGGTTGGTTTCCCTTCAGGCCGGAGCAGCAGAACccccgaggaggaggagaaagggccAGGCCTCCTCAGGAGGAAGCAGAGAGACACCAAGACATACAGGAAATGGAACGTCTGATGGATGAGGGGATGGAGGAGGACGACAGCGGCGAGGAAGGAGGGGGAGGCCCTGAGGACCCGGCCCAGGCTGCTGCCGCCGCTGCTCTCCCAGAACCAAGCTTCCTTACCACCGCGTGGTCCTTCATCAGCACCTTCTTCACCTCGCTCATCCCAGAGGGACGGCCCCAAGCAGCCAACTAGGCAGACACTACCCCTGCTCTTACTCTCATACACCCCTCTTCCTTCTGCCAGCAGGTACCACTCTACAGAAGTATCACAATTCCCACTTTTCGTCTTTACTGTCTTAACTTCTTCAGATACCCCTCCCCCCACCGTTCAAATGCCCTTTTTACCCCAGTACAACCCCTGCCAGTCGGCTACTAACCTCGGCCGATATTTAAAACGGGCTCCTCTGAagtttaagagcagatacattGGGAGTTCTGCAGGAGGGTATGAGAATAAACGGACATGTAGAAAATAAATCTCGTGTTGTGTTAATGGAGTAAATGCTTCTTCAGcagtgaaagttttttttttttttttttttttctttcttttcatcaaTCGTGAATTCATTGAGACGTGCCGGTGGCGAGAGACCCTGCAGGGAACTGTCTTCCATTTTAAGCAGTGATAAGTTCATGCTCTTGAAACTTTTAAACGACGGATGTGacccataaaaaaaaataaaaaataaaaagagaatcTGGACTCTCCCTAGATTGGGAGGGAGATGTGTGTCGTTAACACACCATGGAAACCACATCCCTAAAGACATTTTCATGTATGCACGCGATGTGCATAAAGACATTGCAGCTATTAAAGCACATTGTTTTCCCACTTTGTGTATTTGAACATTATTTACTCATGTAAGGAATATGCATCTTTAATTTCTGAATATATGCTTTTTGAATAAAAATCTTGCTGCGGTT

Function

NR:

description
homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805810.1 True 2421 mRNA 0.52 9 31949622 31959398

Neighbor

gene id symbol gene type direction distance location
pkdc LOC102076377,LOC101468599,LOC102793757,LOC102209191,LOC102303972 coding upstream 1849 31943411 ~ 31947773 (+)
LOC120562640 NA coding upstream 17575 31917746 ~ 31932047 (+)
arl4aa arl4a,LOC103374731,LOC104928894 coding upstream 444960 31500830 ~ 31504662 (+)
si:dkey-30e9.6 NA coding upstream 451136 31497043 ~ 31498486 (+)
vwde wif1 coding upstream 500171 31444788 ~ 31449451 (+)
dpy19l1l dpy19l1,LOC102792675 coding downstream 130760 32090158 ~ 32124377 (+)
LOC120562212 NA coding downstream 185994 32145392 ~ 32149331 (+)
smarcc1a smarcc1 coding downstream 206921 32166319 ~ 32193048 (+)
LOC120562445 NA coding downstream 245356 32204754 ~ 32212177 (+)
cspg5a cspg5,LOC103364230 coding downstream 269605 32229003 ~ 32293702 (+)
G77669 NA non-coding upstream 6828 31942035 ~ 31942794 (+)
G77666 NA non-coding upstream 14560 31933085 ~ 31935062 (+)
G77593 NA non-coding upstream 326456 31622827 ~ 31623166 (+)
G77592 NA non-coding upstream 335307 31612481 ~ 31614315 (+)
G77591 NA non-coding upstream 338311 31611058 ~ 31611311 (+)
G77683 NA non-coding downstream 20653 31980051 ~ 31982392 (+)
G77684 NA non-coding downstream 23070 31982468 ~ 31982716 (+)
G77685 NA non-coding downstream 26068 31985466 ~ 31985740 (+)
G77687 NA non-coding downstream 30488 31989886 ~ 31990370 (+)
G77722 LOC102207529,LOC102306104 non-coding downstream 179379 32138777 ~ 32140143 (+)
G77447 NA other upstream 813476 31134829 ~ 31136146 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other upstream 1218013 30687338 ~ 30731609 (+)
LOC120562443 NA other upstream 1589034 30351495 ~ 30360588 (+)
G77239 NA other upstream 1824984 30123702 ~ 30124638 (+)
rgl2 LOC101463702,LOC100700084,LOC102303531,LOC102796597 other upstream 1840077 30073937 ~ 30109545 (+)
G77682 tbx20 other downstream 16920 31976318 ~ 31979909 (+)
LOC120561717 NA other downstream 445735 32405133 ~ 32421472 (+)
G77888 NA other downstream 1141015 33100413 ~ 33101534 (+)
bmper bmper other downstream 1866689 33826087 ~ 33879132 (+)
LOC120562157 NA other downstream 1934962 33894360 ~ 33904285 (+)

Expression


Co-expression Network