tnfrsf1a


Basic Information

Item Value
gene id tnfrsf1a
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23836781 ~ 23843959 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805813.1
CCGAAAGGGGCAATGGCACAGTCGCTTAACCTTCGGTAAAAGAAAGTATACATAGTTATATTGAATTAAATCTACATTAATGTCGATATATGGACCTGAAGTAAAAGAGGTATCGCTCGGTGTGACAGTGGTTATCAAGcagcagcagcagcagcagcaacaacaacaacaacaacaacaaccaacaacaacaacaacaacaacaacaacaacaacagGTGGCCTCCAATGGATTGAGCTAAACCTGTAAGATATGGAGGGAGCTGGGCACAGAGGAAGATGGGACATAAAAGCCCCTGTTGGCACAATACTGCTCCTTATGTGCATGTTCATCCCCACTCTGACATTGTTACAACCTTCAGAGGAGAAGACGTGTCCACATGGCGACTATCTCACTGAAAAGGGAATTTGTTGCAACAAATGCCCTCCAGGTTTTAAGCTTGTAGAAATGTGTCATGCTACGGGTCACAGAAGTAACTGCACAAAATGTCCCGATCGGCAATATACAGACGAGATGAACTACTCCCGCAACTGCAGAAGTTGCAGACGCTGCAAAGGAAAGCATGACAAGGAGATATCATCATGTGAATATAACAAAAACACGATTTGTAAATGTGAGGATGGTTATTACAAGTCTGTTATTGACTCAGAAACATACGAGTGTCTGAGATGTTCACCGTGTGGACAGAATGAAAAGCCAAAACAGACATGTACACCAGAGAAAAAtactgtgtgtgaatgtgaagaGAACTACTACAAAGTCAAGGGCAAGTGTGAGCCCTGCAAGAATTGTACCGCTGAGTGCAAACATCAATGTCAACCATCAactcctactcctcctcctcctcctactcctACTACAAAAGCTCCTCTGCCTGAAGGTGTAAATCTTATCAAGATAATTGCTGGAGTTGCAGTTATGGCTGTGATATTGCTGGTGCTGTTGGTTCTCATCACCTACATTGTTACAAAACGGACTATCAAAAATAAGTTGCTGAAACCATACTGTCAACCCTCTGACGTCTCTGTGGACTCATGCGAGCGAGCCCTGTTCCACATCGAGGAACCTTCAGACAACATGAGTGTCAAGGCTCTTCCCCAAAGTCCTGTGAGTGAACAGGAACCATACAATCTGCCTGACTGTGTCCCCCTAGAAGTCAAGATCCCTGACCTGATCTACACGGTGCTGGATCTGGTTCCTGTGCTGCAGGTAAAGCAGCTGGTGCGTTCTCTCGGTGTGGAGGATACAGAGATCGAACAAGCAGAGATGGATCACCGATCCTGCCGCGAGGCTCACTACCAGATGCTGAGAGTGTGGGCTGAGCGAGGGTCACGTAGAGGTGGAGGAGGACGAGGTAGAATGCTGCACTCGCCCTTGTTGCAGGAGTTGTTGGAGGAACTGAGAAAGATGAACCTGGGACGGGCAGCCGAGGAGCTGGAGACAAAGTACGGCATTCAGTAGTTCTGCAACAAGTGCCAAGTGGAACAAGAAGCGCATGAAACCAAGTATTGTTCTCTTTAGAGAGTCACTCAAAGGCAGCCTCAAAGCATGACACGGTGCTacagcagttttatttttatcactCTCGTCCTGCCAAACACTTGCTGAAAAGACGGTCAAACTACTGAGAGCGACAGATCAAATGGTTCATAGAGGCAGAGTCATATGTATATGCAAATGTTTGCTTTTTAAAGGAATAATAAGACATTTTAGGATGGGACGACCAGCAAGAAAGGGAAtaagagtattttttttaaatacgctGTTTCTTTAGTATcactatactgtacagtatatctttGGAAATGTTGGGGAATATTTTATGATTTCATACTGGacttattactttttattataCAACATGCATTCATGATTTGAGTGTTTTCGACTGCATTTTGTACTAAATAGTATCTACTGTTGTACAAACTGTTTTATACATCGTGCCTACTCTATCATATGTAGTAAGGCCAATTAAGCTAATCTATTTCTGTTAGTGTCATCAGTCACCATTAAAAGGTGTGTTAAAACATTGCAgacattagttttttttagcacGGGGAAGTAAGTATTCATCTGTGCCATTAACTGGTAATGTTTTAATAGTAGTTCCTGGTTACATTGTTAAAACAGTTCTAGTCTTGTTTATTTAAATCTTATGGGACAGCACGGTGCAAGGTTGGCACTGCTGCCTCACAGCCAGTAGGCACTGCTGAGAACTGGATCACCGGTCCTTGCAGGACCTTTCTGGAGTCTCCCCGGGTTCGAGTGGGTTTTCTCTCAaagtgctccggtttcccccaccataaagacatgcgtACTAGGTAACTCCTGCCAGTGCCCTTATCATTAAGGGCTAATTAGTTGAggggttaaatgcagaggatGCATTCCTAAAATGTGTTACATACTtggcaaataaagaaaatagtattatataatattagaTAAAGAACAATACCAAAGCCAGGGAAGTCTGCAGTTCCTATTAGACCAGACCCCTGCTACTTATTTTACAGGCTTTTCACAGCCTCATTAGCGTTCTTTTGAACCCCATCATACAAGCATTATTCATTACTGTCAGAGAAAACAGGACACGCCTTGTTTCAGTCTGCCTCAGCCAAGTGAACTTTTATAATTCCAGTCTTGGCCTGCAGATTCAGTGATGAATCAGTCACTCTCAGACAGACTGAGGACGTGTCATTCCACAGCACTTTTATCCTACACTGAATTGTATAGCCAAACAGAACAATTTATTCACTGAGCAATCCATGTTGAGCAGTATATAACAGATTTTGTGATAATATCTGAACTTTAAATAAATCTGTCTTTGTATCTTAA
>XM_039805814.1
GTAAAAGAAAGTATACATAGTTATATTGAATTAAATCTACATTAATGTCGATATATGGACCTGAAGTAAAAGAGGTATCGCTCGGTGTGACAGTGGTTATCAAGcagcagcagcagcagcaacaacaacaacaacaacaacaaccaacaacaacaacaacaacaacaacaacaacaacagGTGGCCTCCAATGGATTGAGCTAAACCTGTAAGATATGGAGGGAGCTGGGCACAGAGGAAGATGGGACATAAAAGCCCCTGTTGGCACAATACTGCTCCTTATGTGCATGTTCATCCCCACTCTGACATTGTTACAACCTTCAGAGGAGAAGACGTGTCCACATGGCGACTATCTCACTGAAAAGGGAATTTGTTGCAACAAATGCCCTCCAGGTTTTAAGCTTGTAGAAATGTGTCATGCTACGGGTCACAGAAGTAACTGCACAAAATGTCCCGATCGGCAATATACAGACGAGATGAACTACTCCCGCAACTGCAGAAGTTGCAGACGCTGCAAAGGAAAGCATGACAAGGAGATATCATCATGTGAATATAACAAAAACACGATTTGTAAATGTGAGGATGGTTATTACAAGTCTGTTATTGACTCAGAAACATACGAGTGTCTGAGATGTTCACCGTGTGGACAGAATGAAAAGCCAAAACAGACATGTACACCAGAGAAAAAtactgtgtgtgaatgtgaagaGAACTACTACAAAGTCAAGGGCAAGTGTGAGCCCTGCAAGAATTGTACCGCTGAGTGCAAACATCAATGTCAACCATCAactcctactcctcctcctcctcctactcctACTACAAAAGCTCCTCTGCCTGAAGGTGTAAATCTTATCAAGATAATTGCTGGAGTTGCAGTTATGGCTGTGATATTGCTGGTGCTGTTGGTTCTCATCACCTACATTGTTACAAAACGGACTATCAAAAATAAGTTGCTGAAACCATACTGTCAACCCTCTGACGTCTCTGTGGACTCATGCGAGCGAGCCCTGTTCCACATCGAGGAACCTTCAGACAACATGAGTGTCAAGGCTCTTCCCCAAAGTCCTGTGAGTGAACAGGAACCATACAATCTGCCTGACTGTGTCCCCCTAGAAGTCAAGATCCCTGACCTGATCTACACGGTGCTGGATCTGGTTCCTGTGCTGCAGGTAAAGCAGCTGGTGCGTTCTCTCGGTGTGGAGGATACAGAGATCGAACAAGCAGAGATGGATCACCGATCCTGCCGCGAGGCTCACTACCAGATGCTGAGAGTGTGGGCTGAGCGAGGGTCACGTAGAGGTGGAGGAGGACGAGGTAGAATGCTGCACTCGCCCTTGTTGCAGGAGTTGTTGGAGGAACTGAGAAAGATGAACCTGGGACGGGCAGCCGAGGAGCTGGAGACAAAGTACGGCATTCAGTAGTTCTGCAACAAGTGCCAAGTGGAACAAGAAGCGCATGAAACCAAGTATTGTTCTCTTTAGAGAGTCACTCAAAGGCAGCCTCAAAGCATGACACGGTGCTacagcagttttatttttatcactCTCGTCCTGCCAAACACTTGCTGAAAAGACGGTCAAACTACTGAGAGCGACAGATCAAATGGTTCATAGAGGCAGAGTCATATGTATATGCAAATGTTTGCTTTTTAAAGGAATAATAAGACATTTTAGGATGGGACGACCAGCAAGAAAGGGAAtaagagtattttttttaaatacgctGTTTCTTTAGTATcactatactgtacagtatatctttGGAAATGTTGGGGAATATTTTATGATTTCATACTGGacttattactttttattataCAACATGCATTCATGATTTGAGTGTTTTCGACTGCATTTTGTACTAAATAGTATCTACTGTTGTACAAACTGTTTTATACATCGTGCCTACTCTATCATATGTAGTAAGGCCAATTAAGCTAATCTATTTCTGTTAGTGTCATCAGTCACCATTAAAAGGTGTGTTAAAACATTGCAgacattagttttttttagcacGGGGAAGTAAGTATTCATCTGTGCCATTAACTGGTAATGTTTTAATAGTAGTTCCTGGTTACATTGTTAAAACAGTTCTAGTCTTGTTTATTTAAATCTTATGGGACAGCACGGTGCAAGGTTGGCACTGCTGCCTCACAGCCAGTAGGCACTGCTGAGAACTGGATCACCGGTCCTTGCAGGACCTTTCTGGAGTCTCCCCGGGTTCGAGTGGGTTTTCTCTCAaagtgctccggtttcccccaccataaagacatgcgtACTAGGTAACTCCTGCCAGTGCCCTTATCATTAAGGGCTAATTAGTTGAggggttaaatgcagaggatGCATTCCTAAAATGTGTTACATACTtggcaaataaagaaaatagtattatataatattagaTAAAGAACAATACCAAAGCCAGGGAAGTCTGCAGTTCCTATTAGACCAGACCCCTGCTACTTATTTTACAGGCTTTTCACAGCCTCATTAGCGTTCTTTTGAACCCCATCATACAAGCATTATTCATTACTGTCAGAGAAAACAGGACACGCCTTGTTTCAGTCTGCCTCAGCCAAGTGAACTTTTATAATTCCAGTCTTGGCCTGCAGATTCAGTGATGAATCAGTCACTCTCAGACAGACTGAGGACGTGTCATTCCACAGCACTTTTATCCTACACTGAATTGTATAGCCAAACAGAACAATTTATTCACTGAGCAATCCATGTTGAGCAGTATATAACAGATTTTGTGATAATATCTGAACTTTAAATAAATCTGTCTTTGTATCTTAA
>XM_039805815.1
ATTGAATTAAATCTACATTAATGTCGATATATGGACCTGAAGTAAAAGAGGTATCGCTCGGTGTGACAGTGGTTATCAAGcagcagcaacaacaacaacaacaacaacaaccaacaacaacaacaacaacaacaacaacaacaacagGTGGCCTCCAATGGATTGAGCTAAACCTGTAAGATATGGAGGGAGCTGGGCACAGAGGAAGATGGGACATAAAAGCCCCTGTTGGCACAATACTGCTCCTTATGTGCATGTTCATCCCCACTCTGACATTGTTACAACCTTCAGAGGAGAAGACGTGTCCACATGGCGACTATCTCACTGAAAAGGGAATTTGTTGCAACAAATGCCCTCCAGGTTTTAAGCTTGTAGAAATGTGTCATGCTACGGGTCACAGAAGTAACTGCACAAAATGTCCCGATCGGCAATATACAGACGAGATGAACTACTCCCGCAACTGCAGAAGTTGCAGACGCTGCAAAGGAAAGCATGACAAGGAGATATCATCATGTGAATATAACAAAAACACGATTTGTAAATGTGAGGATGGTTATTACAAGTCTGTTATTGACTCAGAAACATACGAGTGTCTGAGATGTTCACCGTGTGGACAGAATGAAAAGCCAAAACAGACATGTACACCAGAGAAAAAtactgtgtgtgaatgtgaagaGAACTACTACAAAGTCAAGGGCAAGTGTGAGCCCTGCAAGAATTGTACCGCTGAGTGCAAACATCAATGTCAACCATCAactcctactcctcctcctcctcctactcctACTACAAAAGCTCCTCTGCCTGAAGGTGTAAATCTTATCAAGATAATTGCTGGAGTTGCAGTTATGGCTGTGATATTGCTGGTGCTGTTGGTTCTCATCACCTACATTGTTACAAAACGGACTATCAAAAATAAGTTGCTGAAACCATACTGTCAACCCTCTGACGTCTCTGTGGACTCATGCGAGCGAGCCCTGTTCCACATCGAGGAACCTTCAGACAACATGAGTGTCAAGGCTCTTCCCCAAAGTCCTGTGAGTGAACAGGAACCATACAATCTGCCTGACTGTGTCCCCCTAGAAGTCAAGATCCCTGACCTGATCTACACGGTGCTGGATCTGGTTCCTGTGCTGCAGGTAAAGCAGCTGGTGCGTTCTCTCGGTGTGGAGGATACAGAGATCGAACAAGCAGAGATGGATCACCGATCCTGCCGCGAGGCTCACTACCAGATGCTGAGAGTGTGGGCTGAGCGAGGGTCACGTAGAGGTGGAGGAGGACGAGGTAGAATGCTGCACTCGCCCTTGTTGCAGGAGTTGTTGGAGGAACTGAGAAAGATGAACCTGGGACGGGCAGCCGAGGAGCTGGAGACAAAGTACGGCATTCAGTAGTTCTGCAACAAGTGCCAAGTGGAACAAGAAGCGCATGAAACCAAGTATTGTTCTCTTTAGAGAGTCACTCAAAGGCAGCCTCAAAGCATGACACGGTGCTacagcagttttatttttatcactCTCGTCCTGCCAAACACTTGCTGAAAAGACGGTCAAACTACTGAGAGCGACAGATCAAATGGTTCATAGAGGCAGAGTCATATGTATATGCAAATGTTTGCTTTTTAAAGGAATAATAAGACATTTTAGGATGGGACGACCAGCAAGAAAGGGAAtaagagtattttttttaaatacgctGTTTCTTTAGTATcactatactgtacagtatatctttGGAAATGTTGGGGAATATTTTATGATTTCATACTGGacttattactttttattataCAACATGCATTCATGATTTGAGTGTTTTCGACTGCATTTTGTACTAAATAGTATCTACTGTTGTACAAACTGTTTTATACATCGTGCCTACTCTATCATATGTAGTAAGGCCAATTAAGCTAATCTATTTCTGTTAGTGTCATCAGTCACCATTAAAAGGTGTGTTAAAACATTGCAgacattagttttttttagcacGGGGAAGTAAGTATTCATCTGTGCCATTAACTGGTAATGTTTTAATAGTAGTTCCTGGTTACATTGTTAAAACAGTTCTAGTCTTGTTTATTTAAATCTTATGGGACAGCACGGTGCAAGGTTGGCACTGCTGCCTCACAGCCAGTAGGCACTGCTGAGAACTGGATCACCGGTCCTTGCAGGACCTTTCTGGAGTCTCCCCGGGTTCGAGTGGGTTTTCTCTCAaagtgctccggtttcccccaccataaagacatgcgtACTAGGTAACTCCTGCCAGTGCCCTTATCATTAAGGGCTAATTAGTTGAggggttaaatgcagaggatGCATTCCTAAAATGTGTTACATACTtggcaaataaagaaaatagtattatataatattagaTAAAGAACAATACCAAAGCCAGGGAAGTCTGCAGTTCCTATTAGACCAGACCCCTGCTACTTATTTTACAGGCTTTTCACAGCCTCATTAGCGTTCTTTTGAACCCCATCATACAAGCATTATTCATTACTGTCAGAGAAAACAGGACACGCCTTGTTTCAGTCTGCCTCAGCCAAGTGAACTTTTATAATTCCAGTCTTGGCCTGCAGATTCAGTGATGAATCAGTCACTCTCAGACAGACTGAGGACGTGTCATTCCACAGCACTTTTATCCTACACTGAATTGTATAGCCAAACAGAACAATTTATTCACTGAGCAATCCATGTTGAGCAGTATATAACAGATTTTGTGATAATATCTGAACTTTAAATAAATCTGTCTTTGTATCTTAA

Function

NR:

description
PREDICTED: tumor necrosis factor receptor superfamily member 1A-like

GO: NA

KEGG:

id description
K03158 TNFRSF1A, TNFR1, CD120a; tumor necrosis factor receptor superfamily member 1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805813.1 True 2839 mRNA 0.43 11 23836781 23843959
XM_039805814.1 False 2801 mRNA 0.42 11 23836816 23843959
XM_039805815.1 False 2768 mRNA 0.43 11 23836840 23843959

Neighbor

gene id symbol gene type direction distance location
si:dkey-260g12.1 NA coding upstream 7096 23823324 ~ 23829685 (+)
iffo1b iffo1,LOC102791264 coding upstream 14438 23808580 ~ 23822343 (+)
opn9 NA coding upstream 28615 23803552 ~ 23808166 (+)
gapdh gapdh,LOC102791742 coding upstream 34594 23797078 ~ 23802187 (+)
wu:fj39g12 LOC104929004,LOC100710783,LOC101474397 coding upstream 43688 23791000 ~ 23793093 (+)
plekhg6 NA coding downstream 118 23844077 ~ 23858278 (+)
mrpl51 mrpl51,LOC102789637 coding downstream 25678 23869637 ~ 23871714 (+)
LOC120562185 NA coding downstream 77811 23921770 ~ 23937821 (+)
wnt4b LOC104932544,LOC103356104,LOC101479331 coding downstream 154476 23998435 ~ 24002544 (+)
mlf2 mlf2 coding downstream 166924 24010883 ~ 24019095 (+)
LOC120561968 NA non-coding upstream 202947 23631416 ~ 23633834 (+)
G75301 NA non-coding upstream 342304 23494213 ~ 23494477 (+)
G75227 NA non-coding upstream 395555 23437096 ~ 23441226 (+)
G75199 LOC103372680 non-coding upstream 482606 23351145 ~ 23354175 (+)
G75197 NA non-coding upstream 486014 23346840 ~ 23350767 (+)
G75427 NA non-coding downstream 39218 23883177 ~ 23884631 (+)
G75483 ptpn6 non-coding downstream 99534 23943493 ~ 23948403 (+)
G75493 NA non-coding downstream 128368 23972327 ~ 23975734 (+)
G75517 NA non-coding downstream 183924 24027883 ~ 24031339 (+)
G75523 tpi1,tpi,LOC102304959 non-coding downstream 204966 24048925 ~ 24052956 (+)
LOC120563204 NA other upstream 23373 23768233 ~ 23813408 (+)
casp2 casp2,LOC102795506,LOC103369458 other upstream 185285 23641555 ~ 23651496 (+)
trpv6 LOC104929027,LOC104960406,LOC103388006,LOC107082237 other upstream 265538 23560848 ~ 23571243 (+)
LOC120562612 LOC103367657,LOC105025867,LOC103136704 other upstream 342747 23491125 ~ 23494034 (+)
LOC120562293 LOC103360151,LOC102310947,LOC102785150 other upstream 753634 23070587 ~ 23083147 (+)
LOC120563047 vamp1,LOC104928996 other downstream 29950 23873909 ~ 23879415 (+)
atn1 atn1 other downstream 182956 24026915 ~ 24039427 (+)
lpcat3 lpcat3 other downstream 212478 24056437 ~ 24073698 (+)
G75644 NA other downstream 591180 24435139 ~ 24436819 (+)
dedd1 dedd2 other downstream 676776 24520735 ~ 24534276 (+)

Expression


Co-expression Network