LOC120562234


Basic Information

Item Value
gene id LOC120562234
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 30205177 ~ 30212236 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805838.1
agaAATGATAAATTTAAAGGAAAAATCAGCACATTAATCGAGATGAAAACAACCATTGTCTTAAAGCTGGAGCACAAATGACCcctcttttttgtgtttttttatttttctttattttttttctttaactacTCGATTgctacaaaaacaaatattgcCTTGCAGTATACTGAAGTATGATATGACATACAGTTAACAGGGCATTCTATAgcataaaaaaacaagataaacaCTGTAAACTTTGAATtttaagagaaaaaaatgtgtccAATTTAGGTTTTCTCCAGACAGGTGCAaatattgtgattatgatttcccTCCACTAGGTGGCAGCAGTTACTCATGCTAAAATCAGAgcgacatgttccttcattgtTTTCAAGGTGGGAACATTGTTGTCACTGAAGCATCGACTGGTTTGTGTCCTCTCAGCATGTGAATCGTTGGTGTCAGTGAAACCTGCTCAGTTTGCGTTTTGGAGAACCGGAAATGCAACATGGCAATGAATCTGTTCCCAGTGCTGCTGGTTATTTGTCTTCCAAAATGGAGCCAAGGTAAACACTTGCTTCGTTTTCTGACCTTCTGTCAAAGGAATGTGATAAGTGACGGCCAGTATGATATCGAATTTGACGGCGATCAGCTCCTCTACGTTGACCCGGTCACCTATCAGACAGTTCAGCGTCTGCCAGAGTTTGCAGAGCAGTGGATTCCTGATCCTGAACTAGCCCATGACACATTTGTGTCCCTGGGTACCTGCAAGTACAACATCCCACGAGCCATAAAGGGAGAAAATCATCCTCCGGAGACCATAGCCAGTCCCACCTCCATAATCTACCCCAAGCAGGAGATGGAACTGGAGGTCCCCAACACCCTCATCTGCTTTGTCACCGACTTCCATCCGCCTACAGTCACCATCACCTGGACCAGGAATGGCCAGCTGGTGGACCAGAGTGAGGTCAGTCAGACTCAGTACTACTCCAACAGAGACTTCAGCTTCTGCATCTCCTCCTACCTGGACTTCACTCCGCAGGAGAACGACATCTACTCCTGCAGCGTGGACCACATCAGCCTGCGGGCGCCTCTCACCAGGTTCCTGAATGTTGCCACAGTACCCACAGACCAGCAGGTtgtagagacagcagtgtgTGTTGCTGGTGTGATCCTGGGGCTGATTGGAGTTGTCACAGGACTCTGGTTCATCATGAAAGCCAACAAGTCCTGCCAGGCGTAACACGCATTTAGACAATTGACACCTGAATTTCGATGTCAGATGTGTGATCACGTTATCTTTTTCCCCATGTGGTTTTCCTCTGGTTGCAAGGTGGAGTGAAAAGTATTTTTATCAtagctttattttgtttttacaccTGCACTGTTTTATGTTGTCTGTATCTGTATGTTTTTCTTTCACATGCACAACAACACTGAATGTAAACCTGAGCTAAAAGTACATCAGTTAAAGctatagtttgacattttggaaacagggggaaacaactagcctggctctgtccaacagCGACAAagtccacctaccagcacctctaaagctcactaattagaAAGAAATATTCCAGCACATAACCCCCCATAAAATagaatattgttgtttttttacgcttaagttttaaaattatttgaattaaacaaaacaaatataacaAGTTCATTTTTGAGCTTAGAGGTGCCGGTGAATTATCCCAAAATGtttaactattcctttaagaattCAAGGGATCATATTTCTAAATTTGCTTGAAAAAATGTATGCAGTGGACTCTATGCTTTAAAGGAGTTAAAATTATCAACTTAGCACAGATAGTCTAACACGATTGTCTTTCACTTTACAGAAGagtgtaatatatatttttctaataATATCAGAAAATGCATGTTTTGCCATATCGTAGCTAAGTATCAGGTTTGCTGCTTATTGTGTTTGTCATGTACAAATTAAGCACATGAAGGGAAGTTGAAAATATCTGTTCCTGTTTGTTCTACCACATGTCAAAGTACATGCAAACCACATTAAAATGAAAGAGAACAGTTC
>XM_039805839.1
agaAATGATAAATTTAAAGGAAAAATCAGCACATTAATCGAGATGAAAACAACCATTGTCTTAAAGCTGGAGCACAAATGACCcctcttttttgtgtttttttatttttctttattttttttctttaactacTCGATTgctacaaaaacaaatattgcCTTGCAGTATACTGAAGTATGATATGACATACAGTTAACAGGGCATTCTATAgcataaaaaaacaagataaacaCTGTAAACTTTGAATtttaagagaaaaaaatgtgtccAATTTAGGTTTTCTCCAGACAGGTGCAaatattgtgattatgatttcccTCCACTAGGTGGCAGCAGTTACTCATGCTAAAATCAGAgcgacatgttccttcattgtTTTCAAGGTGGGAACATTGTTGTCACTGAAGCATCGACTGGTTTGTGTCCTCTCAGCATGTGAATCGTTGGTGTCAGTGAAACCTGCTCAGTTTGCGTTTTGGAGAACCGGAAATGCAACATGGCAATGAATCTGTTCCCAGTGCTGCTGGTTATTTGTCTTCCAAAATGGAGCCAAGGAATGTGATAAGTGACGGCCAGTATGATATCGAATTTGACGGCGATCAGCTCCTCTACGTTGACCCGGTCACCTATCAGACAGTTCAGCGTCTGCCAGAGTTTGCAGAGCAGTGGATTCCTGATCCTGAACTAGCCCATGACACATTTGTGTCCCTGGGTACCTGCAAGTACAACATCCCACGAGCCATAAAGGGAGAAAATCATCCTCCGGAGACCATAGCCAGTCCCACCTCCATAATCTACCCCAAGCAGGAGATGGAACTGGAGGTCCCCAACACCCTCATCTGCTTTGTCACCGACTTCCATCCGCCTACAGTCACCATCACCTGGACCAGGAATGGCCAGCTGGTGGACCAGAGTGAGGTCAGTCAGACTCAGTACTACTCCAACAGAGACTTCAGCTTCTGCATCTCCTCCTACCTGGACTTCACTCCGCAGGAGAACGACATCTACTCCTGCAGCGTGGACCACATCAGCCTGCGGGCGCCTCTCACCAGGTTCCTGAATGTTGCCACAGTACCCACAGACCAGCAGGTtgtagagacagcagtgtgTGTTGCTGGTGTGATCCTGGGGCTGATTGGAGTTGTCACAGGACTCTGGTTCATCATGAAAGCCAACAAGTCCTGCCAGGCGTAACACGCATTTAGACAATTGACACCTGAATTTCGATGTCAGATGTGTGATCACGTTATCTTTTTCCCCATGTGGTTTTCCTCTGGTTGCAAGGTGGAGTGAAAAGTATTTTTATCAtagctttattttgtttttacaccTGCACTGTTTTATGTTGTCTGTATCTGTATGTTTTTCTTTCACATGCACAACAACACTGAATGTAAACCTGAGCTAAAAGTACATCAGTTAAAGctatagtttgacattttggaaacagggggaaacaactagcctggctctgtccaacagCGACAAagtccacctaccagcacctctaaagctcactaattagaAAGAAATATTCCAGCACATAACCCCCCATAAAATagaatattgttgtttttttacgcttaagttttaaaattatttgaattaaacaaaacaaatataacaAGTTCATTTTTGAGCTTAGAGGTGCCGGTGAATTATCCCAAAATGtttaactattcctttaagaattCAAGGGATCATATTTCTAAATTTGCTTGAAAAAATGTATGCAGTGGACTCTATGCTTTAAAGGAGTTAAAATTATCAACTTAGCACAGATAGTCTAACACGATTGTCTTTCACTTTACAGAAGagtgtaatatatatttttctaataATATCAGAAAATGCATGTTTTGCCATATCGTAGCTAAGTATCAGGTTTGCTGCTTATTGTGTTTGTCATGTACAAATTAAGCACATGAAGGGAAGTTGAAAATATCTGTTCCTGTTTGTTCTACCACATGTCAAAGTACATGCAAACCACATTAAAATGAAAGAGAACAGTTC

Function

GO: NA

KEGG:

id description
K06752 MHC2; MHC class II antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805838.1 True 2050 mRNA 0.41 4 30205177 30212236
XM_039805839.1 False 2013 mRNA 0.41 4 30205177 30212236

Neighbor

gene id symbol gene type direction distance location
brd2b LOC104928643,LOC103356858 coding upstream 121 30186346 ~ 30205056 (+)
tap1 tap1 coding upstream 23035 30170014 ~ 30182142 (+)
LOC120561633 NA coding upstream 67608 30136281 ~ 30137569 (+)
pbx2 LOC103356852,LOC108245987,LOC101487230,LOC102193020,LOC100704063 coding upstream 71641 30125926 ~ 30133536 (+)
ntrk1 NA coding upstream 393388 29780179 ~ 29811789 (+)
LOC120562442 NA coding downstream 403 30212639 ~ 30216695 (+)
LOC120561719 vmo1 coding downstream 6761 30218997 ~ 30223524 (+)
LOC120562225 LOC103356864 coding downstream 150471 30362707 ~ 30390432 (+)
si:dkey-82o10.4 NA coding downstream 492795 30705031 ~ 30713391 (+)
LOC120562210 LOC103357958,LOC107379173,LOC102233395,LOC103388353,LOC100705137,LOC103477709,LOC106523089 coding downstream 696794 30909030 ~ 30949188 (+)
LOC120562092 NA non-coding upstream 84081 30118008 ~ 30121096 (+)
G77198 LOC103388947,LOC102796900,LOC101464846 non-coding upstream 306424 29894234 ~ 29898753 (+)
G77172 NA non-coding upstream 391636 29812931 ~ 29813541 (+)
G77114 bola1 non-coding upstream 620177 29582757 ~ 29585000 (+)
G77097 NA non-coding upstream 739625 29464612 ~ 29465552 (+)
LOC120562235 NA non-coding downstream 4512 30216748 ~ 30218603 (+)
G77260 NA non-coding downstream 186040 30398276 ~ 30402704 (+)
G77399 NA non-coding downstream 764505 30976741 ~ 30977081 (+)
LOC120562708 NA non-coding downstream 766091 30978327 ~ 30988733 (+)
LOC120562710 NA non-coding downstream 802897 31015133 ~ 31016447 (+)
G77239 NA other upstream 80539 30123702 ~ 30124638 (+)
rgl2 LOC101463702,LOC100700084,LOC102303531,LOC102796597 other upstream 95632 30073937 ~ 30109545 (+)
G77028 LOC104942601 other upstream 792764 29404008 ~ 29412413 (+)
LOC120562177 LOC104942602,LOC104934039,LOC103362363 other upstream 815124 29384135 ~ 29390053 (+)
G77009 ubqln4 other upstream 874919 29328789 ~ 29330258 (+)
LOC120562443 NA other downstream 139259 30351495 ~ 30360588 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other downstream 475102 30687338 ~ 30731609 (+)
G77447 NA other downstream 922593 31134829 ~ 31136146 (+)
G77682 tbx20 other downstream 1764082 31976318 ~ 31979909 (+)
LOC120561717 NA other downstream 2192897 32405133 ~ 32421472 (+)

Expression


Co-expression Network