sphk2 (LOC104960464,LOC103388269,LOC106096428)


Basic Information

Item Value
gene id sphk2
gene name LOC104960464,LOC103388269,LOC106096428
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22838405 ~ 22849527 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805856.1
TTCCTTATCGCCATTGGACTTCCGCTCCGCCGCTCAAAGCTGCCGCTGCTGCGTCTCCAGACACTTCCTGCACGGAGCTACAGTTTTCAGAGCAAGCGACGCTCGTCGTGTGGGGGGAGACAAGATGAGGAATAAAGATCTTTGGGAGGGAACGTGAGGCTTGACTCAAGGACATTACCATGACATAGACTAAGAGTCCACCTGGAACTGTCTCCTTGTTTGTCTTTTGTTaggtttctgtttttattttttcgttGTCTAGTCTCCAACTGTCTTACCTGGTGTTTACACTCTCCTTGTGGAGAACAGATAATGAAATAGTATGCAGGAGTGTTTGTTTGCATGAAACTTTAATGTATCGCACTACTGTCTAGAGGACTGACCTAGTCACTCCTCGTGTCAGCCTCCTATATCACAGAGATTAAAGATAGCAATAGAGGTATCAAAGGTCTTGAAAAAAGTCTGCACTTATCATATCATTGCAGGAATAAATTACATTTCGGCCAGCACTTTTCATCCAACACACTATACCGAATTCTTTACTTGTGCtttaatttaattgttgtaGCCTTCTTGTTTAAACAAGGTGCGATTGTTTTTCTTATTCATACTTAATGGATCTATTTTTCAATGCAACCAAGAGTTTTAGTTTTGTCCATTTGTGTAATTATTTAAAGATGTATTATTAATGTCGAGGAGCTGCTCAGCTGCCTGATATTGTTATCGCAATAGGCGGCTTTAAGTTGTAATgtaaacattctttttttttttacttatgcAATCTTTGTGAAGAACAATTTTGTTTGAATTACTTATCTTGTAGTgggaaaatatacatttttaagttttattgTCTTTGAATATGTTGAAGTATTGCTCATTTTTCCACTGGCAGTAAACTGTAGAAGCTGATGGCTCTTCAGATCAAACTGATGGGAGCTTTCTAACTGTGACGCAAAGACTGATCTTAAGCAGTTTCCATCTTCACTGGATAAATACTCTAAACAGAAGAACCTTTGAACTGGAGTTTTCTTCTCAAATGAAGACATACCTCTTTAATAGATGGACGGAAACAAACTAAgagcagattttttttgtgtgacatTGTCTCTTGAATCCAAACACTGAAGAGGGAGAATGATTTTGAGGAGATTTCAGGGATAAAGCTCTCAGACTGACATTCAGATACATTTGGATTTTCCCTGCAAATCGTACGAGAGCTGCCGGATTCCACAAGCCTCTAACTGTAGAAAACACGACCCTAAAGCTTGTTAAACCAACTTTTTCCTGTAAAAGCCTTGTCCGCTTCAGCAGTGAGGATGCGATCTCCTGAACCATCTTCACCTTCCACAGCAGAAGCCCTCCTTCATGGCCAGTTTGCCAGTTGGGATTCaggcagcaacagcaacaataacagctgccccaacagcCCTGGTGGTCCGGGGAGACACTCTCCCGCTGCCTCCCCTACTCCGGCTCCAGCCTCCAACTATGCCTTGACCCTCACCCACACCCACATACATATTCAGCGGCTGTCACCACGGCCGGGGAAGGAAGCCCGTCTCTTGCTGCCTTTATCAGAGCTAGTGGGGTGCAGCTGCCCTCGCGCCCCTGCGCCCCCTCTCCTGGTGCTGTACTGGTACCCGCCAGGCAAACGACGTAAAGGGGTGTCTCGGCGCAGGCAGGTGAGGGCCTACCTGGCAGAAAGCAGGTCTGAAGCTGAGAGGTGGTCAGCTGCTGTACAGTGTCTACTCAGAGGTGTGACTGTCACTGCTGAAacagAATTTTCAAGAAGTCTGCTACCTCGTCCCAGGCGACTACTGTTATTGGTCAATCCCTTCAGTGGGAGAGGCCAGGCAATGCAGTGGTGTCAGACCCATATCCTGCCAATGATCAGAGAGGCCAACATCAGCTACAACCTTATACAGACAGAGCGTCAGAACCATGCCAGAGAGCTTATCAGAGAGTTATCGCTCCCAGAATGGGATGGCATCATCATTATCTCTGGAGATGGCCTGCTGCATGAGGTAATTAATGGGCTGATGGAGCGTCCTGACTGGGAACAAGCTATAAAAACACCTGTTGGCATTCTTCCCTGTGGCTCTGGGAATGCACTGGCTGGCTCCATCAACCACTATGCAGGGTATGACATGTGCCTTCGGGAGCCCCTCCTTTTGAATTGCTGCTTTTTGATTTGTCGAGGCGGTGTTCGACCGATGGACGTGGTCTCTGTGACAACAAGCCCTTCTCCCTCCACCAACAGTCGTACTGCAGCACCCAGGAGactgttttctttcctctctgttgCCTGGGGCTTTGTGTCCGATGTGGACATTGAGAGTGAGAGGTATCGTGGCCTGGGCTCAGCTCGCTTCACCCTGGGTACCCTGGTGCGCATAGCTTCTCTTCGATCCTACAAGGGTCGTCTGTCCTTCCTGCCTCCCTCTATTAGCGCCACATCACCAGACGCCACACCTCCTCCGCCAAGGAGACCCCTCTCCCGCAGTATCACAGAAGGCCTGGATGGCTTCTGTCGAACGCCCATCCATCGCACCTGCTCTGACATGGGCATCAGCGAACAGAGGAGCCTGCGTAGGggtgagggagagagggaaaaagaggagaggcagagagaaagggACAGAAGAAGGGAGAGGGCTAGGGGAGGAGGAACTGGCGTGGTGAGGGCAAGCAGCCTGGCagaggacagggagagagaggtagagatgGAAGCAGAAGAGGGGAGATCAGGGACATGTTCAGAGAGTTCAGAATCAATTGAAAGGGAAGACTGCAATATGGGAAAGATAGAAAGGTTGGCTGGGATCAAGGATGAGAGGGAAGATGAGGGAATTGTAGAGCAAGACTCCagtgagatggaggaggaggatagGGGGAAGGATGGGGAAGGCAGTGGTGGTTCtacagagggggagagagcgTTGCATGCAGTAGAGCCGGGAGAGAGCCGTGGGGTAGACATGGGGCGAGAGGCAGATGAAGAGCCAGAGGGTTACCAAGATGGGCTCCAGAAAGCCAGACAGGCACGGAGAAAGAATTCAGCCCCTTCAAGCCAGATAGCCAACGCTCTCTTCAACCAGCCTCTCAGTCGGGAGGCTGACACAGATTCGGGCACTTCATACGGGGTAGAGGACATGGATCTGAATGGAACCTACTACCAGGAAGAACCCTACCAACTGGACGTTGCTCGTGAGCGATCTCTCACCATCTCCTCTCCCTTTCGTCACTCACCCTTCTCTAACAAGCCCAAGACGCTGGACCAAAACCAGAACACCTCCCGGCCGaggcccctctctctcctccagcaCTCCCACTCAAACTCCCTCCCCCCTAAACTCCcttccctctccctgtctctttctccgaCACCCCCATCTTCCCCTTCATGTGCCTCCCCACACTCTTCATCCTACCTCGTCCCCCGTCCTAACACCCCAAATTCTACTTCGCCCTCACCCTCTCTACGCACACCGTCCTCATCTTTTAACTTTGACATTGCTGAGCCAGCAGGACCCCTAAAGAACCGTCCTTTTGTCTCACTGCCTTTAAATATCCCTCGGGATGACTTGTTACCTCCCCTCGACCAACCCCTTCCCACCAGAGACTGGGTCACCATCGAAGGGGACTTTGTCCTGGTCCTGGCCCTTTATCAGTCTCACCTCGGGGCTGATCTTCATGCTGCACCCCAGGCCAGGTTCGACGATGGGCTGATCCACCTGACCTTTGTGCGGGCGGGGATCTCCAGAGCCACTCTACTGAGACTGTTCTTTGCCATGGAAAGAGGAAACCACCACTCCGTCAGCTCGCCTTATGTGAGCCATATTTCCTGTAAGGCCTTCAGGCTGCAGCCTCTGTCTACACGGGGGACACTCACTGTGGATGGAGAACTGGTGCCCTATGGGCCTCTTCAAGCACAGGTTCATCCTTCCCTGGCTCGTCTCATCGTTGGTGACTCTGGAGTGAAGATTACCAGATTCTAATCGGGTGGTTGAGCTGATTGACAGATACAGCACTATACTGAATTATGTAATCTCTGCTGTCATCTATACTCTGAAAGAGCGTGGAGTATTAGAGAGACTTAAAATAGCCTGGATAGCAGAAACTGCTTTTCTGGGGTTTAATGAAAGGGATAACCCACGAGCCATGCATCATTGGAGCATGACTGCAGGGATTAATAGCAAATTTAAAAATGGATGAAAAATGCGCCTCATTGCACAGTTGTCGGATTACGCTCAGCATACCCTGAGAAGCATGAAAACTGCACAGCCTGGGATAGTAAGAGGGAAGAACGATCGAAtgtttatggagttttttttgtgtgcaggtGCATGTGTTGGATGTATACATAGAGGTATGCATGCAGAGAAGCACTACCTGAATTTTGCCTTTTAATGATAGAAAGAAATCAGATGAAAATCAGAGAAGGTTTTTCTTAAACATGAAATGCTATAAAATATACATTGAGATTCACTTGGCCCCAACCCTTTATCTTTAACCTGCTCTCTATGTCCAAACTTCCGTCCATGAAAAGAATGCCTTATCTGACACTGGACAGTACAGTTGTACCTTTGCCCTTACTTGTTCTTACTTATATaagaaacccaaatatattcaatcTCTGTCCACCTATCATAGTGTCCGTCCACTACATCAAAGCAAAGCTACGCTTATATACTTAGACATACTGGTAGACTCACCTACCTACTGTTATCTTTGAGCACACTGCTCTCCACTGTTTAAAGCATCAGTCGAGAAAAATATGGACACTTTAATGACCATTTTGTTCATGCAAGTTCCTCAATGTAGTGCAGCGAGATTAGCTTGTCAGGGTCATTACATAGTAGGAGCAATGGAACCGTTGAACGGTGACCATTACTGACATTTTAGCCAGTGGATGCACGATTATGATGTCAATGATATCACACTTTGCAACATATTGAACATACAAATGTCTGAACAAAGCAAGCTTCTTTGTCAGTGGTATAGTAATTAGTGCATTTTGTACAATAACTAGAGTTGAAGCAGCACAGAAAATCACAACACTAGAATCTATAGTAACTTTTAGATACATCTACAGCGCAATGCAGAATCTGATGCTTTGTTCTAGAAATGGGTGCGCTAGTATTAATAGCCTAgtctatatactataataaatgGATCACATTACATTCCTAGCCTGAAATTAATTAAATGTCTGAATTTAAACACTCAAAGCTTTTGAAAGGTAGGAGTGACTGACCAGGGCACAACATTAAAATCCAGCTATGTGTTATCACATCAGACTTGTGATCAAGAGATAAATCAGATGGATGTTAAACAACTTTCATTGTGAGAACGTATCCAGCATCAGAGCTGATCTGGTCAAATAAGTGATAGATTGGGTTTTACATTTAATTCTTGAAGCCCCTTCTTGGAATTGTCATGTCTTATAAGATTAATTTTTGTAATGTTATAATAAAACCTGCTGATATACTTGGTCTGGATAAAGGATAAATCATTAGCATGTGCAGTGTATCAATCAGTAGGATCATGTGCCCACTGCTTGGGTCATCATCAACCTACTGTATGCTTTGGTCATGCCTGGACAAATCAATGCCTTTGTATAATAAGCCTGTACATTCTGGCTGTTGATGATAAACTGTTAAAACCTGA

Function

NR:

description
sphingosine kinase 2-like

GO: NA

KEGG:

id description
K04718 SPHK; sphingosine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805856.1 True 5673 mRNA 0.47 8 22838405 22849527

Neighbor

gene id symbol gene type direction distance location
rpl18 rpl18 coding upstream 606 22832356 ~ 22837799 (+)
si:ch211-120k19.1 LOC103388283,LOC101483136 coding upstream 8050 22827807 ~ 22830355 (+)
kcnj14 kcnj14,LOC104949235,LOC102784483 coding upstream 53986 22767127 ~ 22784419 (+)
LOC120562542 LOC100712213,LOC102785254,LOC101485676,LOC102294439 coding upstream 97695 22733327 ~ 22740710 (+)
zbtb7b LOC104949237,LOC102209066,LOC102295659,LOC100711944 coding upstream 105964 22710139 ~ 22732441 (+)
cyth2 cyth2,LOC103136639,LOC106520542,LOC107088802 coding downstream 2831 22852358 ~ 22864843 (+)
zgc:158689 LOC104960461,LOC101078804 coding downstream 28504 22878031 ~ 22887878 (+)
tfpt tfpt,LOC102781997 coding downstream 43572 22893099 ~ 22898869 (+)
rbfox1l LOC104929735,LOC100696733,LOC102314559 coding downstream 118911 22968438 ~ 22982779 (+)
cdc42ep5 cdc42ep5 coding downstream 154845 23004372 ~ 23007320 (+)
G74769 NA non-coding upstream 582927 22255271 ~ 22255478 (+)
G74765 NA non-coding upstream 592642 22245489 ~ 22245763 (+)
G74764 NA non-coding upstream 595372 22242817 ~ 22243033 (+)
G74760 NA non-coding upstream 654368 22183783 ~ 22184037 (+)
G74737 NA non-coding upstream 708491 22129652 ~ 22129914 (+)
G75042 NA non-coding downstream 69225 22918752 ~ 22920103 (+)
G75045 NA non-coding downstream 75065 22924592 ~ 22925155 (+)
G75065 NA non-coding downstream 133365 22982892 ~ 22987322 (+)
G75069 NA non-coding downstream 144893 22994420 ~ 22994706 (+)
G75077 LOC104960445 non-coding downstream 167280 23016807 ~ 23018595 (+)
myh14 NA other upstream 18352 22785578 ~ 22820053 (+)
LOC120562539 LOC102295960,LOC100711672,LOC102209551,LOC101487210,LOC102786116 other upstream 132989 22689070 ~ 22705416 (+)
LOC120562537 NA other upstream 170520 22660479 ~ 22667885 (+)
arnt NA other upstream 212452 22610018 ~ 22625953 (+)
celf3b LOC104944900,LOC100708447,LOC107088821,LOC107379582 other upstream 252833 22559944 ~ 22585572 (+)
cnot3a cnot3 other downstream 50562 22900089 ~ 22911520 (+)
LOC120562293 LOC103360151,LOC102310947,LOC102785150 other downstream 221060 23070587 ~ 23083147 (+)
LOC120562612 LOC103367657,LOC105025867,LOC103136704 other downstream 641598 23491125 ~ 23494034 (+)
trpv6 LOC104929027,LOC104960406,LOC103388006,LOC107082237 other downstream 711321 23560848 ~ 23571243 (+)
casp2 casp2,LOC102795506,LOC103369458 other downstream 792028 23641555 ~ 23651496 (+)

Expression


Co-expression Network