LOC120562241


Basic Information

Item Value
gene id LOC120562241
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 8454764 ~ 8504452 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805857.1
gtgtgtgtgcgcgtgtttgtgtgtgtgtgtgcatgtcagagtgtgtgtgcggATGGTTCAGCAGTGAGTCTCCAGCTGCTGAGCGGAGCGGAGTGGAGCGCACTGCTCGGCGGACTCGTCCCCCTCGTTACGGCGGGTTTCCTCTACACCTTTTCCCGTGAAGGAGACTCTTTGGACCGCAGGACGCAGAAACATGGAGGCACAGCGCGGCCCTTTATCTATCCGGGGAGCCGTATCTTTCTTGCTCTTCACTGTGCTGCTGGAGAACGGGACTCTCGGTATGCCCCCTTTTATAGGTCGGGAGCAGCTTTGTAAGTTCTGCGATGTGGAGCCTTCCTCCTGCAATGGTACGGGAACCTGCACGACCAACTGCTCCATCACATCCATCTGTGTGGAATACAACGAGGTCTGTGTCTCTATCTGgAGGAAGAATGAGACCGGCTTTTCCATTGAAACTCTGTGTCATGACCCGTCCGTGCCTCTCTATGGAGTTCTGCTGGATGACTACAACAGCTCCACCTGTGTGATGAAGGAGAAGAACACGACGAGCGGGATGGCTCACTTCTGCTCCTGTAACTATGAGGAGTGTAACGACAACCTCTTATTCTCCCCCATTGTGGATCCAGCTCCGGATGATCCCTTGGTGTCGGTGATTCTGGTGAGCCTGCTTCCCCTGCTGGTGATGGGCGTTGTGGTTGTGGGAATGTTCTTCTGGTACCGAGCCTACCGACGACGCCTGAACCAAGAATGGGAGAGCAGCAAAAAGAAGCGCAAGCCAAAAGCTGGTGGGCTGGACTGCAGTGATGCCTGCGCCATCATGATGGATGACGATCGCTCCGACAGCAGCTCGACGCATGCCAACAGCCTGAACCACAACACTGAGCCACTGCCTATAGAGCTGGATCTGCTGGTGGGAAAGGGTCGCTTTGCCCAGGTATACAAGGCCAAGCTGAAGCAGACCACCTCGGATCAGTTTGAAACAGTAGCTGTGAAGATATTCCCGTATGAGGAGTACGCGTCCTGGAAGAACGAGAAGGACATCTTCTCCAACACAGATCTCCGACACGAGAACGTCCTCCACTTCCTGACAGCTGAGGAGAGGAAGGTGGAGAAACAGTACTGGCTCATCACTGCCTACCACCACAGAGGAAATCTACAGGAGCACCTGACGCATCATGTGATCAGCTGGGAGGAGCTGCAGGTGATGAGCATGTCTCTGGCCCGGGGTGTCGCCCACCTCCACAGTGACCGCCTCCTCTGTGGACGCCTTAAGGTGCCCATAGTCCATCGAGACCTGAAGAGCTCCAACATCCTGGTGAAGAACGACCTGACGCTGTGCCTCTGTGACTTTGGCCTAGGACTCCGTTTAGACAGCACTCTGTCTGTGGATGACCTGGCCAACAGTGGACAGGTGGGTACGGCGCGGTACATGGCTCCGGAGGTGCTGGAGGCCCGGCTAAATCTCGAGAACACAGAGTCCTTCAAACAGACCGACATTTACTCCATGGCCCTTGTGCTTTGGGAAATGACGTCGAGGTGTGAAGCTATTGGAGAGGTGAAGGACTACGAGCCTGCGTACGGCTCTAAAGTGCGAGAGCACCCCTGTGTGGAGAGCATGAAGGACAACGTgctgagagacagaggaagaccAGAGATCCCCGACACCTGGCTCAGGCATCAGGGCGTGGCGGTGATCTGTGCGACCATCATGGAATGCTGGGACCACGACCCAGAGGCCCGACTCACCGCCCACTGCGTCGCCGAACGCATCTCCGAGTTGGAGGACGAGATGGACAAGCTGTCCAGCCGCAGCTCCTCGGCAGAGAAGATCCCTGCGGAGCTGAAGATCCCGATAGAGGTGGAGATCCCGGGAGAGGAGGTGAAAATCACAGAAATACAGGACATCATAGCTGTGGACTGCTCCGTGAGCGATGAGAAGTGAGACCAAGTTTTACATCTCCGTGGACTCTGTGGGAGATTTTTCTGCTTTGATGAAATTGAAGACTCGGCCGTGGTGTTCTGGAGCTGAGCTCCTGCATCCAAAGACTTTGAATTGAGTCCCTGGGTCATATCATATTCTAGCCCAGCAAAGTGGGTCTCTGGGTGAGGCTTTTGGTCTTCACCGCTTCtaaaatgtaacaaattgcCTTAATCAGCTAAAGAGCCAAAAAGTTAACTGGAAGCTTCCAAAGATGTGCTGAACATGGAGACAGTATTTCGTTAATAGTCAAACAGGCTCTCTAAGTCACTGTCTTTATGAGAAATGAACAGGGCAATAACTATTAAACCAAAGACATTTGATGTGCACTTTACAATGTGATACTTATGCATTACAGACTTTTGTTCATGCAGTCTAACATTTTGGAGTTAGGGGCAGTTTGTACCAaaagtgtctttgtgtgtcccACTTTGAGCCAAAGTGTCAGCAGAGATATTGCCTTAACACTAATGATGCTGTGGACTTCATCCTTGCCAGCAGGAATCCAAAGgaatgtatgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttacccaGCTATACTCAAACCTTGTTTGCCAGATGAACAAGCACAATGTACATAGAGACAATAACTGTACATAAGAGACTAATCAACCAACAAGGGAATGTAATCCAACTACTTATCTTTCAATATCGACAGGGAACTGAGGAGTGTgccaaagttgtttttttaccctGCCTTACATACAGTTTGTGTCATTTGTAAAATATTGTAAATCTTATATGAATTAAAGATATTTCTGCATTCTA

Function

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0023014 signal transduction by protein phosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function
GO:0005026 transforming growth factor beta receptor activity, type II molecular_function

KEGG:

id description
K04388 TGFBR2; TGF-beta receptor type-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805857.1 True 2864 mRNA 0.51 10 8454764 8504452

Neighbor

gene id symbol gene type direction distance location
pomgnt2 pomgnt2 coding upstream 70144 8364356 ~ 8384620 (+)
zgc:114181 LOC104932954,LOC102799802,LOC101469313 coding upstream 255903 8187287 ~ 8198861 (+)
rwdd1 rwdd1 coding upstream 333438 8114521 ~ 8121326 (+)
LOC120561725 fam26e,LOC103478772,LOC106963711 coding upstream 345399 8104864 ~ 8109365 (+)
LOC120561897 NA coding upstream 349915 8104249 ~ 8104849 (+)
LOC120562991 LOC103388880 coding downstream 583732 9088184 ~ 9101502 (+)
popdc3 popdc3 coding downstream 611259 9115711 ~ 9123087 (+)
bves bves coding downstream 623398 9127850 ~ 9144754 (+)
hace1 hace1 coding downstream 643163 9147615 ~ 9190089 (+)
ascc3 ascc3 coding downstream 1502823 10007275 ~ 10200405 (+)
G71334 NA non-coding upstream 140003 8311851 ~ 8314761 (+)
G71326 NA non-coding upstream 144000 8227835 ~ 8310764 (+)
G71325 NA non-coding upstream 218046 8216677 ~ 8236718 (+)
G71323 NA non-coding upstream 254856 8198953 ~ 8199908 (+)
G71305 NA non-coding upstream 321977 8132249 ~ 8132787 (+)
G71348 NA non-coding downstream 2407 8506859 ~ 8514393 (+)
G71421 NA non-coding downstream 44080 8548532 ~ 8548790 (+)
G71424 NA non-coding downstream 48077 8552529 ~ 8555278 (+)
G71429 NA non-coding downstream 89581 8594033 ~ 8620339 (+)
LOC120561615 NA non-coding downstream 142512 8646964 ~ 8647709 (+)
ano10a ano10 other upstream 145020 8283380 ~ 8309744 (+)
G71309 NA other upstream 332525 8121601 ~ 8122239 (+)
G71147 LOC103388722,LOC104941093,LOC103369890 other upstream 653384 7731022 ~ 7801380 (+)
znrf2b znrf2 other upstream 954582 7456767 ~ 7500182 (+)
cdk14 cdk14 other upstream 1162329 7039163 ~ 7292435 (+)
G71470 rrp15,LOC106584165,LOC106605018 other downstream 244491 8748943 ~ 8751443 (+)
LOC120561899 LOC104959271 other downstream 255594 8760046 ~ 8776508 (+)
trnay-gua_1 NA other downstream 305899 8810351 ~ 8810439 (+)
trnay-gua_2 NA other downstream 306282 8810734 ~ 8810823 (+)
trnay-gua_3 NA other downstream 306657 8811109 ~ 8811197 (+)

Expression


Co-expression Network