LOC120562277


Basic Information

Item Value
gene id LOC120562277
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35849473 ~ 35856736 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805922.1
AGTCACAATCTTGAAGCAGAAGTCCAGTAAAGACCATCACAGCGGAGCAGACGCCCTCCTAACAGCTCTCATACAGGACTGCAGCAGGACTTTAAACATGTTCAGGATGGACAGAAATCTACAGGAGGAAATTGAGGAACTcaaggaagaagaagatgacTATGTTAATGTACAACCCTGGACTATGGATAAAGTGGCAGCTCGTCGAAACCAGAGGTTTTGCTGCTTCTCTCAGTCTTTTCCACTGATAGCAGTGTGTTGGCTGATACTGTTGGTCATCATGGGCCTCTGTATCTACTTTGCTACATTAAGTCATGAGAGGGAAAGTGAGCTGATGGCTGCCAATCGCAACCTGACAAACCTCAACGACAAACTCAACGTCTTAGAAAACCAGATCACAAACCTGACTGCAGTAAACCAGGAGCTGGAGATGGAGAGGAACAACGTAATAAGACCGATACAAATCATGGAGGCAAACTGGAACAAACTCAACGCCAGTCGAGTTAAGTGGACTATTGATGTCTACTGCCACAACGGGAGACAGTGTAAAGCTTGTGAGCAGGGCTGGGAACTCTTCCAGTCCAGCTGCTATCTGATTAATCCTTCTTATGGGAGAACCTGGGAAGAAGCTCGAGAAGTCTGCAGAAGACAGAGTTCAGATTTGGTTGTTGTACATGATGAAGATGAACAGAATGTACTCAATTATTCCAGAAGGTACATATACGGGTACTGGATTGGCCTGAGAGCTGAAGGAGGGAGATGGAAGTGGATCGATGGAAGTGATCTGACTCAAAGTGACTGGATACAAGACCATCCACCACCTGCTGACGGTCAGTGTGCAGTTTCTGTCAGGTCCAGATGGAGATCAGTGAGCTGTGCTGATAGAAACGCATGGATCTGCAAAAAGAAGGCTTTATCTTTTTAAACATTACAGTCAGACTTGAGAAATTTACTGGATACTCTGCATGATAATATCAACTTGCTTCAGAAATATCAAACCGTGAAGACCTCTACTTCACAATTTAAACGTTTTGTTTTCATGAATAAAAATGCTAATTATTTATCTTTTGAAAAAGAGAATATAAATCTTCACAGTGAATTATTTTTCAAAgcttttgtgtgtctctgaatATAGACGCTCAGATGTGTTGTATAGATGAATTAGATATTGGATAATATTGGTATGGCTACTGACAATCTGAGAAAAATACAATGGCTGGCCTGAAGGCTAAAGACTAAAGACTAAACTGTTAACTATTAATAACTCTGAATGTGCTTTTGTTCTCCTTTGTTAGAGATGTGATGTTTATAATTTGTATATCAGCAGATTGatgagagggacagacagactgctcagcttcctgtttcctgtgtgaCAGGTTATATTGTTGCTACTCATGAGCCAAAATTGAGGCACAGCatcacttgtttttcttcagcaTTTAATGTAAATCATATTAATATGTAGAGTGTTTTATCTATCTGGAAGCAAAGTCCTGTTTCATTACATTGAATTAAACGCTGTTATGCATTGTT

Function

GO: NA

KEGG:

id description
ko04145 Phagosome
ko04670 Leukocyte transendothelial migration
ko04380 Osteoclast differentiation
ko05140 Leishmaniasis

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805922.1 True 1536 mRNA 0.41 7 35849473 35856736

Neighbor

gene id symbol gene type direction distance location
LOC120562274 NA coding upstream 219392 35621760 ~ 35630081 (+)
ccne2 LOC103358269 coding upstream 302725 35535047 ~ 35546748 (+)
tp53inp1 NA coding upstream 321464 35508333 ~ 35528009 (+)
nagpa NA coding upstream 359996 35448568 ~ 35489477 (+)
LOC120561699 LOC102800167,LOC102194503,LOC101481262,LOC104936483,LOC103358273 coding upstream 486952 35357254 ~ 35362521 (+)
LOC120562454 NA coding downstream 18391 35875127 ~ 35883935 (+)
LOC120562276 NA coding downstream 39614 35896350 ~ 35900892 (+)
LOC120563160 LOC104935873 coding downstream 167890 36024626 ~ 36026571 (+)
dek LOC102312342,LOC102210945 coding downstream 235463 36092199 ~ 36110132 (+)
LOC120563175 NA coding downstream 254314 36111050 ~ 36129242 (+)
G78674 NA non-coding upstream 27832 35821290 ~ 35821641 (+)
G78669 NA non-coding upstream 35866 35775272 ~ 35813607 (+)
G78662 NA non-coding upstream 130522 35717952 ~ 35718951 (+)
G78655 NA non-coding upstream 157828 35648530 ~ 35691645 (+)
G78653 NA non-coding upstream 206120 35642906 ~ 35643353 (+)
G78705 NA non-coding downstream 51290 35908026 ~ 35908235 (+)
G78706 NA non-coding downstream 52084 35908820 ~ 35909069 (+)
G78707 NA non-coding downstream 71704 35928440 ~ 35928896 (+)
G78716 NA non-coding downstream 106037 35962773 ~ 35963505 (+)
G78736 NA non-coding downstream 177612 36034348 ~ 36034652 (+)
LOC120562275 NA other upstream 75485 35743295 ~ 35773988 (+)
G78594 NA other upstream 440791 35405375 ~ 35408682 (+)
LOC120562567 NA other upstream 992941 34839157 ~ 34856532 (+)
G78200 NA other upstream 1305094 34529355 ~ 34544379 (+)
sh3bp5b sh3bp5,LOC102783023 other upstream 1806825 33990542 ~ 34042648 (+)
LOC120562279 NA other downstream 9106 35865842 ~ 35888172 (+)
G78759 NA other downstream 254115 36110851 ~ 36190839 (+)
G78772 NA other downstream 401424 36258160 ~ 36350995 (+)
LOC120563181 LOC107378893,LOC103370072 other downstream 535516 36392252 ~ 36465230 (+)
LOC120562456 dennd4b other downstream 724229 36580965 ~ 36670029 (+)

Expression


Co-expression Network