ube2s (ube2s)


Basic Information

Item Value
gene id ube2s
gene name ube2s
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23063802 ~ 23070370 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805954.1
CTGCCCATTGGTCGGTGGTAATAGGTTAAACTGATGATCGTATTTTTGTTCCTGTGTCAacgaaaagaagaaaagaagagtaGCCAGTGAGACCCGGCTAAGTTTTCATCAAagatagttttttttcaaacattaagTAAAGGACTCTTCAAATCTCAAACCAGCCAAACATCCAACGCCTTAGCAGAACCCCTTTTGAAGATGAACTCCAATGTGGAGAATTTGCCTCCTCATGTTCTTCGCTTGGTCTACAAAGAGGTTtcagctttagcagcagacccGCCTGAGGGTATCAAGATTTATCCCAGTGAGGAAGACATAACTGAGCTACATACAGCCATCGAAGGACCGGAGGGAACTCCGTTTGCTGGTGGCGTTTTCCGAATGCGTCTGGTCCTCGGGAAGGACTTCCCTGCGGTTCCACCCAAGGGGTATTTCCTGACTAAGATTTTTCACCCCAATGTGGGTCACAAGGGAGAGATCTGTGTCAATGTGTTGAAGAGGGACTGGAAGGCAGAACTCGGCCTCAGACATGTCTTACTTACAATAAAGTGTCTTCTCATCCATCCGAATCCAGAGTCTGCTCTGAACGAAGAGGCCGGGCGTTTGCTGTTAGAGGACTATGCAGAATATGAGTCCCGAGCTCGTCTGCTCACAGAGATCCACGCCATGGGGGGGCACGGCGGGACCTCTGGGGCACCTCAGGACCCTAATGACGGCCCACAGCCGAAGAAGCATGCAGGCGACCCCATGAAGAGAGCGGGACCCAGTGCAGCAGCTGTGCCAGCAGCTCTGGGTAACGGAGCTAATGGAGCCAGTACTACCACCAGCAATAGCAACAGCAGTAGCACTAATAATGTAGCAGGGAAAAAGAAAGCAGATAAAAAGCGTGCATTGAGGCGACTTTAATACCTCAGCtaaattctgtgtgtgtgagtgcgagaatgtgtaaatataaatattgaaGTGTGCTGACAATGTTTTTGTTCCCTTTTTCTGACTCTTTCTACCACCTGTCCAGACTGTCCACAACTTGTGTCTTGCCACCAGTTTGTCCTGTTGGCATTACAGGTTTGTTAATTATTTCCATACCTAAAGACATAATGATAAAATgtttgttcctcttttaaagGAAAGACAACACCTTCACTGCAGAAATCATGCCATCTGTTGTATTTTGCTCTTGGCCTAGTGTGTATGAATTATACAGGGAATGGGTTTCACTGTGCAAAATATGGCCTCTAATGTCTGTCCACTAATGAGACAAAACTATTATTGTCTCAGACTTGATATCAGCTCTTTTTAAAGTGTTTCTTGGCAAATGCTGCTGTGATGGTACTGTGTACTGCTCAGCCAGGCTCACTTATGAGTCCAAACCAGGATGTTACTTTAATTAAAGTCAGGTTTTCAAATTGAACTCAAAGGAAATAATAAAGAAGTTGCTAAATAATTGTGCACAAAGTCGGTGGGTTCACTTTTGGGAGAGAAATATTGTCAATATCACGCAAAATTGTAACATCTTTTTAAATAGTATTTTTCATATTGTGATCTGAATGATACAGGTATGGAAAAAGTTGACAGTGGAGTATAAGAGGTCTGTCGTgttctgtaatttttttttattttatttttctaaaattgtTTCACTGTCCAGTATTTTCAGAAGTTGTTTAGATTGACATGTTCATATTCAGCTGTCTTGTGGTTGTGTGAAGACCTAGATCAGTGGCTGTAAGGGAACACAGGGTGGGTTGCCAGACTACTTTTTATAAAACCAATGAATCGCCTATTCTCTGTATTAAGCATAGATTGGTGTGACTCGCTTAACCTACCCCTGATTCCCTACAAAGCAGTATGTGCTCTCAGATAACCAGCTCCCCGACAAGCCATGTGGGTACCTGAGAAGACATCTGTAGGAGAACTTCCACGTTTGATAGAATTTGTCTCCCCACCCGTTGCACTGGCAGGGTTTCCGGGGCAGGTTTTCTCTTTGTACTAAATGCATGCGGGGCCTACATTTCCCAAGGAAACACACTGAAGCGCTGTCTTAATTTGGACGGAAAATGTGCCTCTGAATCTCTGTCATTGTGCACTTGGCTGGATATTTTGTGtccattttaaattatttaaattaaacattgaaATACAAGAAGTGAAATTAAAAATGAG

Function

symbol description
ube2s Predicted to enable ubiquitin conjugating enzyme activity. Predicted to contribute to ubiquitin-protein transferase activity. Predicted to be involved in several processes, including cellular protein metabolic process; free ubiquitin chain polymerization; and positive regulation of ubiquitin protein ligase activity. Predicted to act upstream of or within cell division. Predicted to be part of anaphase-promoting complex. Predicted to be active in nucleus. Orthologous to human UBE2S (ubiquitin conjugating enzyme E2 S).

NR:

description
ubiquitin-conjugating enzyme E2 S

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10583 UBE2S, E2EPF; ubiquitin-conjugating enzyme E2 S

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805954.1 True 2169 mRNA 0.43 4 23063802 23070370

Neighbor

gene id symbol gene type direction distance location
ttyh1 ttyh1,LOC102785918 coding upstream 4838 23036899 ~ 23058964 (+)
leng9 NA coding upstream 27733 23028718 ~ 23036069 (+)
cdc42ep5 cdc42ep5 coding upstream 56482 23004372 ~ 23007320 (+)
rbfox1l LOC104929735,LOC100696733,LOC102314559 coding upstream 81023 22968438 ~ 22982779 (+)
tfpt tfpt,LOC102781997 coding upstream 164933 22893099 ~ 22898869 (+)
si:dkeyp-69b9.6 znf628,LOC100697888,LOC102784474,LOC103360149 coding downstream 16805 23087175 ~ 23096445 (+)
dbpb dbp,LOC104960436,LOC103360148,LOC106963973 coding downstream 28919 23099289 ~ 23108067 (+)
ntd5 LOC104960434,LOC102309919,LOC102195595,LOC100698418,LOC101479430,LOC102783920 coding downstream 38411 23108781 ~ 23117768 (+)
LOC120563112 NA coding downstream 47559 23117929 ~ 23123313 (+)
si:dkeyp-69b9.3 LOC104960480 coding downstream 58724 23129094 ~ 23141752 (+)
G75077 LOC104960445 non-coding upstream 45207 23016807 ~ 23018595 (+)
G75069 NA non-coding upstream 69096 22994420 ~ 22994706 (+)
G75065 NA non-coding upstream 76480 22982892 ~ 22987322 (+)
G75045 NA non-coding upstream 138647 22924592 ~ 22925155 (+)
G75042 NA non-coding upstream 143699 22918752 ~ 22920103 (+)
G75155 NA non-coding downstream 73572 23143942 ~ 23144165 (+)
G75192 NA non-coding downstream 257872 23328242 ~ 23328629 (+)
LOC120561704 NA non-coding downstream 261470 23331840 ~ 23332756 (+)
G75196 u2af2 non-coding downstream 269476 23339846 ~ 23342677 (+)
G75197 NA non-coding downstream 276470 23346840 ~ 23350767 (+)
cnot3a cnot3 other upstream 152282 22900089 ~ 22911520 (+)
myh14 NA other upstream 243749 22785578 ~ 22820053 (+)
LOC120562539 LOC102295960,LOC100711672,LOC102209551,LOC101487210,LOC102786116 other upstream 358386 22689070 ~ 22705416 (+)
LOC120562537 NA other upstream 395917 22660479 ~ 22667885 (+)
arnt NA other upstream 437849 22610018 ~ 22625953 (+)
LOC120562293 LOC103360151,LOC102310947,LOC102785150 other downstream 217 23070587 ~ 23083147 (+)
LOC120562612 LOC103367657,LOC105025867,LOC103136704 other downstream 420755 23491125 ~ 23494034 (+)
trpv6 LOC104929027,LOC104960406,LOC103388006,LOC107082237 other downstream 490478 23560848 ~ 23571243 (+)
casp2 casp2,LOC102795506,LOC103369458 other downstream 571185 23641555 ~ 23651496 (+)
LOC120563204 NA other downstream 697863 23768233 ~ 23813408 (+)

Expression


Co-expression Network