dbpb (dbp,LOC104960436,LOC103360148,LOC106963973)


Basic Information

Item Value
gene id dbpb
gene name dbp,LOC104960436,LOC103360148,LOC106963973
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23099289 ~ 23108067 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039805957.1
ATTTGCGCCTTTGCATTTTTATTATGGGCAGAATTCTTACTCAGATCTGACTATCCCTCCCACACTGGTCCTCTGAGAATAACTGCTTGATCTATTGAAGATTTTTTTTGACACCATTCAACTGCAATGgaatatttcaatgaaaataattctGCAAGGAAATAAGGAACTCTGCACAACCTAAAGTGAAAGtgATCCAGCATACTTGTCCTAttggctcttcggtcagtttaCCACGCCCCTTCAAGTGCCCCCAGTATCTTTCTACGACCCCATCTGGCCCAGGATGTCCAGGCAGCTCTCTCAGCTTCCGAACCCCGACCTCCCAGCTGGCGCAAGCCCACAGTTTGGAAGTTGTACCCAGCCTGCGGGCTCCCTCACAGCGGGGCATCTCACAGGTCTTAAATCCCTCCTGCAGCACCCCATAAAGGGAGACCAACGTTTAAAAGCATGTGATGCAAAAGATAAAGAGAGGCTAGATGTTGATGAGGACTCCATGGGAGTGTGCCCCATTAGGAATGGCAGTGGAATAGGCAACAGTAATAGCAGTAATGGCtgtggaggaggtggtggaggtGGAGTTGGAGGAGGAAATTTCAGCCAGTTCTTGGCGCCCCTCTTGTGGGATCGCACCCTTCCTGCAGATGGGGGCCTCTTCCAGCTTCAGTACATGGACTTGGAGGAATTTCTGGTTGAAAATGGAATGGGCAACATGCATAACAACAACAGCTCCAGTTCAGCCCAGATCCCCTCACAGAGCTCCCCGTCAGCTGTGCCCAATCAGAGCTCCCAGTGCCTACCGCCCTCATCCCCACCTTGCTCTTCGTCTTCGTcaccttcttcctcttcttccccgTCGCTCATTGGCTTGGAGGTGGCTCAGCCGCAGAGCCTTGGAGGAGGAAATGACTGTTTGCATGGGAGTCAGACAAGTATGAATGATTCCTGTGAGTCGCCCTGTtcttcctcctcgtcctcctgtCCTCCTCTGCTAACGCCCACGGACAGCGGGCCAGATGGAGTCGGGATGTTTGACATAGATTCTTCAGACATGGACATGTCCAGCCAGCCGAACTTTGACCCCAGGAGGCACTCCTTCAGTGAAGAGGAGCTCAAGCCACAGCCGATGATCAAGAAGGCCCGCAAGATCCTGGTGCCTGATGGCTTGAAGGATGAGAAGTACTGGACCAGGAGGTATAAAAACAATGAAGCAGCCAAGCGTTCTCGAGATGCTCGGCGTCTTAAGGAGAACCAAATATCCGTGCGTGCCGCCTACCTGGAGAGAGAGAACGCCGCGCTCCGTCAGGAAGTGGCCGAGATCCGGAAGGAACTGGGCCGCTGTCGCAACATCCTTAGTAAATACGAGAACCGTCTTGCTGACCAGTGATGAAGACGTGGAGCAAAATCAGGAAGAGGAGAAATTTAAGATGGATTAAATTTAAGACTCTGAATTCTTGGGGTGACACGAAGGACAAAATGGGGTTCAAGaaaatggtgatgatgatgatgatgatgatgaggaagaTGATGATTTATGATGATGAATGTATAAGACAAGGAGAAGACTTGTGTATTGAAGCtcaggtgtcttgttttgttgAGGTGTCAGCTCTTAAAattgaaagatggagagaatAATTTAACAGATGAAAAGTATGTGACTTTTAAGAGTTTTGTTATTGGAGAattgtatatttttataatacTTGAGAAAAATTAGACAGAGAGAAAATTTGGAGAATAATTTTGTATATTTTCTACATAGAGATGGGGGAAAGCTATGGTAAAAATCTTTTTATTATAGATGAGTCAGGAGATGTTTAACAGGTGGTCAGCCATCGAAGGGTATTTTTCGACTTGATTATTGTAGTCAGGATGCTGCAGCAGGACGCATGTAACAATTGTAATATAGAGAGCAAAAATTATCTTATAATCGTATACTTCAATATTTTTGtggattttattcatttttttcctcttatGTTTCTGTCACTGGGAATGGGCATGCTAGAGAGAGACGAAAGGGGAGACAGCATGGAAACAGTCCAGCACTATCTTCAACACTTGTCTTGTGCgttctttttttaatagaacaacttcatcctttttttcttttttgtttgaatTAACTCAAGTTCCccaacatttttagttttttgtactTTGAGCTTAACTTTATGCCATTGGCCATCTTTCTCTAGCCTATGCTTTTATCTTTGACTCAATCTCCTTTTCTCTATCCCAGTTGAGTGCTTGTAATCTACTCTGGTGTCTTGTATCTCACCTAAGCTGGTGAAAGCCTGTTGTGATGCCCTGGGTAACTCTGCTCCCTCTTGATCCTCTCTTTTGAATTGTTGGGACatttctcttcctctgtttctATATCCAACTGCGCTATTTCTGTCCGCTTGCTCTTAACAGCCAATCCCCTCACAGTTATGTGCAAACTCTTCCCATAACATGTTGTCCCCGTGTCTCTCTTGTACCTCGGCGGTACATTGAGTAGTTCAATCTCAGTGTTGTAACGTATTCTGAAATAGTTATCAATCTTCCCAATAAAACGCACATCGTTACTTTACTGTACTTTATGAACACAGTTTAATTAGCATTATTACCGGGGAGAAATGTTGTATATTGGATAGGCCTATACTATTTTGTGTATTTGATGTATTCCAGGAGATGGGATGAACACCCCCATTGAGTGGAATGGTGTTAATTTCTCAGATTTCTGGGAGAAATAAAAGCCAAAATTTCCTATGTTCATCCACAAAGCTTGTTCCTATTTAGTGCTTTTTTTCAATACTGTTCCTTCCTTACTGTTTACTCCTGTTACTACTCTTTACTTTTAACTGTATCTATAAACTTCTCTTTTTTTACCCACAACAACTACACACGGGGCATGGTACACTATGTTCCTGGGGAGGGATGACTAGTAATAGAGTGTGATTTTAATCCCCTTAACGACCATGATGAATAGTTACCATTACtgctattattattgttatgatGATTATCCCTCTTGTTGTTGCTGTTCTATATTATTGAATTATTTTCCTTTTAGGACAAACATGATCTGTTGCACCTTGAAACATCTTTGATCTTCAGTGTTCCTCAGAAAGACTAttcaaatggagaaaaaaaaccctcACTCTGCAATTTGCATCCTGTCTCATACCCCTCCAGACATTACTCACTTCTACTATGGACACTACTGCCACCTTGGGTTTTTTGACCATGGATTTCACAAGCGTGGCTCAATAACTTGAACATGATATTCATGCAGACTTACTTTACCTTTTGTGATGACCTCTTCTGTTCCGCAGCAGTGTACAGAATATGCACACTATCAATATGCTCCTTGTTGGTTTATTTCAGCCTTTATCACCTCAATCAGTAATTGTTTGCTCTCCCAACAGGATTTAGTCTCTTATATCCTCACAGATGTGGTTGATAAATCTTTTTAGCGACTCTAATTGAACTATAACTGCCCTGCTGCATCAGTGGTGGTCCATGGTGCCCAGCCCACTCAGTGCTGGTTGTTTGGATAGAGTCAAGATTTTTCCAAAAACACCAATAAAAGATTGTTCTCATTCACTA

Function

symbol description
dbp Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to be part of chromatin. Predicted to be active in nucleus. Implicated in osteoporosis.

NR:

description
hepatic leukemia factor-like isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039805957.1 True 3597 mRNA 0.43 5 23099289 23108067

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-69b9.6 znf628,LOC100697888,LOC102784474,LOC103360149 coding upstream 2844 23087175 ~ 23096445 (+)
ube2s ube2s coding upstream 28919 23063802 ~ 23070370 (+)
ttyh1 ttyh1,LOC102785918 coding upstream 40325 23036899 ~ 23058964 (+)
leng9 NA coding upstream 63220 23028718 ~ 23036069 (+)
cdc42ep5 cdc42ep5 coding upstream 91969 23004372 ~ 23007320 (+)
ntd5 LOC104960434,LOC102309919,LOC102195595,LOC100698418,LOC101479430,LOC102783920 coding downstream 714 23108781 ~ 23117768 (+)
LOC120563112 NA coding downstream 9862 23117929 ~ 23123313 (+)
si:dkeyp-69b9.3 LOC104960480 coding downstream 21027 23129094 ~ 23141752 (+)
LOC120562649 LOC102193556,LOC102782376,LOC102306605,LOC101481152,LOC103478060,LOC108235494 coding downstream 97881 23205948 ~ 23256664 (+)
prkcg LOC100699493,LOC102194125,LOC102306909,LOC102782677,LOC101481445,LOC101164921 coding downstream 161056 23269123 ~ 23286952 (+)
G75077 LOC104960445 non-coding upstream 80694 23016807 ~ 23018595 (+)
G75069 NA non-coding upstream 104583 22994420 ~ 22994706 (+)
G75065 NA non-coding upstream 111967 22982892 ~ 22987322 (+)
G75045 NA non-coding upstream 174134 22924592 ~ 22925155 (+)
G75042 NA non-coding upstream 179186 22918752 ~ 22920103 (+)
G75155 NA non-coding downstream 35875 23143942 ~ 23144165 (+)
G75192 NA non-coding downstream 220175 23328242 ~ 23328629 (+)
LOC120561704 NA non-coding downstream 223773 23331840 ~ 23332756 (+)
G75196 u2af2 non-coding downstream 231779 23339846 ~ 23342677 (+)
G75197 NA non-coding downstream 238773 23346840 ~ 23350767 (+)
LOC120562293 LOC103360151,LOC102310947,LOC102785150 other upstream 16142 23070587 ~ 23083147 (+)
cnot3a cnot3 other upstream 187769 22900089 ~ 22911520 (+)
myh14 NA other upstream 279236 22785578 ~ 22820053 (+)
LOC120562539 LOC102295960,LOC100711672,LOC102209551,LOC101487210,LOC102786116 other upstream 393873 22689070 ~ 22705416 (+)
LOC120562537 NA other upstream 431404 22660479 ~ 22667885 (+)
LOC120562612 LOC103367657,LOC105025867,LOC103136704 other downstream 383058 23491125 ~ 23494034 (+)
trpv6 LOC104929027,LOC104960406,LOC103388006,LOC107082237 other downstream 452781 23560848 ~ 23571243 (+)
casp2 casp2,LOC102795506,LOC103369458 other downstream 533488 23641555 ~ 23651496 (+)
LOC120563204 NA other downstream 660166 23768233 ~ 23813408 (+)
LOC120563047 vamp1,LOC104928996 other downstream 765842 23873909 ~ 23879415 (+)

Expression


Co-expression Network