tfpt (tfpt,LOC102781997)


Basic Information

Item Value
gene id tfpt
gene name tfpt,LOC102781997
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22893099 ~ 22898869 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806044.1
ATAGGTGTATCGACGAGAATGAGAAGGACGGGCGGCTGCTCTTGCTTCGCTTTACGTTTGATTTAAGCAAAACATGCTCTTAGCTGAACTGACGGTGTAGATCATAGACTAACACACAGTCAGTGAGTAAATACTGACCGTTTGAGACAGTCAGTTTGTAGTTGAGTTTTAAACCCGCAGGACACTGCTGCTGACACCAGTGTTTTTGGACTTATCTTGCAGAAATATGATGGAGGATTTCTCTGGTTTGGCTCTGCCTCCTCTGTTTGGAGGACACATCCTGGAGGCAGAGCTGGAGCCTGGAGGTGTGGAGCTGGGACCGGGAGAGGTGGAGTTGGGCCCGGGAAGCAATGAGCTGCTGGAGAGTACAGcacaggaggatgaagagagaaGAGCTCTTGATAAgaggaaatatctggctctgaACAGGAGATGTAAAGACATTGAACAGGTGAATCAGAAGATTCTTGGTCGCCTTCATCAAGTACAAAGAATTACACGGCGCTTGAAGAAGGAGAGACGGTTTCTCATGAAGACTTTAGATGCTCATGGAGATGACTACAGAAACGCCCAGCTCACTATACTTCTAGAGGATGAGTCTGGAGCCCAATTAGATCCTGCTGATGGAGTGGAGGATTACCGGCTCAATGGTGTGTCTTGTTCCACTTTGTCTCCAGCATTGCATCATGCTGCCGGACCAAAGCGGAGGAGGCACCGAATTCCACGGCAAGAAAGCGATAAAGACCAacagACTGAACCAGACATGTCAGTGTTGGCAGAGACACAGTTTGGAGAAATGCCCAGCCCAACCTCTCTGTCTCACTGATAATTGCACTGCAGCCCtagatatgatgatgatgatgatgatgatgatgatgaagaagcACCCAGATTCTCTAAGTTTTCAGTAGATACGCTGCCTCTGTTCAGCCagggttttggactgtttgtAGTTTTACTTGAACATTGTGAACAGATTGAATTAATGTAAGGTAAAATAAGATGTTTTTCACCTGGGTATTAGGGGTGCATGATTCAGAAAATATCACAATCCgatattgatttttaggctcaagattcgattcaaatcGATTTTCCATTCAAACACGATTctcgattaaaaaaacaattcacagtatgtaaatgtagttacttttcccatgtgattgcagtagacatacaattaaaaaaaaa

Function

symbol description
tfpt Predicted to act upstream of or within apoptotic process. Orthologous to human TFPT (TCF3 fusion partner).

NR:

description
PREDICTED: TCF3 fusion partner

GO: NA

KEGG:

id description
K11670 TEPT, INO80F; TCF3 fusion partner

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806044.1 True 1194 mRNA 0.44 7 22893099 22898869

Neighbor

gene id symbol gene type direction distance location
zgc:158689 LOC104960461,LOC101078804 coding upstream 5221 22878031 ~ 22887878 (+)
cyth2 cyth2,LOC103136639,LOC106520542,LOC107088802 coding upstream 28256 22852358 ~ 22864843 (+)
sphk2 LOC104960464,LOC103388269,LOC106096428 coding upstream 43572 22838405 ~ 22849527 (+)
rpl18 rpl18 coding upstream 55300 22832356 ~ 22837799 (+)
si:ch211-120k19.1 LOC103388283,LOC101483136 coding upstream 62744 22827807 ~ 22830355 (+)
rbfox1l LOC104929735,LOC100696733,LOC102314559 coding downstream 69569 22968438 ~ 22982779 (+)
cdc42ep5 cdc42ep5 coding downstream 105503 23004372 ~ 23007320 (+)
leng9 NA coding downstream 129849 23028718 ~ 23036069 (+)
ttyh1 ttyh1,LOC102785918 coding downstream 138030 23036899 ~ 23058964 (+)
ube2s ube2s coding downstream 164933 23063802 ~ 23070370 (+)
G74769 NA non-coding upstream 637621 22255271 ~ 22255478 (+)
G74765 NA non-coding upstream 647336 22245489 ~ 22245763 (+)
G74764 NA non-coding upstream 650066 22242817 ~ 22243033 (+)
G74760 NA non-coding upstream 709062 22183783 ~ 22184037 (+)
G74737 NA non-coding upstream 763185 22129652 ~ 22129914 (+)
G75042 NA non-coding downstream 19883 22918752 ~ 22920103 (+)
G75045 NA non-coding downstream 25723 22924592 ~ 22925155 (+)
G75065 NA non-coding downstream 84023 22982892 ~ 22987322 (+)
G75069 NA non-coding downstream 95551 22994420 ~ 22994706 (+)
G75077 LOC104960445 non-coding downstream 117938 23016807 ~ 23018595 (+)
myh14 NA other upstream 73046 22785578 ~ 22820053 (+)
LOC120562539 LOC102295960,LOC100711672,LOC102209551,LOC101487210,LOC102786116 other upstream 187683 22689070 ~ 22705416 (+)
LOC120562537 NA other upstream 225214 22660479 ~ 22667885 (+)
arnt NA other upstream 267146 22610018 ~ 22625953 (+)
celf3b LOC104944900,LOC100708447,LOC107088821,LOC107379582 other upstream 307527 22559944 ~ 22585572 (+)
cnot3a cnot3 other downstream 1220 22900089 ~ 22911520 (+)
LOC120562293 LOC103360151,LOC102310947,LOC102785150 other downstream 171718 23070587 ~ 23083147 (+)
LOC120562612 LOC103367657,LOC105025867,LOC103136704 other downstream 592256 23491125 ~ 23494034 (+)
trpv6 LOC104929027,LOC104960406,LOC103388006,LOC107082237 other downstream 661979 23560848 ~ 23571243 (+)
casp2 casp2,LOC102795506,LOC103369458 other downstream 742686 23641555 ~ 23651496 (+)

Expression


Co-expression Network