pmvk (pmvk)


Basic Information

Item Value
gene id pmvk
gene name pmvk
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 40480066 ~ 40487346 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806092.1
ATGTGGTCCGACAGTCAGGAAGCAGCCACGCTTCATATTATACTACatgcacatactatatactagATACTATATACTAGATACTAGATATACATCAGTCAGGAGCTCCGCAGCCAACCGAAGGGGACCAGAGGACTGATGCAGGGTCTGGGTTCTGGGTTTAAGGACCAGAGGACTGAGGACCAGAGGACTGATGGAGGGTCTGGGTTCTGGTTTAGGGACCAGAGGACTGATGGAGGATCCAGAACCTGAACCCAAACTGGTTCTGGTCTTCAGCGGGAAACGGAAGTCCGGGAAGGATTACGTGACGGACCTGATTCACAGCCGtTTGGGACCAGATGTTTGCTGCGTCCTGCGTCTGTCTGGACCTCTGAAACAGCAGTATGCTCAGGAGCATGGTCTGGACCTGGACCAGCTGCTGGGACCTGGTCTCTATAAGGAGCAGTTTCGGGCCGATATGATTCTTTGGGGAGAAACTCGCCGACGCCACGACCCCGGATTCTTCTGTCGCCTAGCAACCAGAGGAGCACGGCAACCTGTCTGGgtgGTCAGCGATGCTCGCCGGCTGTCTGACCTGCGATGGTTCTTCTCCGAGTTTCCTCGACAGACTCGAAGTGTTCAAGTTCAAAGTTCAGAAACCACTCGGACACAGAGGGGGTGGAGCTTCACCGCAGgtgtGGATGATGCAGAGTCTGAGTGCGGCCTGGACAGCGGCGTGGAGTTTGATTGGATCATCACCAACGAGGCCGACGCCCCTTCACTAGAAGAGCAGCTGCAGCCAATCCTGAAGCTCGCCGAAGAAGCAGCAGCATCATCGCTGTGATAACTCACCTTCACACAGGaagcagcatc
>XM_039806093.1
CAGCTGATGTGGTCCGACAGTCAGGAAGCAGCCACGCTTCATATTATACTACatgcacatactatatactagATACTATATACTAGATACTAGATATACATCAGTCAGGAGCTCCGCAGCCAACCGAAGGGGACCAGAGGACTGATGCAGGGTCTGGGTTCTGGGTTTAGGGACCAGAGGACTGATGCAGGGTCTGGGTTCTGGGTTTAAGGACCAGAGGACTGAGGACCAGAGGACTGATGGAGGGTCTGGGTTCTGGTTTAGGGACCAGAGGACTGATGGAGGATCCAGAACCTGAACCCAAACTGGTTCTGGTCTTCAGCGGGAAACGGAAGTCCGGGAAGGATTACGTGACGGACCTGATTCACAGCCGtTTGGGACCAGATGTTTGCTGCGTCCTGCGTCTGTCTGGACCTCTGAAACAGCAGTATGCTCAGGAGCATGGTCTGGACCTGGACCAGCTGCTGGGACCTGGTCTCTATAAGGAGCAGTTTCGGGCCGATATGATTCTTTGGGGAGAAACTCGCCGACGCCACGACCCCGGATTCTTCTGTCGCCTAGCAACCAGAGGAGCACGGCAACCTGTCTGGgtgGTCAGCGATGCTCGCCGGCTGTCTGACCTGCGATGGTTCTTCTCCGAGTTTCCTCGACAGACTCGAAGTGTTCAAGTTCAAAGTTCAGAAACCACTCGGACACAGAGGGGGTGGAGCTTCACCGCAGgtgtGGATGATGCAGAGTCTGAGTGCGGCCTGGACAGCGGCGTGGAGTTTGATTGGATCATCACCAACGAGGCCGACGCCCCTTCACTAGAAGAGCAGCTGCAGCCAATCCTGAAGCTCGCCGAAGAAGCAGCAGCATCATCGCTGTGATAACTCACCTTCACACAGGaagcagcatc
>XM_039806094.1
ATGTGGTCCGACAGTCAGGAAGCAGCCACGCTTCATATTATACTACatgcacatactatatactagATACTATATACTAGATACTAGATATACATCAGTCAGGAGCTCCGCAGCCAACCGAAGGGGACCAGAGGACTGATGGAGGGTCTGGGTTCTGGTTTAGGGACCAGAGGACTGATGCAGGGTCTGGGTTCTGGGTTTAGGGACCAGAGGACTGATGCAGGGTCTGGGTTCTGGGTTTAAGGACCAGAGGACTGAGGACCAGAGGACTGATGGAGGGTCTGGGTTCTGGTTTAGGGACCAGAGGACTGATGGAGGATCCAGAACCTGAACCCAAACTGGTTCTGGTCTTCAGCGGGAAACGGAAGTCCGGGAAGGATTACGTGACGGACCTGATTCACAGCCGtTTGGGACCAGATGTTTGCTGCGTCCTGCGTCTGTCTGGACCTCTGAAACAGCAGTATGCTCAGGAGCATGGTCTGGACCTGGACCAGCTGCTGGGACCTGGTCTCTATAAGGAGCAGTTTCGGGCCGATATGATTCTTTGGGGAGAAACTCGCCGACGCCACGACCCCGGATTCTTCTGTCGCCTAGCAACCAGAGGAGCACGGCAACCTGTCTGGgtgGTCAGCGATGCTCGCCGGCTGTCTGACCTGCGATGGTTCTTCTCCGAGTTTCCTCGACAGACTCGAAGTGTTCAAGTTCAAAGTTCAGAAACCACTCGGACACAGAGGGGGTGGAGCTTCACCGCAGgtgtGGATGATGCAGAGTCTGAGTGCGGCCTGGACAGCGGCGTGGAGTTTGATTGGATCATCACCAACGAGGCCGACGCCCCTTCACTAGAAGAGCAGCTGCAGCCAATCCTGAAGCTCGCCGAAGAAGCAGCAGCATCATCGCTGTGATAACTCACCTTCACACAGGaagcagcatc
>XM_039806095.1
ATGTGGTCCGACAGTCAGGAAGCAGCCACGCTTCATATTATACTACatgcacatactatatactagATACTATATACTAGATACTAGATATACATCAGTCAGGAGCTCCGCAGCCAACCGAAGGGACCAGAGGACTGAGGACCAGAGGACTGATGGAGGGTCTGGGTTCTGGTTTAGGGACCAGAGGACTGATGGAGGATCCAGAACCTGAACCCAAACTGGTTCTGGTCTTCAGCGGGAAACGGAAGTCCGGGAAGGATTACGTGACGGACCTGATTCACAGCCGtTTGGGACCAGATGTTTGCTGCGTCCTGCGTCTGTCTGGACCTCTGAAACAGCAGTATGCTCAGGAGCATGGTCTGGACCTGGACCAGCTGCTGGGACCTGGTCTCTATAAGGAGCAGTTTCGGGCCGATATGATTCTTTGGGGAGAAACTCGCCGACGCCACGACCCCGGATTCTTCTGTCGCCTAGCAACCAGAGGAGCACGGCAACCTGTCTGGgtgGTCAGCGATGCTCGCCGGCTGTCTGACCTGCGATGGTTCTTCTCCGAGTTTCCTCGACAGACTCGAAGTGTTCAAGTTCAAAGTTCAGAAACCACTCGGACACAGAGGGGGTGGAGCTTCACCGCAGgtgtGGATGATGCAGAGTCTGAGTGCGGCCTGGACAGCGGCGTGGAGTTTGATTGGATCATCACCAACGAGGCCGACGCCCCTTCACTAGAAGAGCAGCTGCAGCCAATCCTGAAGCTCGCCGAAGAAGCAGCAGCATCATCGCTGTGATAACTCACCTTCACACAGGaagcagcatc
>XM_039806096.1
ATGTGGTCCGACAGTCAGGAAGCAGCCACGCTTCATATTATACTACatgcacatactatatactagATACTATATACTAGATACTAGATATACATCAGTCAGGAGCTCCGCAGCCAACCGAAGGGGACCAGAGGACTGATGGAGGATCCAGAACCTGAACCCAAACTGGTTCTGGTCTTCAGCGGGAAACGGAAGTCCGGGAAGGATTACGTGACGGACCTGATTCACAGCCGtTTGGGACCAGATGTTTGCTGCGTCCTGCGTCTGTCTGGACCTCTGAAACAGCAGTATGCTCAGGAGCATGGTCTGGACCTGGACCAGCTGCTGGGACCTGGTCTCTATAAGGAGCAGTTTCGGGCCGATATGATTCTTTGGGGAGAAACTCGCCGACGCCACGACCCCGGATTCTTCTGTCGCCTAGCAACCAGAGGAGCACGGCAACCTGTCTGGgtgGTCAGCGATGCTCGCCGGCTGTCTGACCTGCGATGGTTCTTCTCCGAGTTTCCTCGACAGACTCGAAGTGTTCAAGTTCAAAGTTCAGAAACCACTCGGACACAGAGGGGGTGGAGCTTCACCGCAGgtgtGGATGATGCAGAGTCTGAGTGCGGCCTGGACAGCGGCGTGGAGTTTGATTGGATCATCACCAACGAGGCCGACGCCCCTTCACTAGAAGAGCAGCTGCAGCCAATCCTGAAGCTCGCCGAAGAAGCAGCAGCATCATCGCTGTGATAACTCACCTTCACACAGGaagcagcatc

Function

symbol description
pmvk Predicted to enable phosphomevalonate kinase activity. Predicted to be involved in cholesterol biosynthetic process and isopentenyl diphosphate biosynthetic process, mevalonate pathway. Predicted to act upstream of or within cholesterol metabolic process; phosphorylation; and sterol biosynthetic process. Predicted to be located in cytosol. Human ortholog(s) of this gene implicated in porokeratosis. Orthologous to human PMVK (phosphomevalonate kinase).

NR:

description
PREDICTED: phosphomevalonate kinase

GO:

id name namespace
GO:0006695 cholesterol biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004631 phosphomevalonate kinase activity molecular_function

KEGG:

id description
K13273 PMVK; phosphomevalonate kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806092.1 False 852 mRNA 0.54 6 40480066 40487340
XM_039806093.1 False 898 mRNA 0.55 6 40480066 40487346
XM_039806094.1 True 931 mRNA 0.55 6 40480066 40487340
XM_039806095.1 False 811 mRNA 0.54 6 40480066 40487340
XM_039806096.1 False 758 mRNA 0.54 6 40480066 40487340

Neighbor

gene id symbol gene type direction distance location
tmem79b NA coding downstream 115882 40354634 ~ 40364184 (-)
LOC120562375 NA coding downstream 227912 40245385 ~ 40252154 (-)
LOC120562374 NA coding downstream 278933 40180342 ~ 40201133 (-)
LOC120562362 NA coding downstream 304950 40125425 ~ 40175116 (-)
LOC120562356 ttc24 coding downstream 556917 39901765 ~ 39923149 (-)
LOC120562399 NA coding upstream 323889 40811235 ~ 40816555 (-)
LOC120562403 NA coding upstream 396775 40884121 ~ 40888754 (-)
LOC120562505 LOC100690881,LOC102207812,LOC101474950 coding upstream 912464 41399810 ~ 41409787 (-)
myo1eb LOC104937078,LOC101474664,LOC102208361,LOC100691416,LOC102308324 coding upstream 1127563 41614909 ~ 41660714 (-)
selenbp1 selenbp1 coding upstream 1516506 42003852 ~ 42047544 (-)
G80178 LOC103374405,LOC107095278,LOC104937304,LOC102793710,LOC100708478,LOC102303267 non-coding downstream 8819 40451313 ~ 40471247 (-)
G80177 NA non-coding downstream 35358 40444385 ~ 40444708 (-)
G80170 NA non-coding downstream 59634 40417078 ~ 40420432 (-)
G80146 NA non-coding downstream 135752 40295830 ~ 40344314 (-)
G80158 NA non-coding downstream 157505 40321915 ~ 40322561 (-)
G80185 NA non-coding upstream 3111 40490457 ~ 40492193 (-)
G80218 NA non-coding upstream 186122 40673468 ~ 40674902 (-)
LOC120562416 NA non-coding upstream 234466 40721812 ~ 40723898 (-)
G80229 NA non-coding upstream 269494 40756840 ~ 40758517 (-)
G80246 NA non-coding upstream 322476 40809822 ~ 40810781 (-)
G80129 NA other downstream 172543 40222367 ~ 40307523 (-)
LOC120562372 NA other downstream 245403 40203039 ~ 40234663 (-)
G80046 NA other downstream 618518 39779384 ~ 39861548 (-)
G80027 NA other downstream 902127 39576663 ~ 39577939 (-)
G79872 NA other downstream 1023427 39396261 ~ 39456639 (-)
G80186 NA other upstream 4977 40492323 ~ 40497596 (-)
LOC120562415 NA other upstream 190997 40678343 ~ 40765467 (-)
G80488 NA other upstream 528504 41015850 ~ 41017192 (-)
G80498 NA other upstream 615897 41103243 ~ 41104094 (-)
LOC120562506 NA other upstream 925607 41412953 ~ 41421025 (-)

Expression


Co-expression Network