dhx16 (dhx16)


Basic Information

Item Value
gene id dhx16
gene name dhx16
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 28981531 ~ 28997434 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806150.1
ACTTACATGACGTATTTCCGCTTCCGCTCTCAGCGTGCATTAAGCTAAGTTAGTATTTTACATGTATTGGTTACTTTATTTATGTGGTGTTTTGTTTGTAGAAAAAAGCAATCCCACAAATTACTAATTTTACATGGCTACGGAGGGATGTAAATATCCATTAAGTGTCCTTACCGAGAACGACAACTAAACAACACCTCATTTGTAACGTTTGCtggagttagctagctagctagctcgctCGCAGCCTGCAGCTACTTCTGCCATAACAACAACGTTGTTTGAGCATTTTGAAAAGCGGCACCATGGCTAATCTAGAGCAGTGGGTGAATGACCGTCTCCATGACATCCTCGGGTTGAGTGACAGATATGTGTCTCAATTCATGATCGGCACTGCACGGAAAGCGTCGAGTCCTCAAGACTTTGTGACTCGTCTCGAGCAGACGGGCACGATTGACATCGAACCGAGTGTGGTTGCCTTTGCGCAGGAGCtctttgacaagATTCCTCGCAAGCAGGTTGTTGAGAAACCAGCCCGTGCGATGGAACGGGAAGCCATTGAAATGGACAGGAAGAATCGCACGTACACATTACTGGAGGACAGCGACAGTGATGGAGACGCTGTGATAGAGAAGcagaaagggaaaaagaaaagcaaggacaaagacagaggaaatcGGAGGAAGCACATCAGACAGAAGAAAGAGAGTGAGTCGTCAAGTGAGGACGAAGCATCTAAAAGGGGCAGTTCAGGCCAAGGGGAGCACAAGTCTCTCAataaggaagaggaagaggaagagtgGGAGAAGGAAGAACGAGAGCGACAGCATGACATTGAAGAGAGAGATGCGTTTGCCGAGCGAGTGAagcagaaagacaaagacaagacCCGCAACATAACCGAGAGGACTGACAAAAAGGCTTATGAGGAAGCTCAGAAGAGGCTGAAGATGGCTGAAGATGATCAGAAGAACATGTTGCCAGAGTTGAGGAAGCGCTCTCGCTGGGATTATCTAAagaagagagaggcagagaagcTGGAGGACCTGGAGGCAGAGATCAAAGACGATGAGTACCTTTTCCATACAGATGAGCTGACcgagagggaaagaaaggaaTTGGAATACAAACGCACCCTTCGTGACCTGGCTAAAGATTACAAAAAGGCTGGTGCCAAGgaacaggaggagaggaagaacagATACTATATgccagaagagaagagaagcaaGGAGATGCCGCAGAGGGACCTGGAGCTGGAGGAAACTCCCATGGAGCTGGGAGGAGAGCAAGGCCGCtgggaggaggagaggctgAAGACGGCCTCCCTCAGCTTCGGTGCCAAGAGGGAGCGAGAGCAAGGGATGAGGCAGGAGCAGGAGAAGTACCAGCTGATCCTAGAGGAGGAAGAGATGATCGACTTTGTCAGCACTGCCATGACCATGAAGGGAACTCGGACGGAAGAGGAGCAGGAGGCCCTGGCTGTGTCCCAGGCGGAGCTGAAGAAACAGTCCATGCAGGAGGTCCGACGCAGTCTGCCAATCTTCCCCTACAGAGAGGACCTGCTAGCTGCCATCCACGAGCACCAGATCCTGGTCATTGAGGGCGAGACGGGCTCGGGAAAGACCACCCAGATCCCGCAGTACCTCCTGGAAGACGGCTACACACAAGGAGGCATGAAGATCGGATGTACACAGCCTCGCAGAGTGGCAGCCATGTCAGTGGCAGCCAGAGTGGCACAGGAAATGAGCGTCAAGCTTGGGAATGAGGTGGGTTATAGTATTCGTTTTGAGGACTGCACATCAGAGAGAACAGTGCTCAAGTACATGACAGACGGCATGCTGCTCCGAGAGTTTCTCACCGAGCCCGACCTGGCCAGCTACAGtgTGATCATCATAGATGAAGCCCACGAGCGAACACTCCACACAGACATACTCTTTGGTCTGATCAAAGACATCGCCAGATTCAGATCAGACCTGAAGGTGCTGGTGGCCAGCGCCACTCTGGACACCGAGCGCTTCTCCTGCTTCTTTGACGACGCACCAGTCTTCAGGATCCCTGGCAGAAGGTTCCCCGTCGATATCTTCTACACTAAAGCTCCAGAGGCTGACTACCTGGAAGCCTGCGTGGTGTCGGTGCTACAGATCCACGTCACCCAGTCTCCTGGAGACGTTCTGGTCTTCCTCACTGGACAGGTATTGTTTATATCGAGCATGGGATTCTTCACGACTTTtgtcaaaggtttggacacaatTGTAATAGGAGATTGGTCGTGGTGGTTTCCTTCACCTTATTTTGTTAGTAATATCTGCATATGTTCTGTCAATTTTGGACAAAATAATTGCAAGATATACTTATTCACCTCACAATTTCTTAGCCTGTATGCAATGCTCAGTCTTCAAGCCTGGGCATATGAGATGGGCTCGTGTCTGGTCCACTCCTGGTCTGGGGCTCTGGATGGGGATCTGTGGTGTGGTGTCTCATTCCATTTCATGGACCATGTGGTCTTCCTGTGTTCAAATGATAACTGTTGTTTTTGCCTTCTCTGTATATACCTCTCTGCATtttttatatacttttatttcaattttttgCCTCCTTCCAGGTACAAGTGTTCGGAGGAAGTGTTGACAATTGCAGCCATGCTGTCGGTGAACAACTCTATTTTCTACCGGCCCAAAGACAAGGTGGTGCACGCCGACAACGCCAGGATGAACTTTGTGGTGCCAGGGGGAGACCACCTGGTGCTCCTCAACGTGTACACACAGTGGTTGGAGAGTGGTTACTCCACACAGTGGTGCTACGAGAACTTCATCCAGTTCCGCTCCATGAGAAGAGCCCGGGACGTCAGGGACCAGCTGGAGGGTCTGATGGATCGTATTGAGGTGGAGGTGGTCAGCTCCCAGGGAGACAGCTTACCCATTCGCAAGTCGGTGACGGCAGGATATTTCTATCACACGGCGCGACTGAGCAAAGGCGGCTACAAGACAGTGAAGCACCAGCAGACGGTCTACGTTCACCCCAACAGCTCTCTGTTCGAGGAGCAGCCCCGCTGGCTCATCTACCACGAGCTGGTCTTCACCACCAAGGAGTTCATGAGACAGGTAATTGAGATAGACAGCGGCTGGCTGCTTGAAGTGGCTCCTCACTACTACAAGAGCAAAGAGCtggaggacagcagcagcaagaaGATGCCCCGCAAGCAAGGAAAAACAAAAGAGGAGCTGGGCTGAAGAAAAGACCGTTGCTCAGGGGACTGATggtgaaaataaaaagtgctGGGGCAcactcccttcctctctcaggGCAGGTTAAAAGTAGAAAAATGCCTTTTGAttgtataaaaataaagtggAAAAGTGTGGAAAATGTAGTTGCAGCTACATGGTTCTAACCTGTCTTCACATGTTTGTCTTCAATTGTTTTCTGCTGTAGCCTGATATGGCATTTTGGATCAAATTCATCTGCATAGCCTGAACACAGACTCGAAAGACGGGACCAGTGAGAAGTGGGTGAAAAACTCACTGACTGGTTTAATCTTGAACCAGCCACTTCAGCTTCAACAACGAAACATTAATGCACTTGGAGTTTCCTGCATTACAACAGCAGTACTGACTCACTGGGTGTGTTCTTTAACTCCTTAAAGAACAAGACCATTGATTTGGTTTCTAGGTGCTATGGAACGACCACCAGACTCTTtgttgactttttctttttaattgtgtATTTGTGAAAGCAGCACACTGTTAAAGTGTGCACATTACTAAGGAGCCTCTATGAAGCTGAAAAGACTAATTTCTACTGCAATAAAGTTTTACATCCA

Function

symbol description
dhx16 Predicted to enable RNA binding activity. Acts upstream of or within endodermal cell differentiation. Orthologous to human DHX16 (DEAH-box helicase 16).

NR:

description
putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X1

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806150.1 True 3823 mRNA 0.49 17 28981531 28997434

Neighbor

gene id symbol gene type direction distance location
fli1rs LOC104940799,LOC103372032,LOC104935032 coding upstream 43768 28918527 ~ 28937763 (+)
LOC120562583 NA coding upstream 77734 28898084 ~ 28903797 (+)
LOC120562582 NA coding upstream 87120 28890050 ~ 28894411 (+)
trnaa-ugc_7 NA coding upstream 134748 28846712 ~ 28846783 (+)
trnag-ucc_8 NA coding upstream 135065 28846395 ~ 28846466 (+)
rnf183 NA coding downstream 794 28998228 ~ 29000667 (+)
LOC120563046 NA coding downstream 5202 29002636 ~ 29004810 (+)
mgat1a mgat1,LOC104964845 coding downstream 7191 29004625 ~ 29007832 (+)
sh3bp5la LOC104964842,LOC103356806 coding downstream 11139 29008573 ~ 29019134 (+)
gabbr1a gabbr1,LOC103356805 coding downstream 22213 29019647 ~ 29082136 (+)
LOC120563088 NA non-coding upstream 30007 28943905 ~ 28951524 (+)
G76885 NA non-coding upstream 38805 28941062 ~ 28942726 (+)
G76887 NA non-coding upstream 41176 28939209 ~ 28940355 (+)
G76859 NA non-coding upstream 100343 28880973 ~ 28881188 (+)
LOC120562350 NA non-coding upstream 139261 28836396 ~ 28842270 (+)
G76935 NA non-coding downstream 18442 29015876 ~ 29085487 (+)
G76969 NA non-coding downstream 129521 29126955 ~ 29127212 (+)
G76995 NA non-coding downstream 299524 29296958 ~ 29302135 (+)
G77004 NA non-coding downstream 316665 29314099 ~ 29314625 (+)
G77014 NA non-coding downstream 365799 29363233 ~ 29365430 (+)
LOC120562342 NA other upstream 146163 28800650 ~ 28835368 (+)
G76714 NA other upstream 411665 28553572 ~ 28569866 (+)
G76707 NA other upstream 459909 28520699 ~ 28521622 (+)
LOC120562434 NA other upstream 564776 28414518 ~ 28416755 (+)
drd2l LOC108240316,LOC107379306,LOC103372392 other upstream 565878 28388097 ~ 28415653 (+)
pear1 LOC104932170 other downstream 182396 29179830 ~ 29244092 (+)
mex3a mex3a other downstream 278713 29276147 ~ 29288548 (+)
G77009 ubqln4 other downstream 331355 29328789 ~ 29330258 (+)
LOC120562177 LOC104942602,LOC104934039,LOC103362363 other downstream 386701 29384135 ~ 29390053 (+)
G77028 LOC104942601 other downstream 406574 29404008 ~ 29412413 (+)

Expression


Co-expression Network