LOC120562445


Basic Information

Item Value
gene id LOC120562445
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 32204754 ~ 32212177 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806158.1
ATGTTCGTGGACGGTGTAAACAAGCCATTCAAGATTAAGATTATTGACTTTGGCTTGGCCCGTTATGTCTCTCAGATCGAATCGGGCTCATACATGCAGCCACGCTATTACAGGTCTCCAGAGGCCATTCTGGGATTTCCCTTCACAACAGCCATTGACATGTGGTCTTTGGGCTGCGTTGCTGCGGAGCTGTTCCTGGGCTATGTGCTGTACCCCGGCGACTGCGACTACGACATGCTCCAGCATATGGTGCAGACTCAGGGTCAGCTACCGCACGAACTTCTCAACAACGGCATCAAAACCTGGTGCTTTTTCCGCAGAAACCGGGGCCGTAGACGTAGCTGGAGATTAAAGACGCCATTTGAATACGGACAAGTCACCCGCAGCGAGAGCCATTTCAACTCCCTGAATGACCTGAAGAAGATAAGACCAGCCTGCCATCTCTCAAACGAGGACACCATGGCAGAAAGCAAAGACCAGGAGAACTTTGTGGATTTGCTCAAGAAGATGCTTCATCTGGACATCGGTCAACGGATAACACCCGGCCAACTTCTGGAGGATCCATTCATCACCATGTGCGACCTGGCTAACAGATACCCCAACAGCTTTTACGTGAAAttaggctgtgaaatgatggaAGTCTGTCTGGATCAGAGTATGAGCCCTCATGACATGGATCAGCAGCCGTGGCTGAACCTGCAGGCCTCCACCAGCACCGCCAGCCTGGACCAGCACAACCTCCCCGGCCAGGTCACTCCTGTCTGGAACCGTCGCCAAGAGCATCCCTTCGTACTGAGGATAGCATCGGCCGTCTCCAGCAGCCTCTCCATCCAGGACCAGAGTCTATTGCAACCACAGCAACTCAGCTTCTCTGCTGAGGAGGAAATGACAGCGCCAGAGCCGTCGCTGCCCTCCACCTCTGAGGTTCAAATCTACATGGGCGAAGTTAGTCCTGTGAGGAAAATGAAGAGCGACTCTTTTGAAGCCTTACAGAGTGGTGACATAAGCCTGGAAAGTGCCctgacagagagcaagaggatAAAGACAGATTTCATAGAGACCCAAGCAGaggttCCAGCTGAGGCTTCATCCAGCACAGCCAAAGCTAAGCCTCAGAGGAAAAGGACATGGGACACTGTTGTAGCCTCAAACAGTGGGTTAAGAGCTCCAGACAAGGACTCGCCACAGAGaaagaagatgaagatgaaCCTGCTAAATGACTCAAAAGAGGCTCCAATTATAACTTTGTCCAGTGAGGCCAAAATTAAACCGCAAAGGAAAAGGACACGGGCCACTTTTGTAGCCTCACACAGTGGGTTAAGAGCTCCAGACAGAAACTCGCCAGAAAGGAAGAAGATGAAGATTAGAGAGGATCCAATTGAAACTCTGTTCAGTGAGGCCAAAATTAAACCGCAAATCAAAAGGTTGTGGGACACTTTTGTTGCTTCGAACAGTGGGTACAGAAGCGGCTctccagaaagaaagaggaggacGATGAGCCTGAATGAGATAAGCGCCACAACTGTAACCAGGCTTTATCCAGCGAGGCCAGAAGTCCAGAGAGTGACAAAAACACCAGGCCATGGATGTGAGCTCAGCAGCGCCGGGGCACAACGGAGCAAGAGTGACGAAGGACCGCGAAACACGGTGGAGGACAGCAGAGCCAGAGAGACGAGGTTTGAGGACAGCAGTTCCACGGCCCAGGGGGACATCAGGACATCAGGAGGTTTGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806158.1 True 1734 mRNA 0.52 13 32204754 32212177

Neighbor

gene id symbol gene type direction distance location
smarcc1a smarcc1 coding upstream 11706 32166319 ~ 32193048 (+)
LOC120562212 NA coding upstream 55423 32145392 ~ 32149331 (+)
dpy19l1l dpy19l1,LOC102792675 coding upstream 80377 32090158 ~ 32124377 (+)
herpud2 LOC103361314 coding upstream 245356 31949622 ~ 31959398 (+)
pkdc LOC102076377,LOC101468599,LOC102793757,LOC102209191,LOC102303972 coding upstream 256981 31943411 ~ 31947773 (+)
cspg5a cspg5,LOC103364230 coding downstream 16826 32229003 ~ 32293702 (+)
elp6 elp6,LOC102790853 coding downstream 96907 32309084 ~ 32314913 (+)
LOC120562270 scap coding downstream 102845 32315022 ~ 32374187 (+)
LOC120562193 LOC103388706 coding downstream 641180 32853357 ~ 32888350 (+)
tnfaip8l2b tnfaip8l2 coding downstream 680354 32892531 ~ 32900329 (+)
G77722 LOC102207529,LOC102306104 non-coding upstream 64611 32138777 ~ 32140143 (+)
G77687 NA non-coding upstream 214384 31989886 ~ 31990370 (+)
G77685 NA non-coding upstream 219014 31985466 ~ 31985740 (+)
G77684 NA non-coding upstream 222038 31982468 ~ 31982716 (+)
G77683 NA non-coding upstream 222362 31980051 ~ 31982392 (+)
G77757 NA non-coding downstream 82918 32295095 ~ 32295320 (+)
G77764 NA non-coding downstream 148368 32360545 ~ 32369078 (+)
G77762 NA non-coding downstream 162520 32374697 ~ 32376913 (+)
G77776 NA non-coding downstream 241010 32453187 ~ 32453410 (+)
G77862 NA non-coding downstream 554094 32766271 ~ 32766508 (+)
G77682 tbx20 other upstream 224845 31976318 ~ 31979909 (+)
G77447 NA other upstream 1068608 31134829 ~ 31136146 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other upstream 1473145 30687338 ~ 30731609 (+)
LOC120562443 NA other upstream 1844166 30351495 ~ 30360588 (+)
G77239 NA other upstream 2080116 30123702 ~ 30124638 (+)
LOC120561717 NA other downstream 192956 32405133 ~ 32421472 (+)
G77888 NA other downstream 888236 33100413 ~ 33101534 (+)
bmper bmper other downstream 1613910 33826087 ~ 33879132 (+)
LOC120562157 NA other downstream 1682183 33894360 ~ 33904285 (+)
sh3bp5b sh3bp5,LOC102783023 other downstream 1778365 33990542 ~ 34042648 (+)

Expression


Co-expression Network