atp2c1 (LOC103369286)


Basic Information

Item Value
gene id atp2c1
gene name LOC103369286
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 36760510 ~ 36792668 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806172.1
TGCGCCCTGCTCTCCTTCAGTCTGGCGGTCGCTGCCATCCCAGAGGGTTTACCCATCGTGGTGACGGTGACGCTGGCGCTGGGCGTGATGCGCATGGTGAAGAAAAGAGCCATCATCAAGAAGCTTCCCATCGTAGAAACTCTGGGCTGCTGTAACGTGATCTGCTCCGACAAGACGGGGACTCTGACCAAGAACGAGATGACCGCCACTCAGCTGTTCACATCGGACGGACTCCACGCTGAGGTGACCGGCGTCGGCTACAACGGAGCGGGAGAAGTTTTACTGGACGGGGAGGTCATCCACGGCTTCTCCTGCCCGTCAATCAGCAAGATCGTGGAGGTTGGCTGTGTGTGTAATGACTCCATCATCAGGAACCACACTCTGCTGGGACGACCGACCGAGGGAGCGCTCGTCGCCCTTGCCATGAAgATGGGGCTGGAGAGCCTGCAGCAGGAGTATGTCCGTCTGGAGGAGCATCCCTTCAGCTCGGAGCAGAAGTGGATGGCCGTCCGCTGTGTTCACCGCACCCTGCAGGATAAGCCGGGAGTTTACTTCATGAAGGGAGCGTATGAGCAGGTGATCCGCCTCTGCAGCTCCTATAGCAGCCGAGGATCCACACTGTCCCTGAACCACCAGCAGAGGGAGCTGTACCAGCAGCAGATCAGCTACATGGGCTCAGCTGGTCTCAGAGTCCTGGCGTTTGCGTCGGGCTCCGAGATGGGGAACCTGACCTTCCTGGGTCTGGTGGGCATCATCGACCCCCCCAGGACCGGGGTCAAAGAGGCCGTGGGCGCGCTCATCAGCTCCGGAGTCGCCATCAAGATGATCACGGGAGACTCCAAGGAAACCGCTGTGTCCATAGccAGCCGGCTGGGTCTGTACTCTAAAGGCTGCCAGTGTTTGTCTGGAGAAGAGGTGGACAACCTGGACCTGCAGCAGCTTTCAAACATCGTCTCCAGGATAGCGGTGTTTTATCGAGCCAGTCCCCGACACAAGCTGAAGATAGTCAAGTCGCTCCAGAACATCGGCGCCGTGGTGGCCATGACGGGCGACGGGGTGAACGACGCCGTGGCGCTGAAAGCGGCCGACATCGGCGTGGCGATGGGCCAGACGGGCACCGACGTCTGCAAGGAGGCGGCCGACATGATCCTAGTGGACGACGACTTCCAGACCATCATGTCGGCCATCGAGGAAGGAAAAGGAATTTACAACAACATTAAAAACTTTGTCCGCTTCCAGCTGAGCACGAGTATTGCAGCTCTGACGCTCATCTCCTTGGCAACGCTGATGAACTTCCCCAACCCGCTGAACGCCATGCAGATCCTGTGGATCAACATCATCATGGACGGCCCTCCCGCTCAGAGttTGGGCGTGGAGCCGGTGGACCGGGACGTTATCAGACAGCCTCCCCGTAACGTGAGAGACAGCATCATCACTCGCAGTCTGCTGGTCAAGGTGCTGGTGTCGGCCTTCGTCATCGTCTGTGGGACGCTGTTCGTCTTCTGGAGAGAGttgCAGGACAACGTGATCACTCCTCGAGACACCACCATGACCTTCACCTGCTTCGTCTTCTTCGACATGTTCAACGCTCTGAGCTCGCGTTCTCAGACTCGGATGGTGCATGAGATGGGTCTGTGCAGTAACCGGACCTTCTGTTATGCCGTCCTGGCCTCCATCATGGGTCAGCTGCTCGTCATCTACTTCCCTCCTCTACAGAACGTCTTCCAGACGGAGAGCCTCAGCATCTTTGACCTGCTGTTCCTGGTGACCCTCACGTCCTCGGTGTGCGTCGTGTCCGAGGCCATCAAGATGGTGGAGCGGTGGAGGGGAGCGGAGAGGAAAAGCCCGCCCTCCGACTGCTTCCACGAGGTATGACCTCCcctccctccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgaaatgAAGGACTCTGacgtttggaggaagaagaagaagaagaggagtgtgatgttttttttaggaTCTTACAACAAATGGCACTGACTAATTAAGACTGCGAGGACTTGTGGGATTTTTAGTTTTTCCTGCGAGCTTCTCCGGAGAAACTCCGGTCTGGGACTGGAGGAAGTTCCCCGGCAGCTTCGGGAGGTGAGTTAACAGACTGGACTTTGGTGAAACTGGGAGGACAAGATGCATGCTGGGAGATCAGACCCTTTACTAGAGCTCCACAGCAGCCGTTTGTTCGTGCTCGGGCCTTGCCGTAGACTACCGACCGTAGCTTTCGGGGGGGGAACGTACCGAACACAGCTTCCAGTTTCGATATTTAGGACGTAAGAATCAATGCTATAGAGAAATGTGCAATTCTCTTCcggtctttctttctttctttctttttgtatcCTTTAGAAGGTGTTGACCACTACTCAGCGTTTTCATGATTGATATTGATAACTTCATGTTTTGATTCCTCTATAGATGGTTTACAGTTAATTCACCTAGGTGGAGGTATAACGGTACAAAATGTCTAGTCCGTTACAAagttcttgttgttttttttttgttttttttagctcagccaggaaaagaaaatgtttaatttctttctgttttatttagGAAAAAGTTCTAATTTCTgctgtaaaaattaaaacactATAAGATTTACTTATAtttcaattatttaaagaagCTAAGGCGTTATGTCAGTGTCGCTGTGTGCACTTAAAGGAACATTGCAGTTCACATCGAGCGTAATGCTTTAGTTTTGTGGTTTTTTCTACGGAAGTCTATGACTGCCAATATTTAAGAAGATAATTAAAGCAAATTCAAATAAAATTTTCATCATAA

Function

NR:

description
PREDICTED: calcium-transporting ATPase type 2C member 1-like isoform X2

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K01537 ATP2C; P-type Ca2+ transporter type 2C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806172.1 True 2838 mRNA 0.52 16 36760510 36792668

Neighbor

gene id symbol gene type direction distance location
LOC120563185 NA coding upstream 218980 36528481 ~ 36541530 (+)
LOC120563182 NA coding upstream 377414 36368694 ~ 36383096 (+)
nat16l NA coding upstream 393485 36360700 ~ 36367025 (+)
LOC120563177 NA coding upstream 570095 36178207 ~ 36190415 (+)
LOC120563175 NA coding upstream 631268 36111050 ~ 36129242 (+)
LOC120563178 NA coding downstream 16892 36809560 ~ 36829422 (+)
aldh5a1 aldh5a1 coding downstream 62751 36855419 ~ 36869334 (+)
pik3r4 pik3r4 coding downstream 102721 36895389 ~ 36924827 (+)
LOC120562694 NA coding downstream 532233 37324901 ~ 37326438 (+)
LOC120561884 NA coding downstream 543403 37336071 ~ 37351571 (+)
G78825 NA non-coding upstream 40030 36684833 ~ 36720480 (+)
G78822 NA non-coding upstream 53901 36500648 ~ 36706609 (+)
G78865 NA non-coding upstream 61538 36692198 ~ 36698972 (+)
G78866 NA non-coding upstream 62003 36694103 ~ 36698507 (+)
G78863 NA non-coding upstream 93147 36666597 ~ 36667363 (+)
G78882 NA non-coding downstream 20047 36812715 ~ 36815976 (+)
G78907 NA non-coding downstream 121100 36913768 ~ 36980636 (+)
G78889 NA non-coding downstream 210915 37003583 ~ 37048033 (+)
G78921 NA non-coding downstream 216766 37009434 ~ 37010480 (+)
G78922 NA non-coding downstream 226536 37019204 ~ 37020468 (+)
LOC120562457 NA other upstream 56517 36685936 ~ 36703993 (+)
LOC120562456 dennd4b other upstream 90481 36580965 ~ 36670029 (+)
LOC120563181 LOC107378893,LOC103370072 other upstream 295280 36392252 ~ 36465230 (+)
G78772 NA other upstream 409515 36258160 ~ 36350995 (+)
G78759 NA other upstream 569671 36110851 ~ 36190839 (+)
G78888 NA other downstream 46554 36839222 ~ 36939954 (+)
G78989 NA other downstream 638503 37431171 ~ 37432679 (+)
G79007 LOC103364590,LOC102314205,LOC102798195 other downstream 738022 37530690 ~ 37550602 (+)
cmtm7 cmtm7 other downstream 1086248 37878916 ~ 37888006 (+)
nek11 nek11,LOC102796711 other downstream 1263748 38056416 ~ 38145804 (+)

Expression


Co-expression Network