LOC120562479 (LOC104959728,LOC104960595,LOC106675582)


Basic Information

Item Value
gene id LOC120562479
gene name LOC104959728,LOC104960595,LOC106675582
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 38268277 ~ 38270068 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806192.1
AGTACAACAGCGTATCACTGCTGTGTTTAGATCAGAGCTCAGACTAGTTTCACTTCTCAGGAAGTGAGACTCAGACAGTCGTTGTTACTGACcgagaggtgaaatggcgcagaaaggagttcagctggaccgggaaaccttctcttgtcccatctgtctggatctactgaaggatccggtgactactccctgtggacacagctactgcatgaactgtattaaaagccactggGATGGAGAGGATCATAAGTACAACTACAGCTGCCCTCAGTGCAGGAAGACTttcacaccgaggcctgtccTGTTGAAAAGCACCATGTTAGCAGctttagtggaggagctgaagaagactggactccaagctgctcctgctgatcactgctatgctggagctgaagatgtggcctgtgatgtctgcaccgggagaaaactcaaagcaCACAAGTCCTGTTTGCAATGTCTGGCTTCTTTCTGTGAGCAACACCTTCAGCTTCATTTTGAATCGGAGACAttcaagaaacacaagctggtggagccgtccaagaagctccaggagaacgtctgctctcgtcatgatgaggtgatgaagattttctgccgtactgatcagcagcttatctgttCTCTCTGCTTAATGGAggaacataaaggccacgacacagtctcagctgcagcaaaaaggactgagaggcagaaaaagcCTGCGGGGGAGTCGCCAAAGCATCCtgcagagaatccaggacagagagaaagatTCGcacaaccagagcccaagaccagagctgacttcttaaaatattcacgtgaaatcacactggatccaaacacagcaaacacacggctgttattatctgaggggaacaggaaagcaacaGTAATGAGACAACGTCAGtcttattctagtcacccagacagattcactgGCTGGTATCAGGTCTtgagtagagagagtctgactggacgttggTACTGGGAggtgaagaggagaggagaaggaggagttTCTTtagcagtcgcatacaagaaTATGAGCAGAGCAGGGGGGTCGGATGAATGTGTATTTGGATACAATGACAAATCTTGGGCGTTATAttgtaacaacaacaaatatacattttggTCCAACAATGTCCAAACTCCCATCTCAGGTcctgagtcctccagagtaggagtgtacctggatcacagtgcaggtattctgtccttctacagcgtctctgaaaccatgactctcctccacagagtccagaccacattcactcagccgctATATGCTGGACTAATGGTTTATGGTTGTTATAATGGAgcctctgctgagttgtgtaactgaaatagacagaagtcatttaagggttatattctgtgttttaactctTCGACTTAT

Function

NR:

description
PREDICTED: tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806192.1 True 1384 mRNA 0.47 2 38268277 38270068

Neighbor

gene id symbol gene type direction distance location
LOC120563002 NA coding upstream 9242 38257203 ~ 38259035 (+)
LOC120561705 NA coding upstream 422563 37826889 ~ 37845714 (+)
zgc:153896 LOC100708450,LOC103364589,LOC101166003,LOC106527367 coding upstream 525811 37734725 ~ 37742466 (+)
LOC120561575 NA coding upstream 548248 37717368 ~ 37720029 (+)
LOC120562469 NA coding upstream 558316 37706105 ~ 37709961 (+)
LOC120563007 NA coding downstream 17669 38287737 ~ 38291323 (+)
si:dkey-7j14.6 NA coding downstream 133084 38403152 ~ 38428485 (+)
tg NA coding downstream 255136 38525204 ~ 38575568 (+)
LOC120563014 NA coding downstream 311450 38581518 ~ 38592495 (+)
plin6 NA coding downstream 614222 38884290 ~ 38903260 (+)
G79367 NA non-coding upstream 3000 38264735 ~ 38265277 (+)
G79355 NA non-coding upstream 32286 38187616 ~ 38235991 (+)
G79359 NA non-coding upstream 42805 38224568 ~ 38225472 (+)
G79285 NA non-coding upstream 46528 38063697 ~ 38221749 (+)
LOC120563039 NA non-coding downstream 97051 38367119 ~ 38367849 (+)
G79384 NA non-coding downstream 103759 38373827 ~ 38379212 (+)
G79386 NA non-coding downstream 110524 38380592 ~ 38380881 (+)
G79374 NA non-coding downstream 135043 38405111 ~ 38459995 (+)
G79370 NA non-coding downstream 135409 38405477 ~ 38412407 (+)
LOC120562476 NA other upstream 79514 38182150 ~ 38188763 (+)
nek11 nek11,LOC102796711 other upstream 122473 38056416 ~ 38145804 (+)
cmtm7 cmtm7 other upstream 380271 37878916 ~ 37888006 (+)
G79007 LOC103364590,LOC102314205,LOC102798195 other upstream 717675 37530690 ~ 37550602 (+)
G78989 NA other upstream 835598 37431171 ~ 37432679 (+)
LOC120562481 NA other downstream 31357 38301425 ~ 38305892 (+)
cmtm6 NA other downstream 163906 38433974 ~ 38455559 (+)
LOC120562999 NA other downstream 323977 38594045 ~ 39098913 (+)
G79605 NA other downstream 396204 38666272 ~ 38673012 (+)
cpne4a cpne4,LOC107379031,LOC103372348,LOC102220834,LOC108412597 other downstream 406668 38676736 ~ 38780360 (+)

Expression


Co-expression Network