LOC120562533 (lpcat1,LOC103360438,LOC100699650)


Basic Information

Item Value
gene id LOC120562533
gene name lpcat1,LOC103360438,LOC100699650
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 15619516 ~ 15653052 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806257.1
CATGCGCTCTGTCAGAAAAGCAGAATCGTGGCTGCGTTTAGCATTCAGAGCTAGCGGACTGGTTGGGAAACAACACCTGCGCACTATAGGCAGAAATCGGCGACTTTAAATATCCCCAGCTAATCCTTGAGCTAGCCATTATCTCTTCATGCTGTCCGGGAAAGGAAGATAACGTTAATAACCCCGCACTGCCACCTCAATTAGCCACCGTGCAAGACGGATAAGGAAATCTGCGTTTTGCGTGAGGAGTCTACCTTTCAGGCAAAATCACTTTTCTGTTTGGAATATTAAGAATATAGCTGCAACCTCGCCCAACGTGACTTCTTGTAATAATGAGGTTACCGAGTAACCGACAATGTGCGGTGGAAGGAGATGGGAAGAAGATGGACCAAGCTCCTCCGTTCAGAAACCCTTTTGTGCACGTCTTGAAATTCACCCCTATGGAAAAGGCAAAGATTGCATTCATGACAGTCACACTGTTCCCCATCCGTCTACTCATAGCTGCATTCATGATGCTGCTGGCTTGGCCTTTTGCCTTCCTGGCCTCAGTAGGGCGCTCAGAGACCACCGTTGAACCCCAGTGCCTCTGGAGGAGACTGGTGGACATCATTCTGAAGATCATCATGCGGGTCATGTGGTTTGCGGGCGGTTTCCATTGGATGACTGTGAAAGGGCGAAGGGCATTGCCTGCAGAAGCACCCATCCTCACCCTGGCACCCCACTCGTCTTACTTTGATGCCATCCCAGTCACGATGACAATGGCCTCAATTGTCATGAAGGCCGAGAGCAAGGATATACCTCTCTGGGGTACTTTGATTAAGTACATCAggccagtgtttgtgtcacgGTCAGACCAGGACTCCAGAAAGAAGACTGTGGAGGAGATCAAACGCAGAGCTCACTCTGGAGGGGAATGGCCTCAGATAATGATTTTTCCAGAGGGAACATGCACTAATAGGTCCTGCCTAATCACCTTCAAGCCAGGGGCCTTCATCCCAGCTGTACCAGTGCAGCCTGTGGTGATTCATTACCCCAATAAACTAGACTCAATCACATGGACATGGCAAGGGCCTGGAGCGTTTGAAATCTTGTGGCTGACTCTCTGCCAGTTGCACAACGAGTTTGTGGTCGAGttCCTTCCCATCTACACACCCtcagaggaagagaaaaggaaCCCTGCTCTCTATGCCATAAACGTGAGACGTGTCATGGCTAAAGCCCTGGGGGTACCCATCACAGACTATTCATTTGAAGACTGCCAGCTGGCCATGGCAGAGGGCCAGCTGAGACTGCCAGTCGACACCTGTCTGCTGGAGTTTGCCAAGCTTGTCAGGAGACTGGGGCTGAAACCCCAGAACACTGAGAAGGTTCTCCAGGATTATGGGAACAGAGCCAGGAAGCTGGAAGGTCAGAAGCTGGACTTGGACGGCTTTGCTCAGTGCCTCGATGTGCCAGTTTCAGAGATGCTGCGAGATATGTTCGCTCTTTTTGATGAGCATGAAGATAACTGCATGGATATCAGAGAATATGTGATAGCCTTATCTGTCGTATGCAGACCTGCCAAAACTCTGGAAACGATGAAATTGGCCTTCAAGATGTTTGAGGCAGAGGAGGACGGTGCCATCACAGAGATGGAGTTGGCAGTTATCCTGAAGACGGCTTTGGGAGTGACTCACCTCAGTGTGTCACGTCTGTTTACCGCCATCGATCCTGAAAACACAGGAAAGATCACATTTGATAAGTTCAGATGCTTTGTGGAGCAGCACCCAGACTTTGCTGAGGAGTACCTGTACACAGAAAATGCAGGCCTCCACAGCAGCCCCTGCCACGGTCACCAAGCGAAGCCCAGCCTGTCTGCCCGGAACCTGCAAGGCACTGCCACCACCAAAACAGCTAACGGTATCTGCCCTGACTTCAGCCCCAAAGAACATGGCAGCACAATTGATGGACTCCTCAAGAAACACAACTAAAAGGGTTTAAAAATGTAGTGGGAGAAAACTAACACCTCTCCTGGTGAGAGGGTGTTGGGTAGGGGGAAGAGGGTAGTTCATTACCTTTTTAATTAGTAAGTTGTTTGAACAGTAAGGGACTACATTTCAGTAACCACAACTACGAAAATGACGAAGTTTACCTTATCCTTTTTTTATTAGTATTGCCATGACATTACTGAGGTTAATGTCAGCCTGGTATCACTTTATTTTGTTAtacgtttccttttttttttcttttcttttcatagcAAGGGTTGTCAAAATGCCAGAACAATGGCTGTTTCAGACACACTGCTTGAATACTTGAAGGGCAAGcacttaaaattaaaaacaaatcatggGTCAAAGTACATTTTTCTCATAGTGCTAACTGCATGTTTTAACATGAGGGAAGCAAGAAAAACACAAGCCCTGGACAGCAAAGTTAAAccattttaagtaaaatcagTGTTGGATTCTCTTTTATTTGTAACTTGTATCTGTTTCCTCTCTTTAATGGTAGCTGCCTTTTTAACTGAAAGTGCAGAATGCATGGGCTCATGTTGTTTTGAGCAGTATTGGATTATTTATCTAAAGAAGGGAGGCCTGAGGGTACCAGTGACAATTGTGTGACTACCTGAAGTGTTGAGCTACAGGAGCCACATTTGAGGTGAACTCGGGTCTCGGTGAGTTGACGGTCATAATTGCTATGAGCCTCTTACATATACAGTGATATATATGATTTAGCTCAGGGTTCagtgacaaaaatgaaaaatgtaactagtATGATGTCATCGTTTTTGACGCTCACTGGGTTTTGTGcatgtctttctttcttacGACATCCGTAATCTTCTGGCCAGTCATTCCTCATTCACATTGACTTCACAGATTTATTTCAGGTTGACACATTCAagtgtctttttatttattgttgaaATTACACAACGTGGACCAAAAATGCATTGAGTGATTTAATGTCACCTGTCATGTTTGAACTGTGCTTTTCAGTCAGTGGTGGCTTAGGTGGCTTTGTTGGGTATTCTAAAGGCAAGGTCATACGAATTCCCTTTCTGTCTTACACtgattcatttttattaattcCTACTGTTCTCCTACTACAGCATATCCTGAGTCCATCTGAAACTCCAAACTGTTCAGTTGTTTAAATATGTCATGTTCAAATATTGGACCCTTAGTCACGTCATGTTTTAAAAGAGCTCCAAGCTCCTTTGCATCCCATCACATTCACGGGACCTTTTGGAATTGGAAAATATCCACCTGTAATAATATTTAtgccttgtttgtttttctaatGGTGGTCTAATTGGCGCAGACACATTTGTCATTGAATGTGGTTTGATTACTTCTTAGGGCACTGCCATGCAGCCTGTGGCCATGCAATGTGTTTATAATCACAGGCCAGTGGGCCTATGCTTTATTACTATTTAAGATAAGAAGAACAATTTATCTCAAATCGGGCAAATAGTATTTAGCGGTCTTTAAGTTATTAATATTTTAGGACAGAGTTAACCTGATTGCTACTGGAAATAAGGTTGTATTGCAATTCTCCCTTGATATTTTGTAATGAGTCCAGTAttctacatttttaatttaagaaGCTCTGAAATTACAATCAACTTTTGGATGTATTGGCAAAAACTTTCACACACAATGATGCTCATTTCAATCATTTGCCAACAATTAATTGGCTGTGTTTCATCTATTTCGTCTGTTGAAACACACAAACTACCCCTATACTTAAAAAGAAAACCCAAAATGAAAATTGGATTATGCTGCACCTTCTCTCAAAATGTACATTGCTTTACATGTCATGTTACAGCACAATTAATTGTTAAAGGGAATACCTCTCCTGAGCAGGTGAAATGAAACGCATTAGAAGCCAGTTGTACTTGGGATCTGTGCATTCATGGTTTAATTGTGTTGACTTTTTGTATATCACATTTACaacttaagtgtttttttttattttttgtatcatTCTATAAGTTCATGATGTCAGTGAGCCTCACATTCCCATCCCGTTCATGACCATGCATACTGTACTTGTATTCCCATTATGGTTTTAGGTGAAGCAATATTTCACATCTCTTAAGCCTTCTCAAGATATATGCTTTTGAAGAGTTCTGATATGTATTTTGAATATTCCAAATGCAGGACATTTTGTGAATTTTTGATATACGTATAtgaatgatttttattttcactgcCATGACAAAGATCTGTGATCTCTCTTCTGCAGATTGTATTGATGGTGAAAAATGAGCCGCATTTTTGTTTTCCATTGTATTGTATAATACTGCAATTGTTTTGTGCTGTATTCCTCCTACACAGTGTACAgttttattgttatattattactattatcgCTGAGTTGACTGCTTAGAAACAAAAATGCAGATTTCTTATGGAAGCCGATAGCCTTGAATCTATAGAATTTTTATGCTGAAAAAGAGAATGTTTAGACAATCTTGTCACGATCAGAAGCCGCTCAAAGCGCTGATCTCCAGTGGACGTTTTCCCGAAGAAATCATGGTTTTCAAATGTAcactttttatccttttttgaACCCTCTCTCCatttacttttttatgttttatgtttaaggCATGCAGGTTGAAATAAGCAAAATGTGAGTGTGCCAGTGTGTCAGGCCCTGAGGTAATGTCTGCCACCACATGACGGGCCGCATCGCACAAACTCTGGACTGTATACGCACACACAGTATAAcctaaattaaatgtaaaatcacAATCTTTTAGTATTTCCCCCTTACTACTTTgtcctttttaaattaaacGTGTGTGCTTGCACTTtagattattttctttattttctttaaagaaatatcCCATTGCTGTAAAGCATGTTAAGTTTTTAGGTATTGTAGCTCAATCTTGATAATATGAATAGTTTTTGCATTCATATATTTGCTGCAATATTCTGAGCACAGAGGAAATTAGGGATCACACATTAAAGGAAGCTGTCCCTTGTcccacatttgtttttgtacTGTAAGAAAGAGCTTGGTTAGTTTTAACATCTTAAACACTTTTTAGATCTACTTTTCTGCCTTGTCTCAGGATGGTGGACGTTTTGTAGCTTGAAACGACTTTGTAAACGTGTAGGACTTGCCAACAACGTACTAATTTGAATGACTAAACATGCACCGTGGAATGGATAAGTATTAAATGTACTCCCAAGTGATGTGATTTTACAGCAGGTTGTTAATTATACAATTCaccatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtaagtatgtatgtatgagggAAACATACTGTTGTTGTACATAAGTAGGTAATCTGACTGTGAATCTCAACTGAAACAAAGCATTGATGTTCAAGACCTGACCATAATGAAATGTAATGATCCACAGTAACCCCTCATgcgtttttttgtttatttttaaacaaacacacacacaatatttacaTTCAGAACAATTTGGCATTAGGGCTGTATGAAAATACTGGGTCCCTTTCTTTTCATGAGTGTGAAAAGAAAGGGACCCAGTATAGTATAGTTATTTTGTACTTGTTATCTATATGATAAAACGTAAACCTGCAAGAGATAAACTTGTATCTATGCTACTGCTGCCTGCTTTCCACAGTCTGTCCAGCAGCGAGCCTAAGACGAAAGACTTATGTACTCTGACAGAGCGATGGTGTCTTTCTGATGGCTTATTGTCTGTGGACCAAGAAACTGAAATCTCCATTTTCTCTGTagctttacttcctgtctttttttctatactcaacaggttttattttattaatgcaTTTTGATGATGGAAGAGTCATTACTGCAAGCCACTTTGAATTTGTCTGTTCAGGACTGCTATGATATAACTTGTTAATGTGACTCTTGGATTGAATTAAAAATTGAAATGTTAACACAC

Function

symbol description
lpcat1 Predicted to enable O-acyltransferase activity. Predicted to be involved in phospholipid biosynthetic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Orthologous to human LPCAT1 (lysophosphatidylcholine acyltransferase 1).

NR:

description
PREDICTED: lysophosphatidylcholine acyltransferase 1

GO: NA

KEGG:

id description
K13510 LPCAT1_2; lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806257.1 True 5939 mRNA 0.41 14 15619516 15653052

Neighbor

gene id symbol gene type direction distance location
irx2a irx2,LOC102783739 coding upstream 205469 15408178 ~ 15414047 (+)
trnae-cuc_16 NA coding upstream 592863 15026582 ~ 15026653 (+)
dnah5 dnah5 coding upstream 745403 14762370 ~ 14874113 (+)
LOC120562066 NA coding upstream 914692 14703423 ~ 14704824 (+)
LOC120561617 NA coding upstream 999635 14611912 ~ 14619881 (+)
slc6a3 slc6a3 coding downstream 4189 15657241 ~ 15675222 (+)
LOC120563110 dcdc2,LOC102296430,LOC102788673 coding downstream 29367 15682419 ~ 15707502 (+)
mboat1 mboat1 coding downstream 842674 16495726 ~ 16508741 (+)
LOC120562688 tnfrsf11b,LOC103369092 coding downstream 979824 16632876 ~ 16718524 (+)
LOC120562690 NA coding downstream 1068584 16721636 ~ 16724556 (+)
G72680 NA non-coding upstream 29358 15589897 ~ 15590158 (+)
LOC120562980 NA non-coding upstream 456270 15100816 ~ 15163246 (+)
G72634 NA non-coding upstream 616382 15000671 ~ 15003134 (+)
LOC120562067 NA non-coding upstream 973728 14644376 ~ 14645788 (+)
G72561 LOC103365327 non-coding upstream 978748 14637870 ~ 14640768 (+)
G72704 NA non-coding downstream 183910 15836962 ~ 15844938 (+)
G72705 NA non-coding downstream 191258 15844310 ~ 15847320 (+)
LOC120562129 NA non-coding downstream 316125 15969177 ~ 16009134 (+)
G72775 NA non-coding downstream 522042 16175094 ~ 16181930 (+)
G72795 e2f3 non-coding downstream 827627 16480679 ~ 16481932 (+)
irx4a LOC103360443,LOC102233360,LOC103478376,LOC108232226,LOC101474805,LOC102784018,LOC102295185,LOC102202030,LOC104961814,LOC103145173 other upstream 59224 15553464 ~ 15560292 (+)
LOC120561718 LOC107101581 other upstream 986795 14626478 ~ 14632721 (+)
G72506 NA other upstream 1193336 14425794 ~ 14426180 (+)
LOC120562174 rbms3,LOC101066789,LOC103370884 other upstream 1249425 14175817 ~ 14370091 (+)
cmc1 cmc1 other upstream 1475220 14133584 ~ 14144296 (+)
G72750 LOC104952694,LOC106925895 other downstream 365307 16018359 ~ 16072201 (+)
G73031 LOC103366415 other downstream 1796533 17449585 ~ 17452568 (+)
ubxn11 NA other downstream 1803591 17456643 ~ 17461118 (+)
G73123 phactr4 other downstream 1992461 17645513 ~ 17647186 (+)
paqr7b LOC107588505,LOC104938075,LOC103388542 other downstream 2097878 17750930 ~ 17779130 (+)

Expression


Co-expression Network