LOC120562542 (LOC100712213,LOC102785254,LOC101485676,LOC102294439)


Basic Information

Item Value
gene id LOC120562542
gene name LOC100712213,LOC102785254,LOC101485676,LOC102294439
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22733327 ~ 22740710 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806273.1
TCTTAGTTTAATTAAGCTAAACCAGCAGGGCCACGCTGCAGTTCCTGTTAACAGCGGAGGTTTCAGAAATCGTTTTGATTGTGTGAGAAGTGAAACGGAGGCTCTTGGAGGAAAAGCTTTGGAGGATAAAACGGTTTGAagtgagttggaggtgtttgtCTCCTGCAGGATGCTGCCTCGGCGGATGCTGTGGGGCGCTGTGGTGCGTCAGGTCGCTCCACGTCTGACCTACAGCACTGCAGCACAGCCGCAGGTAAAGCAAAAAAAGACCACATTTGGCCCTCTGAGTGACGAAGACCGGATATTCACCAACTTATATGGCCGGCATGACTGGAGACTCGAGGGCTCACTGAGACGAGGAGACTGGTATAAGACTAAGGAGATAATACTGAAGGGATCAGACTGGATCCTAAATGAGGTGAAAATCTCAGGGCTTCgaggcagaggaggagcagGCTTCCCCACTGGCATGAAGTGGAGCTTCATGAACAAACCCAGCGATGGCAGGCCTAAGTACCTGGTGGTGAATGCTGATGAGGGGGAGCCTGGGACATGTAAAGACCGTGAGATAATGCGTCACGACCCCCATAAGCTAATAGAAGGCTGCCTGATTGCTGGGAGAGCCATGGGCGCTCGTGCTGCGTACATCTACATCAGAGGAGAGTTTTATAATGAGTCGTCAAATCTACAGGTGGCTATCAATGAGGCATACAAAGCAGGGCTGATAGGGAAGAATGCCTGCGGCTCTGGGTTTGACTTTGATGTGTTTGTGATGAGGGGGGCCGGAGCCTACATCTGCGGGGAGGAGACGGCTCTCATCGAGTCTCTTGAGGGCAAACAAGGGAAACCTAGACTCAAGCCGCCATTCCCTGCAGACATAGGGGTGTTTGGATGCCCGACAACAGTTTCCAACGTGGAAACAGTTGCTGTGGCGCCTGCGATCTGTCGTCGAGGCGGAGCTTGGTTTGCCAGCTTTGGGAGAGAGAGGAACTCTGGGACGAAGCTGTTCAACATCTCCGGTCACGTGAACACACCATGCACGGTGGAGGAGGAGATGTCTATTCCTCTGAGGGAGCTAATAGAGAGAcacgcagGGGGAGTGAGGGGTGGCTGGGACAATCTATTAGGAGTTATCCCAGGGGGGTCCTCCACTCCCATCATCCCTCGCCATGTGTGCGACGATGTTTTGATGGATTTCGATGACCTGGTCCGTGCTGAGACTGCACTGGGAACTGCTGCCATCATAGTTTTGGATAAATCGACCGATGTGATCCGAGCCATCGCACGTTTGGTTGAGTTCTACAAACATGAGAGCTGTGGCCAGTGCACCCCCTGCAGAGAGGGAGTCGACTGGATGGATAAAATGATGTGGAGGTTTGTTCGAGGAGAAGCAGCTGCTTCAGAGATCGACATGATCTGGGAGCTAAGCAAGCAAATAGAGGGACACACCATCTGTGCCCTGGGGGACGGAGCTGCCTGGCCTGTGCAGGGACTGATCCGCCACTTCCGGCCGGTCATGGAGAGCCGCATCGCTCAGTATAACAAGAAAAACCCTCCAAGAGAGCCAGAGATAGAGATGATCTGAAGCTGTGCAGGGCTCCATTTCAGGATTCAGCCCTTCATAACAGTAATAATAGCTCATTGTGCTATATGACATTGTGtaccttattttatttttattttttaaatagtttttaaatatgaaaatatttctgttcTGATTAAGAATGCAAAATTGTACTGCTtaaatggcattacattttTTCCTTAAGTTTAAAAGTAATCATCATTTCAAAACCTTTACaggcaaaatgtttttcatgcAAGGATGAATATAAATTCTGCAGAAAGTTGGTCACTTAatccgtttttattttggcagGCAGAACTGTTGACAGCTAATTGGCAAATGTGAGGTTTGTGATGAAGTGTGGCAGAACAGACTTTAATAAGGAAAATACACGTTACTAAGAATCACAACTTCAAACACGGCAATAaattaagtttatttatttcataaaagCATGAAATAAATTCCATAGCTTTACTACATATTAGTCCAATAGGATCTGTACAAAAAGACCAGCATAGGAAAGGATGGTGTCACTGATCTGGAcagggaaaaggaaagaaaaggggGTAACAAAAAGCTGTACTAGGGACAAAATGAAAAGTGGTCAGTCATGTGCAACATCATTGCcttgtgttattgtttttacaAAGACACTATATTCAGTAAACACGTCACCTGGCATCTGTTTTCAAACCATTCCAAATAAAACTGGAGGCAGAA

Function

NR:

description
PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial isoform X2

GO: NA

KEGG:

id description
K03942 NDUFV1; NADH dehydrogenase (ubiquinone) flavoprotein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806273.1 True 2293 mRNA 0.47 10 22733327 22740710

Neighbor

gene id symbol gene type direction distance location
zbtb7b LOC104949237,LOC102209066,LOC102295659,LOC100711944 coding upstream 886 22710139 ~ 22732441 (+)
pklr LOC100711399,LOC101487503,LOC102296262,LOC108235536 coding upstream 45367 22674277 ~ 22687960 (+)
LOC120562535 LOC103478110,LOC102236274,LOC103136813,LOC106922010,LOC106957061,LOC107088793 coding upstream 59193 22667916 ~ 22674134 (+)
clk2b LOC104944907,LOC101465036,LOC102211389,LOC100710865,LOC102298503,LOC102787711 coding upstream 76229 22651638 ~ 22657098 (+)
LOC120561656 NA coding upstream 81940 22643346 ~ 22651387 (+)
kcnj14 kcnj14,LOC104949235,LOC102784483 coding downstream 26417 22767127 ~ 22784419 (+)
si:ch211-120k19.1 LOC103388283,LOC101483136 coding downstream 87097 22827807 ~ 22830355 (+)
rpl18 rpl18 coding downstream 91646 22832356 ~ 22837799 (+)
sphk2 LOC104960464,LOC103388269,LOC106096428 coding downstream 97695 22838405 ~ 22849527 (+)
cyth2 cyth2,LOC103136639,LOC106520542,LOC107088802 coding downstream 111648 22852358 ~ 22864843 (+)
G74769 NA non-coding upstream 477849 22255271 ~ 22255478 (+)
G74765 NA non-coding upstream 487564 22245489 ~ 22245763 (+)
G74764 NA non-coding upstream 490294 22242817 ~ 22243033 (+)
G74760 NA non-coding upstream 549290 22183783 ~ 22184037 (+)
G74737 NA non-coding upstream 603413 22129652 ~ 22129914 (+)
G75042 NA non-coding downstream 178042 22918752 ~ 22920103 (+)
G75045 NA non-coding downstream 183882 22924592 ~ 22925155 (+)
G75065 NA non-coding downstream 242182 22982892 ~ 22987322 (+)
G75069 NA non-coding downstream 253710 22994420 ~ 22994706 (+)
G75077 LOC104960445 non-coding downstream 276097 23016807 ~ 23018595 (+)
LOC120562539 LOC102295960,LOC100711672,LOC102209551,LOC101487210,LOC102786116 other upstream 27911 22689070 ~ 22705416 (+)
LOC120562537 NA other upstream 65442 22660479 ~ 22667885 (+)
arnt NA other upstream 107374 22610018 ~ 22625953 (+)
celf3b LOC104944900,LOC100708447,LOC107088821,LOC107379582 other upstream 147755 22559944 ~ 22585572 (+)
rprd2b NA other upstream 243383 22469978 ~ 22489944 (+)
myh14 NA other downstream 44868 22785578 ~ 22820053 (+)
cnot3a cnot3 other downstream 159379 22900089 ~ 22911520 (+)
LOC120562293 LOC103360151,LOC102310947,LOC102785150 other downstream 329877 23070587 ~ 23083147 (+)
LOC120562612 LOC103367657,LOC105025867,LOC103136704 other downstream 750415 23491125 ~ 23494034 (+)
trpv6 LOC104929027,LOC104960406,LOC103388006,LOC107082237 other downstream 820138 23560848 ~ 23571243 (+)

Expression


Co-expression Network