fam171a1 (fam171a1)


Basic Information

Item Value
gene id fam171a1
gene name fam171a1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21361594 ~ 21387306 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806311.1
GACCGCAGATATTAGCAGTGCTGCGTATGGAAGAAGCCGCCTGTTGGTGCTGTTTTGGGGCATGTGGCTCAGAGGATTGGTGGGGCCGTCTTCCTCTCTGACCCGTCGATTAAAAAAAACCGACCGAGCGGCACAAGGGCCGGGGATGCACAGAGGAAACACGGCTTTAAAGGCAAAAAACAGGAATGCTGATGCTGCGAAACATGGAGTTTTGCCTCCTTTGCGCAATAAACCGAGTTTACGCTGATGTGGCTGGTCAGTgagtttttaaaaagcaaacGATTTGGCTtctactttatttttatttaaccgtTGATACACATCTGCAATGATGTGGGCTGTGAATTGGAGACAAGCTGCTGCAATTTTAGTCTGCCTTTTGGGATACCTTGTCAACAGAGCTGTCGCCaaaacgttaccggaggacacAGTCACACAAGAGGTGACTCTGAAGGTTCACCTGAGCGATGCCAGCACTCACCAGCCCTTGGGAGGAGCCACCATACAGCTCTTCGCCAACCAGACTTCTGTAACCACGGAAACCTCATCACCTGATGGCAACACCTACTTGCGCTTCCCCTACCGCCTTGGGACACCGTTGGTCGTCACCGCATCCAAACAGGGATATGTGCCAAACTCTGTGCCCTGGAGTCCCTCCAGATTACCtgTATTTTCCTCGATCAGCCTGGACCTGCTACCAGAAAGAGCTGCTACTCTGATGGTGTATGAAGATGTTGTGGAGATTGTTTCAGGCTTACaagGTTTCAGGCATCAGCCCAGTGTTTATTTCCAGCGTAGAGCTCTGAGTCTTCCCTCCAACACATCCTACGCCAACCTTACAGCTCTGCTCACCGTGGCCAGTTCCCCCTCGCATATCCAGCACTTTCCCCACCTGCAGGTCCTCAGCGGCAACGGCACAGGGACAGAGAAGGGATTTGAGTTGACTCCTGTAGTGGCCATCTCTGTTCACTTATTGGCCAGCGACGGAGTGGAGCTGCAGGTGACTGGGCCAATCACGGTCTCCATCCCCCTGCCGGCTGACAGTGGCCTGAAGGAAAATGATCACATCCCTGCTTGGAGATTTGACCCACACTTGGgttCCTGGATAAAGAGCAGTTGGGGTCACGTGCAGCGGGAGGGCAACCAGCTCACTTTGACCTACATCGCTCCCCAGCTGGGATATTGGGTGGCCGCCATGTCCCCACTACACTCAGGTCCAGTGTTTGCGAAGGACTTCAGCACATACCACACTGTGTTCCTGTTGGCTATACTGGGAGGCATGGCTCTCATCCTGCTCTGCCTACTCTGCCTCTTGTTGTACTACTGCAGACGTCGTTGTTTGAAGCCTCGAGTGTCTCACCGCAAGCTCACACTGTCCTCTGGTCTGGACGGCAGTAAGAGGGACCAAGCCACCTCCATGTCCCATCTGAACCTCATCAGCAATGAGGTGCAGCTGGAACTTGTTTCCACAGCGACTGAGCCCGACATGACCACGCCAATGTTGAAGCCTTCTTCATATGAGCTCCAAGACAATCATCGTCAACACAGCCTAATCCATCACAGCAAACACAGCCGCTCCTCGCTCGGCAACAACAGCCACCACGGCTCATCTCTCGGCAATCTGACGCCTCGCAGCAGAGACTACCGGCAGTCTGTGGAGACGTTCCAATTAAAGGCTGCCCTTTCAGGCGGAACAGACAGAGGCTACCGTCAATCATATACCTCCGTCTGCTCATCCAGCAACCCGATTTCAGATGCACTGTCATCAACCAATCACGGAAAGGTGTTGGCTAATCAGATGAGCAGTGTCAGCATTGTTGATTGCAtctccccttcctctcctcctcactcCCCCAGTAGAGGGGAGGGATGTGAGTGCAGAGCTCCTGACTACCTTCTGTCCCGCTCTGTGGACCACCTGGAGCGTCCCAGCCCCCCCTTGCTCTCCCGGCCGGGCCAGCTGCTCTGCTGCGGCTCTGTGGACCTGCTGAGTGGAGGAGAAGGCTACCCGAGAGTGCGTCCTACACTGGTGATCCCAGCGCACTACATGCGTCTGCCTGGGGAGCACCCTCTGTCTGGTCAGGCCCTCCTGCTGCAGACTGACCAGCAGAGTGACTTGGAGACCATCCAGGCTGAGCTCAATGCCTCACATTCCCAGCAGCCCCTTGGGCAAACCCCCACTGACTGCACCCCACGTCCAACCAAGCAGGGGGACGGAGAAAGGCATGGCCTGTCAGAGTCTCTGTCTATCCCAGCAGCGCTTGGGGAAACGGGTCTAGTGGAAATAAACAGTGAGGACACCTTGTTGGCTGAAAAGACTTTAATGGAGCTCAGAGGAGGGAAGCCTCTGCCTCACCCACGAGCCTGGTTTGTCTCACTTGATGGACGCTCCAACGCTCATATTCGCCACTCCTACATTGATCTCCAGCGGGCAGGGTGCCACAGCAACGCGCCAGGTGGAGGAGGTCAGCAAGGAAATGTCAACGGTGGGAGGCGTGGCAACGATGCCAGTCTGGACTCTGGTGTGGACCTGAACGAACTGAGAGTGGGTCGCAGGGGGAGAGACGGAGGACGGGAGGAAAGAGATATTGAGAAAAACAGGGCAAAGGGGACCGCACCAGCCATGGCCTACACTCAGCTGGTGTATGTGGATGATCTGGACGGGGGAGGCAGCGAGGAGGAGATGCCCAAATGCAGCCCACAGGACAGTAAAACAGGACCCATCTTGTCAGACAAAGCTGAGGGTCAGAGAGGGGATCAGGGACAGGGGGatgtggaggagaaaagagtAGAGGAAGTACAAATACAAGAAGAACCACCCTCACTTTCCTCTTCATCCCctgcttctcctcctcccctgccaaCACCAGAGGAAGAGACGTTCAGGACTGATCATGCACTTCTGTCAGTCTCTCCGGATGACGATGCAGCACACgaggatggagaggaggaggaggaggaaaagaagagTCCTtggcagaagagagaggagcGACCCCTGCTGGCTTTGAACCTGAAATGATCCACAGAGGACCACttaaaggataggttcacaTCTTTCCTTAATAGAATACTCACATGCCCATATGTATATTGAAAGCGTTTTTGGTTGCTGTAATTGTTCCTCCTGTATATACTGGACCTTCTTAAAGCGATTTCAATTTGAGTTATGggggacaaaatccacagtcctcGTTGAATGCTAAAATTTAGGCTTGGAGCCTGAGAATCCTCAGGTTTTAAGTTTTTTTCAGTATTGAAGTAATCCAGTGATAATTGTCTGTACATGCATGGATACACTGCAAATGTTCAGAATGAGAACCCTGTCTCTTACATTAAAATCACTTTAGGAAGGGATATTGTTGCTGTTAGTGTAGACAGCAGGAACAAGTAACTGTTCAGTTGTACGAATGGGAACATCAGTTTTGTTTCGACATAGACTTGAAAAAATTTGAACTTATCCTTTTAATCATGAC
>XM_039806312.1
CCCCTTACAACCACAATCCACAATCACTGGGAGTGGGACAGGAAGTGAGGTCATGATCTCTTTCtcttacacactcacacaaacgcacacaaaccCACAATCTTAATGCAATGGGGAGTTTCTGTCCGACGTCTTTTTGTTTTCCAATCCCGTAGCTGTGACAGTGCAAATGTAATAACGTGGAGGAATGAAGTGAAGGGTCAGAAAGCAGCCACAGAGCAGATCTTCACACCAAACCTTTCAGGAGGTGACTCTGAAGGTTCACCTGAGCGATGCCAGCACTCACCAGCCCTTGGGAGGAGCCACCATACAGCTCTTCGCCAACCAGACTTCTGTAACCACGGAAACCTCATCACCTGATGGCAACACCTACTTGCGCTTCCCCTACCGCCTTGGGACACCGTTGGTCGTCACCGCATCCAAACAGGGATATGTGCCAAACTCTGTGCCCTGGAGTCCCTCCAGATTACCtgTATTTTCCTCGATCAGCCTGGACCTGCTACCAGAAAGAGCTGCTACTCTGATGGTGTATGAAGATGTTGTGGAGATTGTTTCAGGCTTACaagGTTTCAGGCATCAGCCCAGTGTTTATTTCCAGCGTAGAGCTCTGAGTCTTCCCTCCAACACATCCTACGCCAACCTTACAGCTCTGCTCACCGTGGCCAGTTCCCCCTCGCATATCCAGCACTTTCCCCACCTGCAGGTCCTCAGCGGCAACGGCACAGGGACAGAGAAGGGATTTGAGTTGACTCCTGTAGTGGCCATCTCTGTTCACTTATTGGCCAGCGACGGAGTGGAGCTGCAGGTGACTGGGCCAATCACGGTCTCCATCCCCCTGCCGGCTGACAGTGGCCTGAAGGAAAATGATCACATCCCTGCTTGGAGATTTGACCCACACTTGGgttCCTGGATAAAGAGCAGTTGGGGTCACGTGCAGCGGGAGGGCAACCAGCTCACTTTGACCTACATCGCTCCCCAGCTGGGATATTGGGTGGCCGCCATGTCCCCACTACACTCAGGTCCAGTGTTTGCGAAGGACTTCAGCACATACCACACTGTGTTCCTGTTGGCTATACTGGGAGGCATGGCTCTCATCCTGCTCTGCCTACTCTGCCTCTTGTTGTACTACTGCAGACGTCGTTGTTTGAAGCCTCGAGTGTCTCACCGCAAGCTCACACTGTCCTCTGGTCTGGACGGCAGTAAGAGGGACCAAGCCACCTCCATGTCCCATCTGAACCTCATCAGCAATGAGGTGCAGCTGGAACTTGTTTCCACAGCGACTGAGCCCGACATGACCACGCCAATGTTGAAGCCTTCTTCATATGAGCTCCAAGACAATCATCGTCAACACAGCCTAATCCATCACAGCAAACACAGCCGCTCCTCGCTCGGCAACAACAGCCACCACGGCTCATCTCTCGGCAATCTGACGCCTCGCAGCAGAGACTACCGGCAGTCTGTGGAGACGTTCCAATTAAAGGCTGCCCTTTCAGGCGGAACAGACAGAGGCTACCGTCAATCATATACCTCCGTCTGCTCATCCAGCAACCCGATTTCAGATGCACTGTCATCAACCAATCACGGAAAGGTGTTGGCTAATCAGATGAGCAGTGTCAGCATTGTTGATTGCAtctccccttcctctcctcctcactcCCCCAGTAGAGGGGAGGGATGTGAGTGCAGAGCTCCTGACTACCTTCTGTCCCGCTCTGTGGACCACCTGGAGCGTCCCAGCCCCCCCTTGCTCTCCCGGCCGGGCCAGCTGCTCTGCTGCGGCTCTGTGGACCTGCTGAGTGGAGGAGAAGGCTACCCGAGAGTGCGTCCTACACTGGTGATCCCAGCGCACTACATGCGTCTGCCTGGGGAGCACCCTCTGTCTGGTCAGGCCCTCCTGCTGCAGACTGACCAGCAGAGTGACTTGGAGACCATCCAGGCTGAGCTCAATGCCTCACATTCCCAGCAGCCCCTTGGGCAAACCCCCACTGACTGCACCCCACGTCCAACCAAGCAGGGGGACGGAGAAAGGCATGGCCTGTCAGAGTCTCTGTCTATCCCAGCAGCGCTTGGGGAAACGGGTCTAGTGGAAATAAACAGTGAGGACACCTTGTTGGCTGAAAAGACTTTAATGGAGCTCAGAGGAGGGAAGCCTCTGCCTCACCCACGAGCCTGGTTTGTCTCACTTGATGGACGCTCCAACGCTCATATTCGCCACTCCTACATTGATCTCCAGCGGGCAGGGTGCCACAGCAACGCGCCAGGTGGAGGAGGTCAGCAAGGAAATGTCAACGGTGGGAGGCGTGGCAACGATGCCAGTCTGGACTCTGGTGTGGACCTGAACGAACTGAGAGTGGGTCGCAGGGGGAGAGACGGAGGACGGGAGGAAAGAGATATTGAGAAAAACAGGGCAAAGGGGACCGCACCAGCCATGGCCTACACTCAGCTGGTGTATGTGGATGATCTGGACGGGGGAGGCAGCGAGGAGGAGATGCCCAAATGCAGCCCACAGGACAGTAAAACAGGACCCATCTTGTCAGACAAAGCTGAGGGTCAGAGAGGGGATCAGGGACAGGGGGatgtggaggagaaaagagtAGAGGAAGTACAAATACAAGAAGAACCACCCTCACTTTCCTCTTCATCCCctgcttctcctcctcccctgccaaCACCAGAGGAAGAGACGTTCAGGACTGATCATGCACTTCTGTCAGTCTCTCCGGATGACGATGCAGCACACgaggatggagaggaggaggaggaggaaaagaagagTCCTtggcagaagagagaggagcGACCCCTGCTGGCTTTGAACCTGAAATGATCCACAGAGGACCACttaaaggataggttcacaTCTTTCCTTAATAGAATACTCACATGCCCATATGTATATTGAAAGCGTTTTTGGTTGCTGTAATTGTTCCTCCTGTATATACTGGACCTTCTTAAAGCGATTTCAATTTGAGTTATGggggacaaaatccacagtcctcGTTGAATGCTAAAATTTAGGCTTGGAGCCTGAGAATCCTCAGGTTTTAAGTTTTTTTCAGTATTGAAGTAATCCAGTGATAATTGTCTGTACATGCATGGATACACTGCAAATGTTCAGAATGAGAACCCTGTCTCTTACATTAAAATCACTTTAGGAAGGGATATTGTTGCTGTTAGTGTAGACAGCAGGAACAAGTAACTGTTCAGTTGTACGAATGGGAACATCAGTTTTGTTTCGACATAGACTTGAAAAAATTTGAACTTATCCTTTTAATCATGAC

Function

symbol description
fam171a1 Predicted to be involved in regulation of cell shape and stress fiber assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human FAM171A1 (family with sequence similarity 171 member A1).

NR:

description
PREDICTED: protein FAM171A1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806311.1 True 3476 mRNA 0.53 9 21361594 21387306
XM_039806312.1 False 3281 mRNA 0.53 9 21369561 21387306

Neighbor

gene id symbol gene type direction distance location
l3mbtl1b l3mbtl3 coding upstream 32147 21315069 ~ 21329447 (+)
sgk2b NA coding upstream 49528 21308878 ~ 21312066 (+)
esrp1 esrp1 coding upstream 92740 21256725 ~ 21268854 (+)
rnf41l LOC102792600,LOC102077802,LOC102303797,LOC101478352,LOC102199951,LOC103373185 coding upstream 121166 21235187 ~ 21240428 (+)
pdp1 pdp1 coding upstream 170774 21183951 ~ 21190820 (+)
nmt2 nmt2 coding downstream 2583 21389889 ~ 21396526 (+)
LOC120563194 NA coding downstream 71193 21458499 ~ 21461211 (+)
rundc3b rundc3b coding downstream 79763 21467069 ~ 21478945 (+)
dbf4 NA coding downstream 97743 21485049 ~ 21491551 (+)
adam22 adam22 coding downstream 106108 21493414 ~ 21556018 (+)
G74288 NA non-coding upstream 69214 21291042 ~ 21292380 (+)
G74287 NA non-coding upstream 71280 21289553 ~ 21290314 (+)
G74286 NA non-coding upstream 72219 21289171 ~ 21289375 (+)
G74274 kiaa1429,LOC104941925 non-coding upstream 118027 21243229 ~ 21243567 (+)
G74233 NA non-coding upstream 209082 21150389 ~ 21152512 (+)
LOC120562851 NA non-coding downstream 337642 21724948 ~ 21725705 (+)
G74673 NA non-coding downstream 648972 22036278 ~ 22036659 (+)
G74729 NA non-coding downstream 728310 22115616 ~ 22116026 (+)
G74732 NA non-coding downstream 732432 22119738 ~ 22121346 (+)
G74737 NA non-coding downstream 742346 22129652 ~ 22129914 (+)
LOC120563169 NA other upstream 24929 21331412 ~ 21336665 (+)
sec61b sec61b,LOC102796100 other upstream 350180 21008013 ~ 21011414 (+)
glipr2l glipr2 other upstream 756429 20600323 ~ 20605165 (+)
gra NA other upstream 1035633 20322330 ~ 20325961 (+)
si:ch211-257p13.3 kifc3,LOC102783047 other upstream 1134603 20214588 ~ 20226991 (+)
crot acbd7,crot,LOC102783617,LOC101470173 other downstream 15729 21403035 ~ 21415894 (+)
them4 LOC106592246,LOC104959154,LOC101466288,LOC107096308,LOC100702377,LOC105029233,LOC106575342 other downstream 211728 21599034 ~ 21603458 (+)
G74633 tuft1,LOC102781808 other downstream 382242 21769548 ~ 21770286 (+)
slc50a1 slc50a1 other downstream 696363 22083669 ~ 22091963 (+)
LOC120561539 NA other downstream 745272 22132578 ~ 22136234 (+)

Expression


Co-expression Network