pomgnt2 (pomgnt2)


Basic Information

Item Value
gene id pomgnt2
gene name pomgnt2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 8364356 ~ 8384620 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806352.1
CTCGGCGGTAGGCGGAGACTGGAGCCTACCAGCAGCCAGCAGAGTGGACGGTATCCAGCGGCagctgctccgtctctctcgtttatatactgtctatggtctctCTGCCGGTTCGCAGCTAGACTATTAGCCCGTCCCCGGAAACAGCAGCACCGAGAGGAGCTGCGCCGCGCCGACGGGAGGCGAGAGAGGAGCCGCGCCGAGAAGAGCCGCCGCCGCTGGTGCCCTGCCAGTCTCGGCTCTGCTCTGCTGTTGTGTCCCGCTGCATGGCTTGTGTTGCCCGCCGCTCAGCACCGTCCGTGGAGCTGCAGGAGGAGAGCTAACGCTAGCGCCGACCCAACCTGTCTGCTGCGAGGCAACGTTTCACCGAAGAGCCACGGTGTTGCCTGGCGGCGGATGTCTCGTCGCCTCCCTCTGAGGTCGGAGGCCAGCGGGAGCGGAGAGGAGGCTCGGCGGCAGCAGTGATGCGGACTACAGCGGCCGGCTGCAGGATGAGCGTGGGCGCGCTTCTCAACGGGCTGCTGGTCTCCGTCGTCGCAGCTCTGCTTTGGAAGTATTCCAAGCTGAGTGAGCACGCCGCCCTGCTGGAGGAAGAGCTGCACATGACACGGCAGTCCCAGGAGCTTTCGCAGGCCCACATCGACTACCACGTCGCCCTGCAGGCTCTTCAGGAGCACGGCACCCGCATGGTCTGCACCGGCAAGATGCACACCGACCGCATCTGCCGCTTCGACTACCTCTGCTACTGCTCGGAGGCAGAGGAGTTTGTGTTCTTCCACTCCAACTCCTCGGTCATGTTGCCCAACCTGGGGTCGAGGCGCTTCCAACCTGCCCTGCTGGACCTGTCCTCTGTAGAGGATCACAACACCCAGTACTTTAACTTTTTAGAGCTCCCAGTGGCTGCTTTGAAGTTCATGCCCAAGCCTGTGTTCGTACCAGATGTGACACTAATCCTTAACCGGTTTAATCCAGACAACCTAATGCACGTGTTCCACGATGACCTGATCCCAGCCTTCTACACTATGAAGCAGTATTCCGACTTGGATGACGAGGCGCGTTTGGTTTTTATGGAGGGCTGGGCTGAAGGCCCCCACTTTGACCTCTACAGACTGCTCAGCAGCAAGCAGCCGCTGCTCAAAGAGCAGCTGAGGAACTTTGGCAAGCTCATGTGTTTTACTAAATCTTACGTCGGCCTGTCCAAGATGACCACCTGGTACCAGTACGGTTTTGTTCAACCCCAGGGGCCCAAAGCCAACATGCTGGTCTCAGGAAATGAGATCCGGCAGTTTGCCAGGGCTCTGATGGAGAAAATGAACATCACAAGGggggaggaagtggagaagGACGGAGGGAACGCCGAAGACGATAAAGAGAAAAGGGCTGAATACATAGTTGTGTTCAGTCGTTCAGCAACCAGGCTGATCGTGAACGAAGCGGCGCTAATCATGGCACTGGCCCAGGAGTTCCAGATGAGAGTGGTCACAGTGTCCCTGGAGGAGCAGTCTTTCCCCGGTATCGTCCAGGTGATCAGCGGGGCTTCCATGTTGGTCAGTATGCATGGGGCTCAGCTGAtcacctctctcttcctccccagAGGAGCTGCCGTGGTGGAGCTGTTCCCGTTTGCAGTGAACCCAGAGCAGTACACCCCGTACAAAACCCTAGCCACCCTCCCAGGCATGGACCTTCACTACGTCTCCTGGAGGAACACCAAGGAGGAGAACACCATCACCCACCCAGACAGACCCTGGGAACAAGGGGGCATCGCCCACTTGGAGAAGGAGGAGCGAGAGCGAATACTGGCGAGCAAAGACGTCCCCCGGCACCTGTGCTGCCGCAACCCAGAGTGGCTCTACCGGATCTACCAGGACACTTTGGTGGACATCCCTTCCTTTGTGGAAGTCCTCAAAGAGGGCATGAAGACAAAGCCCAGCGTGAAGAAGTCCAAGTCGGCCAGCACCGTCCACCCAGGCCGGGTCAGAGAAGCCCAGTGTCAGACCTTAGTCCAGACCCCTAACGAGGCTAAACTCACCGTCTCCTGGCAGATCCCGTGGAACCTGAAGTACCTGAAGGTGAGAGAGGTGAAGTACGAGGTGTGGATCCAGGAGCAGGGAGAGAACACATACATGCCTTACATCCTCCCCCAGCAGAACTACACCTTTTCAGAGAACATCAAGCCCTTCACCACCTACCTGGTGTGGGTCCGGTGCATCTTCAACAAGAACTTGCTGGGTCCCTTCGCAGATGTTCTGATGTGCAGGACCTAACCCTAACACTTCTACACAAAGCTTGTTCCAGACAATCCGTTGGAACAGTGGAGTGTTGGGTTACAGTTTGTCCAGTTATTTGTCAGATCCGTCCAATCCTAGAGCAGGCTGCTGAACTCTTGCCCAGCGCTGTTTTCCTTGGCCAgcacagacaacaaagatactTCTGCTAGAACTGCAAAAGACTGAACCACAGGGTCAGAATTCAGCGGCATCGGCCGTCAATGAATGGAACGGGTATTTCCTGTACCTAATGAAAGAAGTGAAAGTGCTATGTCTCTACTGAAAATACCAGAACTTAAATCAGCAGATTTATTTATGTgcaaataatatataacatgtttttttacgTATAAGTCCAAACACTGGTTCTTTACCTTTTACAGTATGCAATATAGCTTTTCTGTGAAGATCCTAAAAAAGATTTTAGACTAGCAAGATTTGTAATGTTTTCTGACTTGGTCCAGTGTCTCCTGTGTGCGTGATACCTGTGTGACTTAGTTTACCTACCAGTTGTCTGATTCCATGCACCATTGTCTGCAGAACCTAGCCAAAACCAAAGCAACATTTTCCATCATTCATGCCGTATTACTTTTTCACGTTCTACGTCTCTCCCACTCCTAATGTTGGCTCAGATTTATGCAGTTTTAAGCCTCTAAAGATATTGTAAAGGATTGGTGTAAGAGAACTGTCAAGCAAGAGTTTTCATGATTGCCACAATAATCAAGGTTTCTGACATAGGTGGAATTTCATTCCATGGAGCATTTTTGGGATGAAATATCTTCAAACTGTTCTCTTCCAAGTGTTTGGGTTTCCACAGTGCCCAGCCGCAAATTATCGGTTTTACTGCATGAATAAAAGATTTCTCTCTAATTGGCACTAATTACGACCATAACTATTATAATTTTGAGTGGAGAGTGAATCGAGTTCGCCAGGCTATAATTAGTAGACCGTCAGATTTGATTGCATTTCCATTATGATAAGAAGGCATGTTGCTGCTTATGATTAACTAAAATAGATTCCCAGCAATGTGTCTTAACTTTTCAAGAAGAATGTTGAGATTGAAACAGACAAGCTGGCTGTTTCTAAGAAAGTGCTGCTTGTTGcttgatgtgtatgtgtgtgtgtggatgtgtgtgtgtgtgcgcgcacgctGTAGCAAAAGATGGTTTATGGCAcaagttaaaggtgctctaagcgacgttgggtgatgtcacttcttgttgacgttcaaagtattgtgaaacaaaacggaggctagctggcccctccctcctcctcatcccgtcccctctccctc
>XM_039806353.1
aagatgacagagaggaagaggaggctgcagtaacccctggaccatatgGTGTTGCCTGGCGGCGGATGTCTCGTCGCCTCCCTCTGAGGTCGGAGGCCAGCGGGAGCGGAGAGGAGGCTCGGCGGCAGCAGTGATGCGGACTACAGCGGCCGGCTGCAGGATGAGCGTGGGCGCGCTTCTCAACGGGCTGCTGGTCTCCGTCGTCGCAGCTCTGCTTTGGAAGTATTCCAAGCTGAGTGAGCACGCCGCCCTGCTGGAGGAAGAGCTGCACATGACACGGCAGTCCCAGGAGCTTTCGCAGGCCCACATCGACTACCACGTCGCCCTGCAGGCTCTTCAGGAGCACGGCACCCGCATGGTCTGCACCGGCAAGATGCACACCGACCGCATCTGCCGCTTCGACTACCTCTGCTACTGCTCGGAGGCAGAGGAGTTTGTGTTCTTCCACTCCAACTCCTCGGTCATGTTGCCCAACCTGGGGTCGAGGCGCTTCCAACCTGCCCTGCTGGACCTGTCCTCTGTAGAGGATCACAACACCCAGTACTTTAACTTTTTAGAGCTCCCAGTGGCTGCTTTGAAGTTCATGCCCAAGCCTGTGTTCGTACCAGATGTGACACTAATCCTTAACCGGTTTAATCCAGACAACCTAATGCACGTGTTCCACGATGACCTGATCCCAGCCTTCTACACTATGAAGCAGTATTCCGACTTGGATGACGAGGCGCGTTTGGTTTTTATGGAGGGCTGGGCTGAAGGCCCCCACTTTGACCTCTACAGACTGCTCAGCAGCAAGCAGCCGCTGCTCAAAGAGCAGCTGAGGAACTTTGGCAAGCTCATGTGTTTTACTAAATCTTACGTCGGCCTGTCCAAGATGACCACCTGGTACCAGTACGGTTTTGTTCAACCCCAGGGGCCCAAAGCCAACATGCTGGTCTCAGGAAATGAGATCCGGCAGTTTGCCAGGGCTCTGATGGAGAAAATGAACATCACAAGGggggaggaagtggagaagGACGGAGGGAACGCCGAAGACGATAAAGAGAAAAGGGCTGAATACATAGTTGTGTTCAGTCGTTCAGCAACCAGGCTGATCGTGAACGAAGCGGCGCTAATCATGGCACTGGCCCAGGAGTTCCAGATGAGAGTGGTCACAGTGTCCCTGGAGGAGCAGTCTTTCCCCGGTATCGTCCAGGTGATCAGCGGGGCTTCCATGTTGGTCAGTATGCATGGGGCTCAGCTGAtcacctctctcttcctccccagAGGAGCTGCCGTGGTGGAGCTGTTCCCGTTTGCAGTGAACCCAGAGCAGTACACCCCGTACAAAACCCTAGCCACCCTCCCAGGCATGGACCTTCACTACGTCTCCTGGAGGAACACCAAGGAGGAGAACACCATCACCCACCCAGACAGACCCTGGGAACAAGGGGGCATCGCCCACTTGGAGAAGGAGGAGCGAGAGCGAATACTGGCGAGCAAAGACGTCCCCCGGCACCTGTGCTGCCGCAACCCAGAGTGGCTCTACCGGATCTACCAGGACACTTTGGTGGACATCCCTTCCTTTGTGGAAGTCCTCAAAGAGGGCATGAAGACAAAGCCCAGCGTGAAGAAGTCCAAGTCGGCCAGCACCGTCCACCCAGGCCGGGTCAGAGAAGCCCAGTGTCAGACCTTAGTCCAGACCCCTAACGAGGCTAAACTCACCGTCTCCTGGCAGATCCCGTGGAACCTGAAGTACCTGAAGGTGAGAGAGGTGAAGTACGAGGTGTGGATCCAGGAGCAGGGAGAGAACACATACATGCCTTACATCCTCCCCCAGCAGAACTACACCTTTTCAGAGAACATCAAGCCCTTCACCACCTACCTGGTGTGGGTCCGGTGCATCTTCAACAAGAACTTGCTGGGTCCCTTCGCAGATGTTCTGATGTGCAGGACCTAACCCTAACACTTCTACACAAAGCTTGTTCCAGACAATCCGTTGGAACAGTGGAGTGTTGGGTTACAGTTTGTCCAGTTATTTGTCAGATCCGTCCAATCCTAGAGCAGGCTGCTGAACTCTTGCCCAGCGCTGTTTTCCTTGGCCAgcacagacaacaaagatactTCTGCTAGAACTGCAAAAGACTGAACCACAGGGTCAGAATTCAGCGGCATCGGCCGTCAATGAATGGAACGGGTATTTCCTGTACCTAATGAAAGAAGTGAAAGTGCTATGTCTCTACTGAAAATACCAGAACTTAAATCAGCAGATTTATTTATGTgcaaataatatataacatgtttttttacgTATAAGTCCAAACACTGGTTCTTTACCTTTTACAGTATGCAATATAGCTTTTCTGTGAAGATCCTAAAAAAGATTTTAGACTAGCAAGATTTGTAATGTTTTCTGACTTGGTCCAGTGTCTCCTGTGTGCGTGATACCTGTGTGACTTAGTTTACCTACCAGTTGTCTGATTCCATGCACCATTGTCTGCAGAACCTAGCCAAAACCAAAGCAACATTTTCCATCATTCATGCCGTATTACTTTTTCACGTTCTACGTCTCTCCCACTCCTAATGTTGGCTCAGATTTATGCAGTTTTAAGCCTCTAAAGATATTGTAAAGGATTGGTGTAAGAGAACTGTCAAGCAAGAGTTTTCATGATTGCCACAATAATCAAGGTTTCTGACATAGGTGGAATTTCATTCCATGGAGCATTTTTGGGATGAAATATCTTCAAACTGTTCTCTTCCAAGTGTTTGGGTTTCCACAGTGCCCAGCCGCAAATTATCGGTTTTACTGCATGAATAAAAGATTTCTCTCTAATTGGCACTAATTACGACCATAACTATTATAATTTTGAGTGGAGAGTGAATCGAGTTCGCCAGGCTATAATTAGTAGACCGTCAGATTTGATTGCATTTCCATTATGATAAGAAGGCATGTTGCTGCTTATGATTAACTAAAATAGATTCCCAGCAATGTGTCTTAACTTTTCAAGAAGAATGTTGAGATTGAAACAGACAAGCTGGCTGTTTCTAAGAAAGTGCTGCTTGTTGcttgatgtgtatgtgtgtgtgtggatgtgtgtgtgtgtgcgcgcacgctGTAGCAAAAGATGGTTTATGGCAcaagttaaaggtgctctaagcgacgttgggtgatgtcacttcttgttgacgttcaaagtattgtgaaacaaaacggaggctagctggcccctccctcctcctcatcccgtcccctctccctc

Function

symbol description
pomgnt2 Predicted to enable acetylglucosaminyltransferase activity and protein O-GlcNAc transferase activity. Acts upstream of or within brain development; muscle cell development; and retina development in camera-type eye. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in basal plate midbrain region; heart; nervous system; and somite. Human ortholog(s) of this gene implicated in congenital muscular dystrophy-dystroglycanopathy type A8. Orthologous to human POMGNT2 (protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)).

NR:

description
PREDICTED: protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

GO:

id name namespace
GO:0048747 muscle fiber development biological_process
GO:0008152 metabolic process biological_process
GO:0007420 brain development biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K18207 POMGNT2, GTDC2; protein O-mannose beta-1,4-N-acetylglucosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806352.1 True 3567 mRNA 0.52 2 8364356 8384620
XM_039806353.1 False 3236 mRNA 0.50 2 8366524 8384620

Neighbor

gene id symbol gene type direction distance location
zgc:114181 LOC104932954,LOC102799802,LOC101469313 coding upstream 165495 8187287 ~ 8198861 (+)
rwdd1 rwdd1 coding upstream 243030 8114521 ~ 8121326 (+)
LOC120561725 fam26e,LOC103478772,LOC106963711 coding upstream 254991 8104864 ~ 8109365 (+)
LOC120561897 NA coding upstream 259507 8104249 ~ 8104849 (+)
LOC120561724 fam26e,LOC103478772 coding upstream 259964 8096361 ~ 8104392 (+)
LOC120562241 NA coding downstream 70144 8454764 ~ 8504452 (+)
LOC120562991 LOC103388880 coding downstream 703564 9088184 ~ 9101502 (+)
popdc3 popdc3 coding downstream 731091 9115711 ~ 9123087 (+)
bves bves coding downstream 743230 9127850 ~ 9144754 (+)
hace1 hace1 coding downstream 762995 9147615 ~ 9190089 (+)
G71334 NA non-coding upstream 49595 8311851 ~ 8314761 (+)
G71326 NA non-coding upstream 53592 8227835 ~ 8310764 (+)
G71325 NA non-coding upstream 127638 8216677 ~ 8236718 (+)
G71323 NA non-coding upstream 164448 8198953 ~ 8199908 (+)
G71306 NA non-coding upstream 211890 8127699 ~ 8152466 (+)
LOC120562242 NA non-coding downstream 88650 8473270 ~ 8474591 (+)
G71348 NA non-coding downstream 122239 8506859 ~ 8514393 (+)
G71421 NA non-coding downstream 163912 8548532 ~ 8548790 (+)
G71424 NA non-coding downstream 167909 8552529 ~ 8555278 (+)
G71429 NA non-coding downstream 209413 8594033 ~ 8620339 (+)
ano10a ano10 other upstream 54612 8283380 ~ 8309744 (+)
G71309 NA other upstream 242117 8121601 ~ 8122239 (+)
G71147 LOC103388722,LOC104941093,LOC103369890 other upstream 562976 7731022 ~ 7801380 (+)
znrf2b znrf2 other upstream 864174 7456767 ~ 7500182 (+)
cdk14 cdk14 other upstream 1071921 7039163 ~ 7292435 (+)
G71470 rrp15,LOC106584165,LOC106605018 other downstream 364323 8748943 ~ 8751443 (+)
LOC120561899 LOC104959271 other downstream 375426 8760046 ~ 8776508 (+)
trnay-gua_1 NA other downstream 425731 8810351 ~ 8810439 (+)
trnay-gua_2 NA other downstream 426114 8810734 ~ 8810823 (+)
trnay-gua_3 NA other downstream 426489 8811109 ~ 8811197 (+)

Expression


Co-expression Network