LOC120562605 (LOC104951102)


Basic Information

Item Value
gene id LOC120562605
gene name LOC104951102
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 25506451 ~ 25510293 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806408.1
CTTAAAACGTTTGCAGGTATAAAGAGTCCAGACTAATCTGAACATCACACACTGACAGAGCTACAGAAGAACACTAGGAAAACATGAATCTTTTCCTTCTGCTGGTTGCGTTGGGACTCACAGGAGCGTCTCCCCTGGGGGACTCCAAGGTGTGCCAGCCTCACTCCAGACCCTGGCAGGTCTATCTGCATGGCGGAGGAGTGTCCTGCAGTGGAGCTCTTATCGACGCGTTGTGGATAGTAACCTCCTTTGACTGTGCACCCACATCCTACAACACCATCACATCTCTTGGGGAACATGACGTGACCCTGGATGAGGGCACTGAGCAGCACATCTACGTTGCTGACGTCATCCGTCACAGTCCCTACCGCTCGCCCCTCCACAGCCTCACGATGGTCCGTCTGGCCGAACCCGCCCGCTTCACCCAGCACGTCCAGCCCATCCCTCTGCCCAGCCGCTGCCCACAGCCTGGAGAGATCTGCCATGTCAGCGGCTGGGGATCCACCATCCCAAATCAATATGAGCCTTCTCAACGCCTGAAGTGTATAACTGTGCCTGTTGTGGATGACCAGACTTGCGTGAACACGTTCCCTGAGTTCCTGTTCTGGAGCATAGGCATGGTCTGCGCTGGACAAGCAAATGCAGATAACTGCATGcgCGATGGTGGCAGTGTGATGGTGTGTGACGGCCAGCTGCAGGGTGTGCAGTGGTTCAGTCACGGCTGCAGAAATCCAGCTGACCCCAGCGTCTACACCAAGCTGTGCATGTACAATGACTGGATCCACGATGTGATGGACCGCTACGTGCCCACTCTGCCAACTGAAACCACTCCAGGGATGACATGAGGCAGCAGAGAGACGTGTTCACAGAATACATGTAAATACtattacatactatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcaaatacGTCCTGACCACTTTACTGGGAAGGTTCAGTGTTGTGGAAACTATACTTAAACTCAAAATTTAGGGGTTCTGTTCATGAAAGTATTCATAAACATTATGGAGTACGCTCAGCTACAAAAGAAAATCTGTATGCAAACTCAAAATTGTAGATATTAACAACAACTAAATAAAATGTCATGTGTTCCGACA

Function

NR:

description
PREDICTED: trypsinogen-like protein 3

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806408.1 True 1150 mRNA 0.48 5 25506451 25510293

Neighbor

gene id symbol gene type direction distance location
apoa2 NA coding upstream 6987 25497690 ~ 25499464 (+)
apoc4 NA coding upstream 9805 25495718 ~ 25496646 (+)
apoeb NA coding upstream 18559 25485559 ~ 25487892 (+)
LOC120562741 NA coding upstream 25744 25479261 ~ 25480707 (+)
tomm40 tomm40,LOC106917673,LOC103139243,LOC107083531 coding upstream 62622 25436838 ~ 25443829 (+)
cited4b LOC104958901,LOC106523762 coding downstream 364384 25874677 ~ 25877640 (+)
LOC120563139 LOC106907557,LOC103141567,LOC106948827,LOC107084787,LOC103477829,LOC102227399,LOC102310127,LOC102211983 coding downstream 520470 26030763 ~ 26044380 (+)
themis2 NA coding downstream 540360 26050653 ~ 26058431 (+)
smpdl3b smpdl3b coding downstream 554730 26065023 ~ 26068354 (+)
LOC120561982 maneal,LOC102777073 coding downstream 578660 26088953 ~ 26104684 (+)
G75977 NA non-coding upstream 159235 25346263 ~ 25347216 (+)
LOC120561670 NA non-coding upstream 170493 25335016 ~ 25335958 (+)
G75943 NA non-coding upstream 361647 25144579 ~ 25144804 (+)
G75942 NA non-coding upstream 362177 25144058 ~ 25144274 (+)
G75941 NA non-coding upstream 390694 25115556 ~ 25115757 (+)
G76055 NA non-coding downstream 32106 25542399 ~ 25596454 (+)
G76083 rps19,LOC106942871,LOC103477840,LOC102304814,LOC102192408 non-coding downstream 95857 25606150 ~ 25617478 (+)
G76089 NA non-coding downstream 114137 25624430 ~ 25701085 (+)
G76109 NA non-coding downstream 292219 25802512 ~ 25804190 (+)
G76113 LOC101165095,LOC108235336 non-coding downstream 311320 25821613 ~ 25822239 (+)
apoc2 NA other upstream 2399 25502600 ~ 25504052 (+)
apoc1 NA other upstream 13189 25491784 ~ 25493262 (+)
LOC120561674 LOC104943405,LOC103477911,LOC108235491,LOC108235490,LOC102233864,LOC107379681 other upstream 125653 25374207 ~ 25380798 (+)
LOC120561858 NA other upstream 510142 24915254 ~ 24996309 (+)
grik5 grik5 other upstream 621078 24806289 ~ 24885373 (+)
taf12 taf12 other downstream 282525 25792818 ~ 25795519 (+)
G76192 NA other downstream 629608 26139901 ~ 26142627 (+)
LOC120562432 LOC101064911,LOC106524684,LOC104919574,LOC106098620,LOC102206486,LOC108235477,LOC102229209,LOC108166993 other downstream 1135091 26645384 ~ 26647615 (+)
G76315 NA other downstream 1297825 26808118 ~ 26815391 (+)
G76355 snip1 other downstream 1373157 26883450 ~ 26886546 (+)

Expression


Co-expression Network