ctsk (ctsk,LOC107086845,LOC106920373,LOC103156711,LOC106949137,LOC103477640)


Basic Information

Item Value
gene id ctsk
gene name ctsk,LOC107086845,LOC106920373,LOC103156711,LOC106949137,LOC103477640
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 33134110 ~ 33153043 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806417.1
CAAGGAAACTCCTCCCCAGACCGCTGGAGCTCCCAGCGTATGCTACTTCCTCAAACTCCAACCCATAAAAACTCACACCCTGACTTACTTTGACAGTAGAAGACGGCGCTGCACTCGGGGAACTTCACCAAACTTTTTGACTTTTGGACTTAAGGatgttgcagtgtgtgtgcgtgttgctGCTGGCGGCCTCAGCTCTGAGCCACCTGGATCAAGCCTCTCTGGACAACCAGTGGGAAGAGTGGAAGACCACACATAGCAGAGAATACAATGGCCTGGATGAAGAGGGGATTCGCAGGGCCATCTGGGAAAAGAACATGCTTATGATTGAAGCCCACAACCAGGAGGCAGCACTGGGCATGCACTCCTTCGAGATGGGGATGAACCACCTGGGCGACATGACGTCAGAGGAAGTGTCCGAGAAGATGACGGGCCTGCTCGTCCCGATGAACAGCGAGCGCAGCTTCACCATGGCTCTGGACGACCAGGTGTCCAAGCTTCCCAAATCTGTTGACTACCGCAAGAAGGGCATGGTGACTGCAGTGAAGAACCAGGGTGCCTGTGGCTCCTGCTGGGCCTTCAGTTCGGCCGGGGCCCTCGAGGGCCAGTTGGCCAAAGCGACAGGGAAACTGGTGGACCTCAGTCCCCAGAACCTGGTGGACTGCGTCAAAGAGAACGACGGCTGTGGAGGAGGATACATGACCAACGCCTTCCGCTACGTGCAGGAAAACGGAGGCATCGACTCTGAGGCGGCCTACCCATACATCGGAGAGGACGAGCCGTGCCGCTACAATTCATCAGGCATGGCAGCCCAGTGCAAAGACTACAAGGAGATCCCCTTGGGTGACGAGCGAGCGCTGGCTGTCGCGCTGTTTAAAGTGGGTCCAGTCTCTGTGGGCATCGACGCCACGCTGAGCAGCTTCCAGTTCTACCAGAGAGGTGTCTACTACGACCCCAACTGTAACAAAGACGATATCAATCACGCTGTGCTGGCAGTGGGCTATGGAGTGAACACCAAGGGGAAGAAATTCTGGATCGTCAAGAACAGCTGGGGCGAGACCTGGGGCAAGAAGGGCTACATCATGATGGCACGTAACCGAGGCAACGCCTGCGGCATCGCCAACCTCGCCAGCTACCCTGTCATGTGAAGAGGACAAGGGGGGCTTTGCTTAGACTactacacacaaaaatacacgaCCATGTGCACAGAGTTCATTCCAACACGTCAGCAACCACTACAAGCAATAACAGAAGATTGAAATTTGTTTATGAAGGTTTTCCAAATTCAAACTGGGCTCTTTTGGAATATATTTATCTTGGTGATAAAAAGGGATTCTGGGATTCCAATGTCCTTAAAAATGTTTCATGAAGACGTTTGGTTATCTTGAGTTATTTGAAGCACTTTGAACCCCctaagactttttatttttatctttaacCAGCAGACCTCCACTGTGGTCTGCTCCATAAGCACATTTAGTACCTCCAGGGCTTGGTGTTAGTAACCCTGAGCCAGAACACACATTGGTTTGTGCCAAAGTGCTAAGTTAAATCTACAAACCCACCAGGCACAACCAACCTTTCACACAAGGCTGGTAGTCGGTGACAGTTTAAGTCCCTTTAGTTTTTATTACAGTTTGTGTGAGAACTGATAGAGTTTTAATTCATTGTGACTGGAAACATTGCTGGGCAATGGGAGCTCCTCCTTTCCTGTTGATGCAGAGTCAGTTcttttaaaaatagtttttctCTTGATCATGtcaacttttatttttgttgttgttctgttcAGCACTTTTCTGATGATCAAACTGTAAACTGATGTTTTCTATGAATAAAGGTTTCATTTTGAAA

Function

symbol description
ctsk Predicted to enable cysteine-type endopeptidase activity. Acts upstream of or within bone development; cartilage development; and response to mechanical stimulus. Predicted to be located in apical plasma membrane and extracellular region. Predicted to be active in extracellular space and lysosome. Is expressed in several structures, including cardiovascular system; head; lateral line system; mesoderm; and pectoral fin. Human ortholog(s) of this gene implicated in pycnodysostosis. Orthologous to human CTSK (cathepsin K).

NR:

description
cathepsin K

GO: NA

KEGG:

id description
K01371 CTSK; cathepsin K

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806417.1 True 1854 mRNA 0.50 8 33134110 33153043

Neighbor

gene id symbol gene type direction distance location
LOC120562448 NA coding downstream 3551 33115217 ~ 33130559 (-)
mcl1b NA coding downstream 113035 33018705 ~ 33021075 (-)
tmod4 tmod4,LOC102789303 coding downstream 187882 32915320 ~ 32946228 (-)
lysmd1 NA coding downstream 228637 32902016 ~ 32905473 (-)
ptpn23a ptpn23 coding downstream 730688 32376916 ~ 32403422 (-)
LOC120563172 NA coding upstream 143207 33296250 ~ 33299540 (-)
atg5 atg5,LOC102785391 coding upstream 362651 33515694 ~ 33556965 (-)
LOC120561933 NA coding upstream 414815 33567858 ~ 33581386 (-)
eaf1 eaf1 coding upstream 726730 33879773 ~ 33893809 (-)
capn7 capn7 coding upstream 895395 34048438 ~ 34081401 (-)
G77959 NA non-coding downstream 1577 33132243 ~ 33132533 (-)
G77949 NA non-coding downstream 32573 33099816 ~ 33101537 (-)
G77910 NA non-coding downstream 239320 32867146 ~ 32894790 (-)
LOC120562114 NA non-coding downstream 315564 32784245 ~ 32818546 (-)
G77850 NA non-coding downstream 445479 32688412 ~ 32688631 (-)
G77984 s100a1,LOC105028680,LOC106605324,LOC107587912,LOC107689908,LOC107663298,LOC107598020,LOC107717776 non-coding upstream 131870 33284913 ~ 33286592 (-)
G77994 NA non-coding upstream 306979 33460022 ~ 33460244 (-)
G78064 LOC103362578,LOC107379244 non-coding upstream 332265 33485308 ~ 33486895 (-)
G78061 NA non-coding upstream 412752 33565795 ~ 33588250 (-)
G78084 NA non-coding upstream 567638 33720681 ~ 33720916 (-)
ensab ensa,LOC103369031,LOC100695493,LOC101487776,LOC102787866,LOC102291346,LOC102199757,LOC108243249 other downstream 101215 33022098 ~ 33032895 (-)
sema6e sema6c,LOC103360390,LOC104932808,LOC100704625 other downstream 489141 32480644 ~ 32644969 (-)
LOC120561540 LOC104957162,LOC106526711,LOC102237165 other downstream 699243 32425365 ~ 32434867 (-)
tbx20 tbx20 other downstream 1143745 31976484 ~ 31990365 (-)
LOC120562592 dgkb,LOC102796570 other downstream 1507229 31612436 ~ 31626881 (-)
LOC120561932 NA other upstream 437478 33590521 ~ 33602948 (-)
LOC120561752 NA other upstream 942208 34095251 ~ 34097590 (-)
G78245 NA other upstream 942600 34095643 ~ 34146296 (-)
LOC120561744 NA other upstream 976495 34129538 ~ 34132432 (-)
LOC120561747 NA other upstream 1108483 34261526 ~ 34273652 (-)

Expression


Co-expression Network