XLOC_004640 (neurl2)


Basic Information

Item Value
gene id XLOC_004640
gene name neurl2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 18524953 ~ 18527221 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009184
AGTACTAGAAACTTCTCCAAGCCACAAGGGTGCATTGGtggcaaaacaaaacttttaaaaaggaTTCCACCAAAATGGAAGACTCCTACccctgaaaaaaaatgtaaatattgtgctTGAAGAGACTTTGTATTCTTgcttcaaaacaaaaacattctcGTTTTGATTAATTTGAAGACACTTTCAAAAATGACAGCAGTTTTGGATCAGTTTATGGAATTTCACTCAGTTCATGGGACCAACGTTCAACTGGATCCTTCGAGGACTCGGGCCACCAGAGTAGAAAGTTTTGCAAATGGCGTCTGCTTCAGTAAAGACCCTTTAAGCCCAGGGGAGATTTTCCTAGTGGAGATTGAAGAGAAAGAACTAGGCTGGTGTGGTCATTTGAGGATCGGACTGACTGCCCATGACCCTCGAACGCTGGACACTGTGCCAGAATACTCTCTGCCTGATCTGGTAGAAAAGGGAGACAGCTGGGTGTTCGCAATCACAAGAAATCACAATAAAGTCAATGAGGATGAAGGAGCAGAAGTAGAACAGCCAAATGAGGGTAATGACACCAGCAACAAACCTAAAACCTTTTTCACAGACACTCATTTGTATATTGAAAACATGGGAATACCTAGAGATAAACTAGTGGGACGCAGTCGTCCGGGGAGGTTCAGTCACATTCTGGATGATCTGTACAAAACCAACGCTCTACCACCAACTGCCCGCCGTAGTCGGATAGGGGTTGTCTATGTACCAAAGGGAGAAGGTTGTGCCAACATGCACATTGTCATCAACGGTGAAGACATGGGAGCCTCTGCTAAAAGGATTCCCACTAATAAACCATTATATGCAGTTGTGGATGTATTTGCAGCTACCAAATGTGTTCGAATTGTTCAGGTGGAATATGGCTTTGCCTCATTGCAGACACTCTGCCGAAAGACTATCCAGAAACACATCGTTCACAGGATGGCTTTGGATTGGTTGGAACTTCCGGAGTTACTAAAACATTATTGCAAATATGAGTGAGCAAAACATATTGGCCCTTGTGGATAATTATGGacactttttttttgcttacatGTTGGCTGTGTTAATGCAAGTACTGTAGCTTAAAGGTTGGTAAAAGGGGGATTATTTTATTGAAGTTGAATAGTTTACCCTGATTGGCGTTCAGAAatctattttacaataaataaataaataaatagttatactTGGGACCTTCTGGAGAAAAATATCCAAACGTTATTAAGAAGgcttttatttaattcaataaaaaaatgtgtagtatttaagcaaattttttaaaGTTTGGTTTTGCTTCTTAAAACTCTGCTTTTGAGGATAGCAATCCAAATATATGTAATTATGCAATTAGAATTATCTGGTTGTGTTGGTACAAATTTCAGAGTTTGTTTTGTAAACTGAAAAatttgtgtgtgttgtatgtgtttttttttttttttcaatgtgatACTAAAAGCAGCAAAATGAATGTTTCTGATATTGACATACGTTTTcattatttaaacaaactgttaTGACTTTCAGGATAATTTAGGATAAAGATTAATGTCATCAATATTAATGCCTTTATGGAAGTTATCATGGCTCTTTCTGGTCATTTTGGACAGATTTTTTGTTCTCTAcaatttcagaaataaaggtacgcaaacTGTCACTGGgggggtaccttttcaaaaggtacacatttgtacttaaagtggaggcgtggcacccaaccccatccctaaccccaaccgtcattgggtgatgagcaaatcatactaaattgtacaaattcatactaattagccactaaatcaaaaagttatgaattgctgtaaAATTGtgttggtacctcaaaagtatatattagtaccaaagattttaaaaggaacacttttgtactttttaggtactaatacattatgtacccttgaggtattaatatggaccttagGTACAAAGttgcaccttttgaaaaggtaccaccagtAACAGCTGCCATACCTTTGTTTCTGAGATTGTAGACATGTGTAACTTTACATTGATGCTTAAAAGTTAAGCATCCGTTTAGATGGTAGCAAATACTTGTTTAACAGGAGCCACTGAAGTTGCTTTATTTGTTCTTCTTCAACTAAAAAGTAATCATCACAACagtataataaatattctttaaattCAGGGAACA

Function

symbol description
neurl2 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in cytoplasm. Orthologous to human NEURL2 (neuralized E3 ubiquitin protein ligase 2).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-31 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in cytoplasm. Orthologous to human NEURL2 (neuralized E3 ubiquitin protein ligase 2).

Ensembl:

ensembl_id ENSDARG00000062446

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009184 True 2185 mRNA 0.37 2 18524953 18527221

Neighbor

gene id symbol gene type direction distance location
XLOC_004639 rnf151 coding upstream 59978 18458502 ~ 18464975 (+)
XLOC_004638 noxo1b coding upstream 70531 18445604 ~ 18454422 (+)
XLOC_004637 FOXL3 coding upstream 162531 18358082 ~ 18362422 (+)
XLOC_004636 fam20cb coding upstream 181300 18234557 ~ 18343653 (+)
XLOC_004635 NA coding upstream 296949 18209871 ~ 18228004 (+)
XLOC_004641 msrb1b coding downstream 2007 18529228 ~ 18571563 (+)
XLOC_004642 CT009714.1 coding downstream 29708 18556929 ~ 18592444 (+)
XLOC_004643 grid2ipb coding downstream 51376 18578597 ~ 18656238 (+)
XLOC_004644 AL772266.2 coding downstream 71629 18598850 ~ 18598964 (+)
XLOC_004645 si:ch211-147h1.4 coding downstream 135933 18663154 ~ 18666282 (+)
XLOC_004634 BX005075.1 non-coding upstream 399179 18125658 ~ 18125774 (+)
XLOC_004625 NA non-coding upstream 1097573 17424431 ~ 17427380 (+)
XLOC_004624 AL731788.1 non-coding upstream 1179286 17345550 ~ 17345667 (+)
XLOC_004618 dre-mir-107a non-coding upstream 1564172 16960693 ~ 16960781 (+)
XLOC_004648 NA non-coding downstream 334057 18861278 ~ 18867975 (+)
XLOC_004660 NA non-coding downstream 740538 19267759 ~ 19271156 (+)
XLOC_004667 BX649366.2 non-coding downstream 860922 19388143 ~ 19388273 (+)
XLOC_004670 NA non-coding downstream 931588 19458809 ~ 19459285 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_01531962_01532897 NEURL2 coding CI01000063 null 1531293 ~ 1533009 (+)