LOC120562623


Basic Information

Item Value
gene id LOC120562623
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 17095056 ~ 17107677 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806429.1
CACAGCTATGGAGCCAGTCCAAACAACTTTTCCAGAGGAACTGCACACCACAACGCGTCCAGTCGTCCATCAAAGTGCTGAGATTTACCAAAGCAGCCGAACACGTGACGAGAAATTAGCTTAACGCCTTAATTTAGCTTTTGAGTGTATAATTCAGTTCTTTTCTTACTATATAGTTATTTCTCCTTACAACTGTCGTCTCTTTTTGGAAGTTACGATGAAGAGTCTGCGGTTGTTGTTCCTCGTCGGGCTGGCGACTGGGTTTATCAGTGAAAAACTCTTTGTCTCCTCCTTTTCCACGACAGATGACATATACCTAGAGGGCCGAACGTCAGGTGACCTCCCCATAGATGATGAAGATGGTGATGACGGCGGATCAGGCTCTGGATCCGGAGCCTTTGATGAAGAGGTATTCAGGAGGTTCACTAACTTCTCTCAGACCACAGTCTCCAAAGAAACGGTTCCAACTCAACCACCGCCAACAGCAGACTCTCCTCACAACCCATCAACCACAGCAGCAACCAAAGTGaaggacacagagacaacaccATTCATATTACCTAATGGGGACAGCAGTGATGAGGAGGTGACAGCTGATTGGGTCACAGAGAGCTCCACCAGCAAGCCTCCCAGTGAAActactgcaaccaaattcggcaTAGACATCACTGTAATCAATGATACCGTCGAGGATAACAGTCTGGATAGGTGGGATGTCTCAACACCCAAAAACCGCCAAGACGAAGTCCTGATTGCACATCACGAAAATGATCTTAAGGCCACCAACGGCCGAAGCAGAATATATGACATGGACTCTCCGGCAGAGGTGACCTCTGAGAACATGTGGGAGAGGACGGAAGTGCTGGCAGCGGTGATAGCTTGCGGAGTGATTGGATTCCTCTGTGctgttttcctcctcctcctaatCGCCTACCGTATGAAGAAGAAGGACGAAGGTAGCTACAACCTGGGAGACACCAAAGATTCCACAACAGCCTATCAGAAAGCGCCTACCAAGGAGTTCTACGCCTGAACTGACCAATAGGGACTTTAAATGGAGTGTGTCTCCTCCCAATCAGGACTAAGAATGGATCTATAAACAACTGAAGATGATCCCTCTTGATGAAGTTTGAAGACAAGCACCTCTGTTCTTCTTCAGTGCTCTCgccattattatttttctcatcTTTGATGCTATCCTTTCACATCTCGTTGGACTTGGTTCTGCATTACAGAGAAATTGTCCCATTTAGCAGAGCTACAGCCTGAAATGTCCCAGCTCAGCTTAACAACATTGAGGAAGTTCACAGAAACAAATTAATTGCCTTAACACATTTTGAATGCTGTTAATTGAAATGGTACCACATATGGGATTAGTATTACAAAGGGCCTTCACAAATGTAAACCCTTTTCCTGTTATTTGAGGTCgaatttgctcttttttttacatttttcattgttGCATTTCATTTTCTGTACGCTTTCTTTGCTGAATCgatgatttgtttttgttgttatgagGAATGAATATGTTTTTTCATATGCTGTCCAGTATTTGAATGAGAGATGATGTTTCTCTGCAggtacatatttttgttgctttcttaCAGATTTCTGACACTTGTAGAACTGACCAAATATAAATGTgctttaattgtattttgaaaaattatttttactagCCTTTTCAATGTGTTTTGATGTTTAGAGATTATATTTCCGTAAGCCATTTTTTAAGAGATTTCAGCTATTGTATTCATACAGTGGTAGCCGTATGTTGGCCCTCAACTTTGCATCCAGCATTAGTCATATTTTAAGGACTATTTTATTTGATGACTGAGTACAGCAAGCACGTGTAACAGGATTCCTCAGGTAAAGCCAAGGCTAATGACTATAATTCAGAAACCGTAAAAGTTACCAACGATTTCTgccaaaacacaacacattccTTTCTGACTGTCAAATGCATACAGCTACCATAGCAGGTTTGGACTTAAAGGGACAGTGATAATGTAACTGACAGGATTATCAAAAATCTGTAATATATTCATGTCTTacaaattattttcaaataGTTACAATGTTAGGTAGTGTAGGCATGTCAGATTTTGCCTCAACCAGCCAACCAAAGAGAGCATGGGACCTTCTAGAGAATTTTTAGAGATATTCCCTTTTCACAGCACATCATTCTTACTTGTATAGACcctgttaaacaaattatttaaGTGAAAATATCAGGGATTTGCCCTATGTATAGTGTCTGATGAATTTTAAGCATCTACCTACTGCTTATTATGagtcaaaaaactaaacttgATGATCAGTGGTCGATGCATACAGAGAGGTGGGGCTAAGTGGTTAAACTATGAGTAGACTTGCCCTGATAGCCACACATTCTAATTGAAattatattgttttgtatttctaTGGCTTCGACTTTGTTGACATGAGTTTAATGTCGTATAACAGATGTTAAATTGGTATAGGCATTCTTATAGGATTGTAATAGCTATTTTTGTTTGTTGCCCCTGTCTGTTGCAAAATTTGTAGCAGCAGTTTTTGTGCCTATTAACTGTTTGAttcccttttattttttgtccTTTGGTCAAGTCTACTTAATAGTGTTTACATGATATAAATACATTTGCCATAATTTAAAATACGTATTATTTTGAAGCAATTCTAGAATAACAGAATGCAAGCTACCTATTCACCGTGGCTGGAATAAACAAGACAATTTTATCACTACTAACCTACTGTGACTTACTGTTAACGTAAAATTTGTTGAGCACTTGAATCCTCCGTGCCTCACAaaatacattgtatacattCATTTACAGTTGCTTTGACCTTTTGAGCTGTACAGAACCTCAACTGGAATGTTTCTGTTCCAGTGTGATCGAGGAAAAATGGACATTTCTGTTCTCCATACCAAcagaaaaaacataataaaccCTACTCCTAGAGGGTTAGGACAACAGGTTAGCACTTGCCAGCAATCCAACAGGTGAAGGCACACAATAATCGTTATCTTCTAGAATCTTTGTaagtttatacagtatgttgatgATACtataatttaaatgtattaatttatacTTGCTTAGACTATAATCCAAGTTATTATGTCAGTGATTTATTGGGATTGTACAGTATTTAGTCATGATCGAAGCCTCTTTGTGCCTACtgctcagtttttgtttttaaatatatgttttcCGTGTATTTGATGAGACTCTGTTcaattcattttcattatcaGTTGTCTAGCTTTTTTAAAATACTTGTTTTCATATAaagacatttaataaatgaataaagtaGAATAAGTTCTTGTAAATATA

Function

GO: NA

KEGG:

id description
K16336 SDC2, CD362; syndecan 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806429.1 True 3344 mRNA 0.39 5 17095056 17107677

Neighbor

gene id symbol gene type direction distance location
mrs2 mrs2,LOC105917271 coding upstream 1180 17079407 ~ 17093876 (+)
LOC120561713 ptk2 coding upstream 29979 16995309 ~ 17065077 (+)
LOC120561714 NA coding upstream 104459 16984611 ~ 16990597 (+)
sntb1 sntb1 coding upstream 197091 16858023 ~ 16897965 (+)
LOC120562165 nov coding upstream 244824 16845953 ~ 16850232 (+)
LOC120562784 cpq coding downstream 2199 17109876 ~ 17129613 (+)
mrpl13 mrpl13 coding downstream 42148 17149825 ~ 17162698 (+)
LOC120561781 tmem158,LOC102794155 coding downstream 327497 17435174 ~ 17436804 (+)
cdcp1a NA coding downstream 331416 17439093 ~ 17445194 (+)
wdtc1 wdtc1,LOC102795681 coding downstream 367891 17475568 ~ 17484853 (+)
G72862 NA non-coding upstream 29145 17065589 ~ 17065911 (+)
G72879 NA non-coding upstream 103067 16991716 ~ 16991989 (+)
G72859 NA non-coding upstream 132216 16959788 ~ 16962840 (+)
G72852 NA non-coding upstream 364012 16730837 ~ 16731044 (+)
G72801 NA non-coding upstream 600481 16494237 ~ 16494575 (+)
trnar-acg_16 NA non-coding downstream 261026 17368703 ~ 17368775 (+)
G73019 NA non-coding downstream 284591 17392268 ~ 17403627 (+)
G73027 NA non-coding downstream 320151 17427828 ~ 17463027 (+)
LOC120562054 NA non-coding downstream 392912 17500589 ~ 17504921 (+)
G73186 NA non-coding downstream 816273 17923950 ~ 17926628 (+)
G72750 LOC104952694,LOC106925895 other upstream 1022855 16018359 ~ 16072201 (+)
irx4a LOC103360443,LOC102233360,LOC103478376,LOC108232226,LOC101474805,LOC102784018,LOC102295185,LOC102202030,LOC104961814,LOC103145173 other upstream 1534764 15553464 ~ 15560292 (+)
LOC120561718 LOC107101581 other upstream 2462335 14626478 ~ 14632721 (+)
G72506 NA other upstream 2668876 14425794 ~ 14426180 (+)
LOC120562174 rbms3,LOC101066789,LOC103370884 other upstream 2724965 14175817 ~ 14370091 (+)
G73031 LOC103366415 other downstream 341908 17449585 ~ 17452568 (+)
ubxn11 NA other downstream 348966 17456643 ~ 17461118 (+)
G73123 phactr4 other downstream 537836 17645513 ~ 17647186 (+)
paqr7b LOC107588505,LOC104938075,LOC103388542 other downstream 643253 17750930 ~ 17779130 (+)
kcnn4 kcnn4,LOC104953880,LOC100704922 other downstream 1291379 18399056 ~ 18420721 (+)

Expression


Co-expression Network