cdc42ep5 (cdc42ep5)


Basic Information

Item Value
gene id cdc42ep5
gene name cdc42ep5
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23004372 ~ 23007320 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806443.1
CATGCCCATCcctttggaaaaaaagaaaattcacaCAGGCAAACGACGGCGAGAAAAAGAGCGAGGGAAAAGTCGGGAGGGAAGCAAAAGTCAAAAAGCCAGATGAAAAAGTTGGATACTGCGGAGCGAGTCAACCAAAGACCAGAATATTCTCTTTAAATCATGCCGCTGCATAAATCTACCCGGGCACCTCGCCTGGACCCTACCATGATCTCAGCCCCACTGGGCGACTTTCGCCACACCATGCACATTGGGAGGGGAGGCGATGCCTTTGGGGACACCTCCTTCCTGTCCACTCTTGGGCCGAGCCCAGCCAGCCCTGACCCTGAGAGTCCAGGGATGATGCCAGCTGCTGAACCTCAGGTGGCAGTCAACCACAGTGATCTTTATTCAGATGCTCCAGGAAGCCCACAGAACAATGAGCTTCAGCACTCTGAGTCAGTGTCTTCATTCGACCTGGACCTGGATCTAGGCCCGTCTATGCTGGGGGATGTACTAGGGGTGATGGACGGTTTGGGGCTTGACTCCAATGAGGAGGATGTGTTCAATCCCAAAAGTGGCACATCCTTGGTGGAGACAAAGCAGGGAAAAGGGGCCGTGGAGATGACTGTGAACAAACAGAACGAGCTGAATGGAAAGAACTTGGGTGGGTTGGATGGAAACCAGGTGGGAGACAGCAGGATAACAGATGGGAATGGGATCAAGCCAAAGGGGTTAAGACCAAAAGTGCGATTCAGCGATAAACGAGAAGAGATAATTCGCCAAGCATCTGAAGAGGAAGAGGGTCAAGGGTTCAACTTCCAGGATGAGGATCAGCTGGGGTGTCATAGTCCAACAAGGGGTAAGATTGAGAGCGTAGTAGGTGGAGGTGAAACCGAGTTCACCAATCACAAAGTAGATTTGCCACCTAGTCCGGACTCGTCACATAGCTCAGAGTATGAAGGAGTCACCCTATTGGACAGGAGGAGGGTCGACAGCTGCCACTCAGAGACTGattcagaagaagaggaggaaggacgAGGCTACACATTTGAAGATGAGTTTGATGATGAAATTGGTCTATAGGGGATAGGTACAGTTTCCCCTTGAAAACAGATCATTGCTGTCAAGTAAatcagatatactgtatttcttaAACTCATCATCTCTGTATCATTTGAATGGGAGGCTTAAACAGAATGcaaactggatttttttttttttaaatgtacagttCGACGACGTTGCTCAACTGGAAAagacattttatgttttatctGTAAGGGTAGCAGATTTGTAATAGACTGTCATTTTCCTCAGCGAAATCAGTATGTCATTGGGGTTCTTACAGTGAAAGGTTTGTAGCACTTTGATTTATTTCATTGACCTGGAAGCTTTGCTATGAAACAGACTAAATTAATGATGCTTGCGTTCATTTCTTATATTTACCATCTGAAGCGCACACAACAGGTGTTACAGCTTTATGTTATAGTGCCTTAAGGAGAGCTGTATGCTTACACTATTGTACCATGTGCTATATCAATGTCTTAATTATTTCTCATATTGCATGTTTATTACAATCTCATTAGAATGTCTTCTCTTGATGTTTAATGCATTTGACGAGCTTTACAAATGATTCTTAAGAGACTTTGTCAGAAAATAAAGTCATCCTGTGTTTAATTATTTACTGTGAATTTGTCACATTCCAAATCTGACAGTGTTGAGTTTCTCTGGTTCAGATCTGTTTAACAATCCGTTTTCTTAATGCAGTTATTTAGCATGTTTTCAACTTACCAAAGCTTTTCTTTGGGCTGTGGGGCTGGACTAATACTGCAATGCTAAGACAATCGTGGGTTTCAAAAGGTCAACTGTAAATCAGgaccagctgttttttttttttttttgcttgtatAATGCTTGTATTTTGACAAAATATTTCAGAATGCTATAAAAGGGAGAGGCCATTACCCTCATGAAAATGCTGGTTTAAACACATTTGTTATCCTGTGGTTTGATAAGGAttacagtggaaaaaaaaataaaacaattgggattttgaaatattca

Function

symbol description
cdc42ep5 Predicted to be involved in Rho protein signal transduction; positive regulation of cellular component biogenesis; and regulation of cell shape. Predicted to be located in endomembrane system. Predicted to be active in cytoplasm; cytoskeleton; and plasma membrane. Is expressed in artery; cardiovascular system; notochord; pharyngeal arch; and polster. Orthologous to human CDC42EP5 (CDC42 effector protein 5).

NR:

description
uncharacterized protein LOC110536887

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806443.1 True 2046 mRNA 0.43 2 23004372 23007320

Neighbor

gene id symbol gene type direction distance location
rbfox1l LOC104929735,LOC100696733,LOC102314559 coding upstream 21593 22968438 ~ 22982779 (+)
tfpt tfpt,LOC102781997 coding upstream 105503 22893099 ~ 22898869 (+)
zgc:158689 LOC104960461,LOC101078804 coding upstream 116494 22878031 ~ 22887878 (+)
cyth2 cyth2,LOC103136639,LOC106520542,LOC107088802 coding upstream 139529 22852358 ~ 22864843 (+)
sphk2 LOC104960464,LOC103388269,LOC106096428 coding upstream 154845 22838405 ~ 22849527 (+)
leng9 NA coding downstream 21398 23028718 ~ 23036069 (+)
ttyh1 ttyh1,LOC102785918 coding downstream 29579 23036899 ~ 23058964 (+)
ube2s ube2s coding downstream 56482 23063802 ~ 23070370 (+)
si:dkeyp-69b9.6 znf628,LOC100697888,LOC102784474,LOC103360149 coding downstream 79855 23087175 ~ 23096445 (+)
dbpb dbp,LOC104960436,LOC103360148,LOC106963973 coding downstream 91969 23099289 ~ 23108067 (+)
G75069 NA non-coding upstream 9666 22994420 ~ 22994706 (+)
G75065 NA non-coding upstream 17050 22982892 ~ 22987322 (+)
G75045 NA non-coding upstream 79217 22924592 ~ 22925155 (+)
G75042 NA non-coding upstream 84269 22918752 ~ 22920103 (+)
G74769 NA non-coding upstream 748894 22255271 ~ 22255478 (+)
G75077 LOC104960445 non-coding downstream 9487 23016807 ~ 23018595 (+)
G75155 NA non-coding downstream 136622 23143942 ~ 23144165 (+)
G75192 NA non-coding downstream 320922 23328242 ~ 23328629 (+)
LOC120561704 NA non-coding downstream 324520 23331840 ~ 23332756 (+)
G75196 u2af2 non-coding downstream 332526 23339846 ~ 23342677 (+)
cnot3a cnot3 other upstream 92852 22900089 ~ 22911520 (+)
myh14 NA other upstream 184319 22785578 ~ 22820053 (+)
LOC120562539 LOC102295960,LOC100711672,LOC102209551,LOC101487210,LOC102786116 other upstream 298956 22689070 ~ 22705416 (+)
LOC120562537 NA other upstream 336487 22660479 ~ 22667885 (+)
arnt NA other upstream 378419 22610018 ~ 22625953 (+)
LOC120562293 LOC103360151,LOC102310947,LOC102785150 other downstream 63267 23070587 ~ 23083147 (+)
LOC120562612 LOC103367657,LOC105025867,LOC103136704 other downstream 483805 23491125 ~ 23494034 (+)
trpv6 LOC104929027,LOC104960406,LOC103388006,LOC107082237 other downstream 553528 23560848 ~ 23571243 (+)
casp2 casp2,LOC102795506,LOC103369458 other downstream 634235 23641555 ~ 23651496 (+)
LOC120563204 NA other downstream 760913 23768233 ~ 23813408 (+)

Expression


Co-expression Network