bbs9 (bbs9,LOC102784155)


Basic Information

Item Value
gene id bbs9
gene name bbs9,LOC102784155
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 33632641 ~ 33822829 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806472.1
TGCGCACAACAGCCCGGCTTCCTCGTTAAGCGTCAGTGCCATGACAACAGGACGATGGCTGCAAGCAAGAGGGTGAGAAATGTGATTTCTGTGTGAACCAAGAGTACCAAAACCATCGGCTTTTACGGACTGGCTCGTGTACGTGAAGAGGAAGCATGTCTCTCTTCAAGGCCCGTGATTGGTGGTCAGCAACGCTTGGCGAGGGGGAGGAGTTTGACCAGGGATGCCTCTGTGTCGGCGACGTGGACAACAGTGGCACCGAACATGACAAGGTGGTGGTGGGCAGCTACATGGGGATGCTGAGGATATTCTCCCCACATGCCAATAAGACCAGCGAGGGAGCTCTGGTCGAGGCCCTGCTTCTCGAAGTCCAGCTCCAAAATGCCATCATCCAGGTGGAAGTGGGCAAGTTTGTGTCGTGTTCAGATCTTCTTCATCTGGCTGTTCTTCACCCCAGGAAGTTGTCAGTCTTCTCTGTTTCAggCACTGCAGGGAACGTGGAGCACGGTGACCAGTACCAGCTAAAGTTGGTTTATGAACACAATCTGCAGAGAACAGCCTGCAACATGACCTACGGCACCTTCGGAGGGGTCACAGGTCACCACTCCCTGTGTATCCAGTCTATGGACGGGATGCTGATGTTCTTTGAGCAGGACAGCTACACTTTTGGCAGGTTCCTGCCTGGTTTCCTGCTTCCCGGCCCATTGGTCTACAACTCCAGAACAGACAGCTTCCTCACCGTTTCCTCGGCACGCCAGCTGGAGAGCTACAAGTATGAGACTCTGGCAGTGGCTACAGAGGCAGAGAGTCGACAGGATCCTGATCTGCCCCTCAAGACTGGAGGCAAAAGGCTGACGCCTGACTGGACGTTTGTCCTGGGAGAACAGGCCCTGGACCTCTGTGTGCCCTCCCTCTCCCACTACTCCTCCTTCATCTTCATTCTGGGTGAGAGGAACCTCTACTGTCTCCGGGACAGCGGCCAGATCCGCTTCATGAAGAAGCTGGAGTTCAACCCCAGCTCCTTTCTGCCCTACGCCTCAGTGACAGATGGCACGACCAAcctgttgctaggtaaccataccaACATGCTGCTGGTTTACCAGGATGTGACTCTAAAGTGGGCGGCGCAGCTTCCCTTTGTGCCCGTGGCCATTCGCGTCGCCAACTTCCCGGAGATGAAAGGAGTCGTGATCAGCCTGAGCTCTGATGGCCACCTCCTGTGCTCCTACATGGGTACGGACCCCTCCTTCTTCTCCACGCCCAAGGTGGACGCCAGGGAGGCCGACTACGAGCAGGTGGATGCTGAGATGAAGACGCTGCAGAAGTTCATCAGAGAGGCCACCAGGACTCAGGACATCCTGGCTAAAACCGACGCTGAGGAGGACCTCATTGTTACAGTTGCTGTGTCCTCCAGCATGGACAGCCCACCGCAAGCTCTGATCCAAGATATCGACGGTCTGACCGTCCCTTCAGTAACAGTCCAGTTAAAGGTGAAGGCCCGTTGTGTTGTACAGTCCTCTAAGATGACCGTCGGCGTTCAGCCTCCTCTGGCCGTCACTCAggaaaaatttgttttggaacCCATGGgtgCTGGTTCCTCAACAGTTGTGGCATTTTCAGCTTTCCTCAACGGCCGCTACCCCACTGCTGACCTGACTGGAGACATCACTGTGTCCTTCAGCTTACCGACAGaGCTTAATCCCAAAGgaGTTCCCAGGGTTCTCCAGTCCAAGTTCAGTCTTCCTTTGGCATTGGTGTGCGTTCCTACCTCTCCAGCCAAAACCACCAAGTTTAAGATTACTGTGGACACCAACCAGCCACCAGTCAACCTCAACTCCATTTTCCCAGAGTTTTCAGCTAAATCAGAAGATAAGGATGGGAATAGTTTGGCTTTCCAGTTCCTGTCAGGAGCCAAGGTTACCGTGGTGGCCTCCAAGACCTCCCAGCGTTACCGTATTCAGAGCGACTGTTTTGAGGACATGTGGttggtggtgaaggagttggtcCAGAGATTCGACAAGCATTTCTCCAAACTGGGAGTCAAAGACTTCAAGAAAAGCTTCAGTGGGCCGCTCCCTATGCAGGAGTACTTCCTGTCTGTAGACCACCACTTCCAGctgcGTGTCAGTGCTCAGCAGTACCAGGATCTGCTGTCCGAGCGGGCTGTCCAATTCAGAGCCATCCAGCGCCGCCTGCTGACTCGATTTAAAGACAAAACCCCGGCACCACTGCAGAACCTGGACACACTGCTAGACGCCACTTACAGCCAGGTGATGGCGCTGGCGGAGGCCGCGGAGGACAACCGAGCACAGCTGGAGGAGGCATTTGTCCGCCTGCGGAGCGCCACGCAcctgctggtgctgctgctgtcgCTGTCGCAGGGCCTGACCCCCGACCAGACGGCCATCCTGGAGGCCacgctgctgccgctgctgcagGACACGCCACagctgGGCTGGGAGGAGAGCTGTGACGCCGCCGTCTCCCACCTCCTGCGGAGCTGCCTTTCGCGGAGCCCCAAGGACCAGGCCACGTCTCTAGCCCAGGCAGGAGGCCCCGTGCTGGGCCTGCCCCGCGACACCGCCCGCCTCAAGAAACACATTACCCTGATGTGCGATCGCATCAGCAAGGGAGGCCGCCTCACCCTGGCCTCTGAGGCCAACGTCCCTGTCCCTGTCCAGATCCAGAACCTGGCCGTTCCCGGAGGTGTTGAGCCCATTGCAGAGGTGGCTGGTGACGGGGAGGAGCTGGAACTTCCACCGGAAGTCACCAAGTTCGTCAAGAAGAAACATGCATCTAAGAAAGTCAAGAAAGATAAAGACAACGTGAAAGAAGAAGCGGGAGGTGCAGAGGAGCCCGTCAAGGAGGCCaaaaaggagaagaaggagTCATCCAAGGAGAAGAAGGAGTCGAAGAAGGATTCCAGCAAAGAGCCTAAGGAGGAGGCGAAGAAGGAGTCCAAGAAGGAATCGTCCTCCTCCAAGGAGAAGAAGGAGTCGTCcaaggagaagaaggagaaggacaAAGACAAGGAAGGGAAGGAGTCAGCGGACAAGAAAGTCTCCAGGAAATCATCTGTAAaagtgaaagagaagaagaaggagccAGAGGCTGGAGAGGGCTGACGAGAGCAATGCGATAAACTCGCATGATATGCATACACAcgacatacataaacacaagaTACATGTACACACGTCTAAACATcaggcacatatacacacaccaggggctcacacatataaacatacatacatggaTATACAGTGAACATGTAAACAGAAGGTCACAGAActcgacacacaaacacacgcacacattcacttATGCAGTCctaatacatgtaaatattCTCCGTCAAGCTACATATACGCCAGTAGCAAAGCAATCCTCTCAGATGCATATTTACATCGTCCAGTAATAGCTgatacacacacgcgcacacacacacacaccacacacacacacacacacacacacacacacacaca
>XM_039806473.1
TGCGCACAACAGCCCGGCTTCCTCGTTAAGCGTCAGTGCCATGACAACAGGACGATGGCTGCAAGCAAGAGGGTGAGAAATGTGATTTCTGTGTGAACCAAGAGTACCAAAACCATCGGCTTTTACGGACTGGCTCGTGTACGTGAAGAGGAAGCATGTCTCTCTTCAAGGCCCGTGATTGGTGGTCAGCAACGCTTGGCGAGGGGGAGGAGTTTGACCAGGGATGCCTCTGTGTCGGCGACGTGGACAACAGTGGCACCGAACATGACAAGGTGGTGGTGGGCAGCTACATGGGGATGCTGAGGATATTCTCCCCACATGCCAATAAGACCAGCGAGGGAGCTCTGGTCGAGGCCCTGCTTCTCGAAGTCCAGCTCCAAAATGCCATCATCCAGGTGGAAGTGGGCAAGTTTGTGTCGTGTTCAGATCTTCTTCATCTGGCTGTTCTTCACCCCAGGAAGTTGTCAGTCTTCTCTGTTTCAggCACTGCAGGGAACGTGGAGCACGGTGACCAGTACCAGCTAAAGTTGGTTTATGAACACAATCTGCAGAGAACAGCCTGCAACATGACCTACGGCACCTTCGGAGGGGTCACAGGTCACCACTCCCTGTGTATCCAGTCTATGGACGGGATGCTGATGTTCTTTGAGCAGGACAGCTACACTTTTGGCAGGTTCCTGCCTGGTTTCCTGCTTCCCGGCCCATTGGTCTACAACTCCAGAACAGACAGCTTCCTCACCGTTTCCTCGGCACGCCAGCTGGAGAGCTACAAGTATGAGACTCTGGCAGTGGCTACAGAGGCAGAGAGTCGACAGGATCCTGATCTGCCCCTCAAGACTGGAGGCAAAAGGCTGACGCCTGACTGGACGTTTGTCCTGGGAGAACAGGCCCTGGACCTCTGTGTGCCCTCCCTCTCCCACTACTCCTCCTTCATCTTCATTCTGGGTGAGAGGAACCTCTACTGTCTCCGGGACAGCGGCCAGATCCGCTTCATGAAGAAGCTGGAGTTCAACCCCAGCTCCTTTCTGCCCTACGCCTCAGTGACAGATGGCACGACCAAcctgttgctaggtaaccataccaACATGCTGCTGGTTTACCAGGATGTGACTCTAAAGTGGGCGGCGCAGCTTCCCTTTGTGCCCGTGGCCATTCGCGTCGCCAACTTCCCGGAGATGAAAGGAGTCGTGATCAGCCTGAGCTCTGATGGCCACCTCCTGTGCTCCTACATGGGTACGGACCCCTCCTTCTTCTCCACGCCCAAGGTGGACGCCAGGGAGGCCGACTACGAGCAGGTGGATGCTGAGATGAAGACGCTGCAGAAGTTCATCAGAGAGGCCACCAGGACTCAGGACATCCTGGCTAAAACCGACGCTGAGGAGGACCTCATTGTTACAGTTGCTGTGTCCTCCAGCATGGACAGCCCACCGCAAGCTCTGATCCAAGATATCGACGGTCTGACCGTCCCTTCAGTAACAGTCCAGTTAAAGGTGAAGGCCCGTTGTGTTGTACAGTCCTCTAAGATGACCGTCGGCGTTCAGCCTCCTCTGGCCGTCACTCAggaaaaatttgttttggaacCCATGGgtgCTGGTTCCTCAACAGTTGTGGCATTTTCAGCTTTCCTCAACGGCCGCTACCCCACTGCTGACCTGACTGGAGACATCACTGTGTCCTTCAGCTTACCGACAGgaGTTCCCAGGGTTCTCCAGTCCAAGTTCAGTCTTCCTTTGGCATTGGTGTGCGTTCCTACCTCTCCAGCCAAAACCACCAAGTTTAAGATTACTGTGGACACCAACCAGCCACCAGTCAACCTCAACTCCATTTTCCCAGAGTTTTCAGCTAAATCAGAAGATAAGGATGGGAATAGTTTGGCTTTCCAGTTCCTGTCAGGAGCCAAGGTTACCGTGGTGGCCTCCAAGACCTCCCAGCGTTACCGTATTCAGAGCGACTGTTTTGAGGACATGTGGttggtggtgaaggagttggtcCAGAGATTCGACAAGCATTTCTCCAAACTGGGAGTCAAAGACTTCAAGAAAAGCTTCAGTGGGCCGCTCCCTATGCAGGAGTACTTCCTGTCTGTAGACCACCACTTCCAGctgcGTGTCAGTGCTCAGCAGTACCAGGATCTGCTGTCCGAGCGGGCTGTCCAATTCAGAGCCATCCAGCGCCGCCTGCTGACTCGATTTAAAGACAAAACCCCGGCACCACTGCAGAACCTGGACACACTGCTAGACGCCACTTACAGCCAGGTGATGGCGCTGGCGGAGGCCGCGGAGGACAACCGAGCACAGCTGGAGGAGGCATTTGTCCGCCTGCGGAGCGCCACGCAcctgctggtgctgctgctgtcgCTGTCGCAGGGCCTGACCCCCGACCAGACGGCCATCCTGGAGGCCacgctgctgccgctgctgcagGACACGCCACagctgGGCTGGGAGGAGAGCTGTGACGCCGCCGTCTCCCACCTCCTGCGGAGCTGCCTTTCGCGGAGCCCCAAGGACCAGGCCACGTCTCTAGCCCAGGCAGGAGGCCCCGTGCTGGGCCTGCCCCGCGACACCGCCCGCCTCAAGAAACACATTACCCTGATGTGCGATCGCATCAGCAAGGGAGGCCGCCTCACCCTGGCCTCTGAGGCCAACGTCCCTGTCCCTGTCCAGATCCAGAACCTGGCCGTTCCCGGAGGTGTTGAGCCCATTGCAGAGGTGGCTGGTGACGGGGAGGAGCTGGAACTTCCACCGGAAGTCACCAAGTTCGTCAAGAAGAAACATGCATCTAAGAAAGTCAAGAAAGATAAAGACAACGTGAAAGAAGAAGCGGGAGGTGCAGAGGAGCCCGTCAAGGAGGCCaaaaaggagaagaaggagTCATCCAAGGAGAAGAAGGAGTCGAAGAAGGATTCCAGCAAAGAGCCTAAGGAGGAGGCGAAGAAGGAGTCCAAGAAGGAATCGTCCTCCTCCAAGGAGAAGAAGGAGTCGTCcaaggagaagaaggagaaggacaAAGACAAGGAAGGGAAGGAGTCAGCGGACAAGAAAGTCTCCAGGAAATCATCTGTAAaagtgaaagagaagaagaaggagccAGAGGCTGGAGAGGGCTGACGAGAGCAATGCGATAAACTCGCATGATATGCATACACAcgacatacataaacacaagaTACATGTACACACGTCTAAACATcaggcacatatacacacaccaggggctcacacatataaacatacatacatggaTATACAGTGAACATGTAAACAGAAGGTCACAGAActcgacacacaaacacacgcacacattcacttATGCAGTCctaatacatgtaaatattCTCCGTCAAGCTACATATACGCCAGTAGCAAAGCAATCCTCTCAGATGCATATTTACATCGTCCAGTAATAGCTgatacacacacgcgcacacacacacacaccacacacacacacacacacacacacacacacacaca

Function

symbol description
bbs9 Acts upstream of or within several processes, including embryonic morphogenesis; renal filtration; and retina layer formation. Predicted to be part of BBSome. Predicted to be active in membrane. Is expressed in brain; eye; and somite. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome; Bardet-Biedl syndrome 9; craniosynostosis; and primary ovarian insufficiency. Orthologous to human BBS9 (Bardet-Biedl syndrome 9).

NR:

description
protein PTHB1

GO:

id name namespace
GO:0001843 neural tube closure biological_process
GO:0010842 retina layer formation biological_process
GO:0034464 BBSome cellular_component

KEGG:

id description
K19398 BBS9; Bardet-Biedl syndrome 9 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806472.1 True 3491 mRNA 0.54 23 33632641 33822829
XM_039806473.1 False 3476 mRNA 0.55 22 33632641 33822829

Neighbor

gene id symbol gene type direction distance location
trnap-agg_5 NA coding upstream 928 33631642 ~ 33631713 (+)
trnap-agg_4 NA coding upstream 1531 33631039 ~ 33631110 (+)
nt5c3a nt5c3a coding upstream 3696 33605846 ~ 33628945 (+)
trnap-agg_3 NA coding upstream 6639 33625931 ~ 33626002 (+)
dctn3 dctn3,LOC102785116 coding upstream 66364 33557251 ~ 33566277 (+)
mettl6 mettl6 coding downstream 83561 33906390 ~ 33911214 (+)
LOC120562644 NA coding downstream 94170 33916999 ~ 33919175 (+)
LOC120562646 NA coding downstream 99749 33922578 ~ 33935943 (+)
LOC120562692 NA coding downstream 261266 34084095 ~ 34088746 (+)
LOC120561733 NA coding downstream 597078 34419907 ~ 34441093 (+)
G78000 NA non-coding upstream 44385 33564020 ~ 33588256 (+)
LOC120561935 NA non-coding upstream 44549 33583805 ~ 33588092 (+)
G78002 NA non-coding upstream 114126 33515709 ~ 33518515 (+)
G78001 NA non-coding upstream 138981 33493424 ~ 33493660 (+)
G77993 NA non-coding upstream 172406 33460022 ~ 33460235 (+)
G78052 NA non-coding downstream 100164 33922993 ~ 33923230 (+)
G78054 NA non-coding downstream 115430 33938259 ~ 33938468 (+)
G78055 NA non-coding downstream 127944 33950773 ~ 33951005 (+)
G78117 NA non-coding downstream 139965 33962794 ~ 33963092 (+)
LOC120561795 NA non-coding downstream 162020 33984849 ~ 33987987 (+)
G77888 NA other upstream 531107 33100413 ~ 33101534 (+)
LOC120561717 NA other upstream 1211169 32405133 ~ 32421472 (+)
G77682 tbx20 other upstream 1652732 31976318 ~ 31979909 (+)
G77447 NA other upstream 2496495 31134829 ~ 31136146 (+)
rab5ab rab5a,LOC104947906,LOC103388351,LOC105936747,LOC100704868,LOC101078239,LOC104931780 other upstream 2901032 30687338 ~ 30731609 (+)
bmper bmper other downstream 3258 33826087 ~ 33879132 (+)
LOC120562157 NA other downstream 71531 33894360 ~ 33904285 (+)
sh3bp5b sh3bp5,LOC102783023 other downstream 167713 33990542 ~ 34042648 (+)
G78200 NA other downstream 706526 34529355 ~ 34544379 (+)
LOC120562567 NA other downstream 1016328 34839157 ~ 34856532 (+)

Expression


Co-expression Network