hacl1 (hacl1)


Basic Information

Item Value
gene id hacl1
gene name hacl1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 19694915 ~ 19700987 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806492.1
ATGGACGAAGTGACAGGAGCTCAGCTGATTGCTGAGTCTCTAAAGGCCCAGAAAGTGGAGTACATGTTTGGGATAGTCGGTGTTCCTGTCATAGAAGTGGCTATGGCTGCTCAGGCTGCGGGGATAAAATATGTGGGAATGCGCAATGAACAAGCGGCGTGCTATGCAGCATCTGCCATTGGATATCTCACTGGGAGACCAGGTGCCTGCCTGGTGGTGTCTGGACCTGGACTCATCCATGCTCTGGGTGGAATGGCTAACGCTAACATGAACTGCTGGCCGGTGGTTGTTATTGGAGGTTCTGCAGATCGAAACCAGGAAACAGCAGGAGCCTTTCAGGAGTTTCCTCAGGTGGAAACATGTCGCCTTTATAGCAAGTTCTCTGCCAGACCCAGCAGTCTGGAAGCCATCCCGTCAGTGATAGAGAAGGCAGTTCGCACCAGCATGTACGGGCGTCCAGGTGCTTGTTATGTGGATATTGCAGGGGACATGGTCAATGCTAAAGTGGACAGGAGCGATGTCAGAGTTGTGTCCTGCTGCCCATCTCCACCGGTGAGTTTGGCTCACCATGGTGCAATCATTGAAGCCATATCTGTCTTGAAAGCAGCTAAAAGACCCTTAGTCATCATTGGCAAAGGGGCAGCCTATGGCCGAGCTGAAACTGCTCTGAGGGAGTTTGTGGAAAAGAGCGGTCTGCCATTTCTGCCCACCCCAATGGGGAAAGGGGTCCTACCTGATGATCACCCCAACTGTGTGGCTGCTGCCCGCTCAAGAGCTCTTCTCCAGGCTGACGTTGTGCTTCTGCTTGGAGCCAGGCTGAATTGGATCTTGCATTTTGGTCTGCCACCTAGATTTGACCCTGATGTCAAGATCATCCAGGTTGACCTTTGTGCTGAGGAGATAGGAAACAATGTGAAGCCTGCTGTTGCTCTCCTGGGAGACATCAACTCTATTGTCACTCAGcttCTGGGTGGCGTCCGTAATGATGGCTGGAAATATCCCTCTGATACAGAATGGTGGAGCACACTGAAGGACAAAATTGCTGCTAATGCAAAAATATCGAAGGCGCTCGCTCTTCAGTCAACAATGCCCATGAACTACTACACAGTGTTTCATCACGTTTCCCAGCTGCTGCCACATGACTGTATCATTGTCAGTGAGGGTGCAAACACTATGGACATAGGACGCACTATGTTGAACAACTACCTGCCTCGACACAGGTTGGATGCTGGTACATTTGGAACAATGGGAGTAGGCCTGGGTTTCGCTatagcagcagccgctgtggaGAGGAGCGAGAATAAAAACCAAAGGATAGTCTGTGTGGAAGGAGACAGTGCCTTTGGATTTTCTGGCATGGAAGTTGAAACCATGTGCCGGTATAATCTACCTGTGGTCATCATTGTGGTCAATAATAATGGTATTTACAGCGGAGTGGATCCTGAGACGTGGAAAGAAATGGCAAAAATGGGAGATCTGACATCTATAGCCCCTCCTGTGACCCTCCTACCTGAGGCACGCTATGATGAGGTCATGACAGCGTTTGGAGGTCAAGGGTTCCTGGTGAGGACGGTGGAGGAGCTGCGCAGTGCTTTACAGCTTAGCCTGAGTGACTGGGAGAGACCAAGTCTCCTAAATGTGCTCATCGACCCTTCCTCCGACAGAAAACAGCAGGAGTTTCCTTGGCTCACACGCTCCAACCTATAGACTGAAAGAAGGATCTGCTTCCTCTTCCATCCAGAACATTATTAGAACAGCAGTAACTGTTTTCCCCGGGAAATACAACCTGGGAAAAATATaaagctgcttttgttttttttgtgattgttttcaTGAAATAACTGAATTTATTGTATCAGTTCTTACTACACAGTAGTATTAAAATTAACAAAAGAattaatacaacaataaaacattttcacacatgca

Function

symbol description
hacl1 Predicted to enable thiamine pyrophosphate binding activity. Predicted to be involved in fatty acid alpha-oxidation. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be active in peroxisome. Orthologous to human HACL1 (2-hydroxyacyl-CoA lyase 1).

NR:

description
PREDICTED: 2-hydroxyacyl-CoA lyase 1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0030976 thiamine pyrophosphate binding molecular_function
GO:0003824 catalytic activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K12261 HACL1; 2-hydroxyacyl-CoA lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806492.1 True 1929 mRNA 0.49 17 19694915 19700987

Neighbor

gene id symbol gene type direction distance location
ankrd28b ankrd28 coding upstream 1117 19675143 ~ 19693798 (+)
twist1b twist1,LOC100712142,LOC103366955 coding upstream 81763 19611746 ~ 19613152 (+)
macc1 macc1 coding upstream 99560 19590103 ~ 19595355 (+)
sp8b sp8,LOC101158882,LOC104926695,LOC101468530,LOC107378685 coding upstream 112161 19577552 ~ 19582754 (+)
LOC120562733 LOC100705529,LOC103366949,LOC102296000 coding upstream 217599 19459555 ~ 19477316 (+)
colq colq,LOC103374283 coding downstream 93 19701080 ~ 19710338 (+)
fkbp14 fkbp14,LOC102795884 coding downstream 22421 19723408 ~ 19725265 (+)
cpvl cpvl,LOC102795305 coding downstream 52713 19753700 ~ 19760022 (+)
jazf1b jazf1,LOC104949891 coding downstream 105791 19806778 ~ 19819020 (+)
hibadhb hibadh,LOC104927761,LOC100691671,LOC101485952,LOC102793794,LOC102194756,LOC105926386,LOC103478572 coding downstream 137562 19838549 ~ 19847402 (+)
G73776 hdac9 non-coding upstream 55456 19634873 ~ 19639459 (+)
LOC120562701 NA non-coding upstream 69304 19614503 ~ 19625611 (+)
LOC120562732 NA non-coding upstream 238299 19453769 ~ 19456616 (+)
G73606 NA non-coding upstream 374867 19319438 ~ 19320048 (+)
G73586 csnk2b,LOC102207154,LOC106573472,LOC101175345,LOC104925497,LOC102778826 non-coding upstream 418399 19272727 ~ 19276516 (+)
G73836 NA non-coding downstream 119248 19820235 ~ 19820591 (+)
G73871 NA non-coding downstream 318122 20019109 ~ 20052006 (+)
G73881 NA non-coding downstream 339884 20040871 ~ 20046380 (+)
G74067 NA non-coding downstream 613497 20314484 ~ 20318117 (+)
G74081 NA non-coding downstream 639354 20340341 ~ 20340927 (+)
G73779 hdac9 other upstream 45404 19646975 ~ 19649511 (+)
si:ch211-254p10.2 LOC102209663,LOC101158134,LOC102295699,LOC101064473 other upstream 241632 19447167 ~ 19453283 (+)
hcst LOC104925504,LOC104961397 other upstream 502813 19190020 ~ 19192102 (+)
G73570 LOC103371659 other upstream 535920 19148613 ~ 19158995 (+)
kmt2bb kmt2b other upstream 832957 18833245 ~ 18861958 (+)
LOC120561838 tppp other downstream 491703 20192690 ~ 20209327 (+)
si:ch211-257p13.3 kifc3,LOC102783047 other downstream 513601 20214588 ~ 20226991 (+)
gra NA other downstream 621343 20322330 ~ 20325961 (+)
glipr2l glipr2 other downstream 899336 20600323 ~ 20605165 (+)
sec61b sec61b,LOC102796100 other downstream 1307026 21008013 ~ 21011414 (+)

Expression


Co-expression Network