sbk3 (sbk2,LOC100700842,LOC101487833,LOC102212418,LOC102777020)


Basic Information

Item Value
gene id sbk3
gene name sbk2,LOC100700842,LOC101487833,LOC102212418,LOC102777020
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23420347 ~ 23426645 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039806510.1
AGAACaggagagagtcagagagagagagagagagagagagagagagagagagagagagagagagagctggcaCAAGAATAGGAAAAGGGAGGGAAAGAGTTCAATGCGTGTGTCTCCTGGGGAGAAGCACATAGTCAATAACCAGGTCTCCGGTAAACATCTATGAACCTTCTCTATAAAGCTGCTGTGCTACTGCGTGGACCCACGGATCAAAGCAGACATATCAGCTTCAATTCCAGTTTAATTATCAGTCTAGCAGAGGGGATATCATTGAGCTCCAGCACAGAACAGTAGCTAGTTGCAGTTGCAGCAGCTTGCCAGGAGTTAAGTCTTTAGATGCTGAAAAGAGCCGAGACAAAGTGAGCAGAGATCAACCAACTAAACAGAAAATGACAgcTGCAGCAGCTCAGGAACTTGACGAGCGATGTTTCCTGTCGGCGCAGTCCATGCCCAGTCTGAAGGTATCCGAACACTTCCAGGTGGTAAAGCTCCTGGGAGAGGGATCCTACGGAAAGGTCATGTTAGCTGTGCACAGAAAGAGAGGAACCCCAATGGCTCTGAAGTTCTTCCCTCGTCAGTCTACCTCGCTCACCTCTTTCCTGCGTGAATACAATCTCTCCCTTTCTTACTGCACCCATCCTTCTCTGACACGGGCAATTGGCATCTTCTTTTCCACACCGTCCTACTATGTCTTTGCCCAGCAAGCTGGTCTATATGGTGATCTCTACAATGTCATAGTGTCAGAGGTTGGGGTGGATGAAGAGTGTGTCCAGAGATTGATGTCCCAGCTGAGCGGGGCCGTTACACATCTCCACTCCCTGGGCTTTGTCCACCGCGACATCAAACCTGAGAATATCTTCCTGTGTGACAGTTCCTGTCGCTGGGTCAAACTTGGGGACTTTGGCCTTGCCCGGGCCATCGGCTCCACTGTTCGCGCTGTCTGGTACGAGTCTCCCTTCTGCACTCCTGAGGTGGAACCTGCCAAGGAGGCTCAGAAAGAGTGGGATGGGAccgaggaggagatggaggacaTTTGGATAACAGTGGAGCCCTGTATTGACAGTTGGGCCCTCGGTATACTCGTCTATTGCCTCTTGACTAGCTGCTTCCCCTGGGAGGAGAGCACCCATGATGACCGCGGCTACCGTAGATTCAAGGAGTGGTTTGATCGTGAGGCTGAAAAGGAGGAGAAGATGAGGGATGGTGAGTGGAGAGGTGAAGAGGAAATAGACAGTTACACAATCATGAAGGAGAGCCAGAGGGACAACCCTGCTCCCTCACAATTTGAGAGCCTCAGCCCTCTAGTGATGACTCTTTTTAAGGAGCTTCTCCACCCTGTGCCCAAACACAGAGGGCGCCCCGAGGAGATCCTGAGCTATCTGGGAGGGCCGTggctgacagagacagagattgaggagaagaggaaggcagaggaggcagagagggaggCCAGAAAAataagagagggaggaggtgtAGAAGAAGAGCTATTAAGGGAAGGAAGAGGGGAGAGATAAGCTTTGTCTTTATAAAATTGTTTTATGACGGGTTTTAATGAATATAATGTGTTTTGAAAACATTgtacaatgtattttttttgatGATTAGCGATTTAAACCTGGTcgcacagaattccgtgaaatgatcccGAATCGTTAACACCGCATTACGTGGcggtggcacggaatgtgtgaaaaatccgtgtggccaccacggaaaacaatgccaatgtaaagtcaatgagaagatgacgtagcattaagagcgactacgttAGCGAGTACTATGTAAGGCTGAAATTCCGCGTAAGGAGATCGGGGTTCGTGTCCCGGAGGTGAAGTTTCctaaagtcgctttcttcttttctgtcccTTTCTTCCTgcgtgtcacggaaccgtaagcccacccatgaccttttccttaacttaaggggccgggCCGTGTCGGAATTTTCtgcgatccgtgttcatttcacgaaattcttccgtgggcccatcatgGAATGTTTTACGATTCTGTGAAACTGCCGCAGATTCTGAGTTAagggggccgtgttcatttcacggaattctgtgagatcaggttgatttaaacaaatacaaatgtatGTTCTATAAGGTgctatattttcatatttttttaataaatatccTTATTAAAGTTACCACTTCAATTGTTGTATATATTCcagtgtgtttgtttatatgtgtatgtatgtgtgtcttaaTGAAATAAGTCTATAGATagtgtgatgttgatgaaactACAAGCTGCATTATAGTGCCTTTAAAAATCTGTATCGCAATTGTTGTAAAATAAACTCCTTGCATTTAAA

Function

symbol description
sbk2 Predicted to enable MAP kinase kinase activity. Predicted to be involved in MAPK cascade and protein phosphorylation.

NR:

description
PREDICTED: serine/threonine-protein kinase SBK2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039806510.1 True 2335 mRNA 0.47 4 23420347 23426645

Neighbor

gene id symbol gene type direction distance location
foxj2 NA coding upstream 18637 23395934 ~ 23401710 (+)
isoc2 isoc2 coding upstream 24676 23392999 ~ 23395671 (+)
rcvrn2 LOC104929791,LOC103367647,LOC104960422 coding upstream 37674 23378605 ~ 23382673 (+)
cacng8b cacng8,LOC104960431,LOC105934996,LOC106536814 coding upstream 97586 23304312 ~ 23322761 (+)
cacng7b LOC103478058,LOC106931042,LOC107100306,LOC102228764,LOC105934928,LOC102193840 coding upstream 118322 23289137 ~ 23302025 (+)
mfap5 mfap5,LOC104934636,LOC104960418,LOC107082259,LOC105934952 coding downstream 7004 23433649 ~ 23437044 (+)
slc2a3b LOC104960409,LOC101465952,LOC102775578,LOC101063282 coding downstream 72144 23498789 ~ 23508665 (+)
ephb6 ephb6,LOC102800023,LOC104960407 coding downstream 85910 23512555 ~ 23556483 (+)
m6pr NA coding downstream 167216 23593861 ~ 23600002 (+)
phc1 phc1 coding downstream 174457 23601102 ~ 23608496 (+)
G75199 LOC103372680 non-coding upstream 66172 23351145 ~ 23354175 (+)
G75197 NA non-coding upstream 69580 23346840 ~ 23350767 (+)
G75196 u2af2 non-coding upstream 77670 23339846 ~ 23342677 (+)
LOC120561704 NA non-coding upstream 87591 23331840 ~ 23332756 (+)
G75192 NA non-coding upstream 91718 23328242 ~ 23328629 (+)
G75227 NA non-coding downstream 10451 23437096 ~ 23441226 (+)
G75301 NA non-coding downstream 67568 23494213 ~ 23494477 (+)
LOC120561968 NA non-coding downstream 204771 23631416 ~ 23633834 (+)
G75427 NA non-coding downstream 456532 23883177 ~ 23884631 (+)
G75483 ptpn6 non-coding downstream 516848 23943493 ~ 23948403 (+)
LOC120562293 LOC103360151,LOC102310947,LOC102785150 other upstream 337200 23070587 ~ 23083147 (+)
cnot3a cnot3 other upstream 508827 22900089 ~ 22911520 (+)
myh14 NA other upstream 600294 22785578 ~ 22820053 (+)
LOC120562539 LOC102295960,LOC100711672,LOC102209551,LOC101487210,LOC102786116 other upstream 714931 22689070 ~ 22705416 (+)
LOC120562537 NA other upstream 752462 22660479 ~ 22667885 (+)
LOC120562612 LOC103367657,LOC105025867,LOC103136704 other downstream 64480 23491125 ~ 23494034 (+)
trpv6 LOC104929027,LOC104960406,LOC103388006,LOC107082237 other downstream 134203 23560848 ~ 23571243 (+)
casp2 casp2,LOC102795506,LOC103369458 other downstream 214910 23641555 ~ 23651496 (+)
LOC120563204 NA other downstream 341588 23768233 ~ 23813408 (+)
LOC120563047 vamp1,LOC104928996 other downstream 447264 23873909 ~ 23879415 (+)

Expression


Co-expression Network